mRNA_H-paniculata_contig30682.8309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30682.8309.1
Unique NamemRNA_H-paniculata_contig30682.8309.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 71.6 bits (174), Expect = 2.510e-13
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            HW+ A + E + L + G W  V  P+N  V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ Y    SP     + +++LS AA+  W+L
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDL 157          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 74.3 bits (181), Expect = 3.130e-13
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            EP+++ E  AS E E W+RA E E   LI+N  WT+   P     ++  +I+K+K   DGKV +YK RLV  G  Q  GI Y    +P     S + + S AA +D+E+
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEI 672          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 72.0 bits (175), Expect = 2.020e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            HW+ A + E + L + G W  V  P+N  V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ Y+   SP     + +++LS AA+  W+L
Sbjct:  627 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 720          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 72.0 bits (175), Expect = 2.020e-12
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   43 EHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            E W+ A ++E++ + +NG W  + RPK   VV    +YK K+ E GKV+K+K RLV  G  Q  GI Y    +P   + + ++++++AA + W +
Sbjct:  799 EKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVIAYAAQKGWAI 893          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151R0M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0M8_CAJCA)

HSP 1 Score: 71.6 bits (174), Expect = 2.590e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            EPKS+ E    LEW    +A   E+Q L  N  W  +  P N+  +    +YK K   DG +E+YK RLVA G  QI+G  Y    SP   + + +++L+FAA Q W L
Sbjct:  335 EPKSYHEASKHLEWI---QAMNAEIQALESNHTWVLIELPPNKNAIGCRWVYKIKHRADGSIERYKARLVAKGYTQIEGQDYLDTFSPVAKLTTIRLLLAFAATQQWNL 440          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A328E399_9ASTE (Integrase catalytic domain-containing protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328E399_9ASTE)

HSP 1 Score: 71.6 bits (174), Expect = 2.630e-12
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   31 SLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            ++ + HW++A   E+  L +N  WT V  P+++ V+    +Y+ K   DG +E+YK RLV  GN Q++GI Y    +P   + + +++L+ AAI++WEL
Sbjct:  449 AVRFPHWRQAMSDELSALEKNDTWTLVPLPRHKKVLGCKWVYRIKRKCDGTIERYKARLVILGNHQVEGIDYHETFAPMVKLTTVRVLLTVAAIRNWEL 547          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 71.2 bits (173), Expect = 3.830e-12
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   31 SLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            +L+ E W+ A   EM  L EN  W  V  PK + VV    I+  K+G DGK+++YK RLVA G  Q  GI Y+   +P   + S ++++S AA  DW+L
Sbjct:  858 ALKDEKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKL 956          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A5N5FXC4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FXC4_9ROSA)

HSP 1 Score: 69.3 bits (168), Expect = 1.780e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   43 EHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            E+W+ A + E + L + G W  V  P N  V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ Y+   SP     + +++LS AA+  W+L
Sbjct:  590 ENWRNAMKEEFEALQKQGTWELVPVPPNRNVIGSKWVYKIKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 684          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.520e-11
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMIL 297
            EP++++E   S + E W  A   EM  + EN VWT V  P+    +    ++K+K   DG V+ YK RLVA G RQI G+ Y  A SPA    S +++L
Sbjct:  546 EPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILL 644          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 67.8 bits (164), Expect = 5.890e-11
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
            +W  A   E   LI+ G W  V RPKN  ++ +M +YK K   +G++ +YK RLVA+GN Q+ G+      SP    A+ + +L  A   DW L
Sbjct:  419 NWNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYDWPL 512          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A540NMU0_MALBA2.510e-1338.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K690_LASNI3.130e-1338.53Retrovirus-related pol polyprotein from transposon... [more]
A0A5N5FUF0_9ROSA2.020e-1238.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T9B6_CAJCA2.020e-1234.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A151R0M8_CAJCA2.590e-1238.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A328E399_9ASTE2.630e-1235.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T5R4_CAJCA3.830e-1240.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5FXC4_9ROSA1.780e-1137.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5YQU7_9ROSI4.520e-1139.39Integrase catalytic domain-containing protein n=1 ... [more]
UPI00090104FD5.890e-1137.23uncharacterized protein LOC104779870 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30682contigH-paniculata_contig30682:472..798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.123744-CDS-H-paniculata_contig30682:471..6541622929943.123744-CDS-H-paniculata_contig30682:471..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30682 472..654 -
1691481079.9506946-CDS-H-paniculata_contig30682:471..6541691481079.9506946-CDS-H-paniculata_contig30682:471..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30682 472..654 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.1356044-UTR-H-paniculata_contig30682:654..7981622929943.1356044-UTR-H-paniculata_contig30682:654..798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30682 655..798 -
1691481079.9588614-UTR-H-paniculata_contig30682:654..7981691481079.9588614-UTR-H-paniculata_contig30682:654..798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30682 655..798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30682.8309.1prot_H-paniculata_contig30682.8309.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30682 472..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30682.8309.1

>prot_H-paniculata_contig30682.8309.1 ID=prot_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMI
LSFAAIQDWEL
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mRNA from alignment at H-paniculata_contig30682:472..798-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30682.8309.1 ID=mRNA_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig30682:472..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCCAAGAGTCACCGGGAGACGCAGGCGTCGCTGGAGTGGGAACATTG GCAAAGAGCGGAGGAAGTCGAGATGCAAGGCCTCATCGAAAACGGGGTTT GGACGCAAGTGTAGCGCCCGAAGAACGAGGTTGTCGTGAGCACGATGATG ATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATACAAGCG CCGCCTGGTCGCCCACGGAAACCGTCAGATCAAGGGCATCCACTACCAGG TAGCTTCGTCCCCTGCACCCGCAGTGGCCAGCACAAAAATGATATTGTCA TTTGCGGCAATCCAGGACTGGGAGCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig30682:472..798-

>mRNA_H-paniculata_contig30682.8309.1 ID=mRNA_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig30682:472..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATA
CAAGCGCCGCCTGGTCGCCCACGGAAACCGTCAGATCAAGGGCATCCACT
ACCAGGTAGCTTCGTCCCCTGCACCCGCAGTGGCCAGCACAAAAATGATA
TTGTCATTTGCGGCAATCCAGGACTGGGAGCTAATGATGATCTACAAAAG
AAAAATCGGCGAGGACGGAAAAGTGGAGAAATACAAGCGCCGCCTGGTCG
CCCACGGAAACCGTCAGATCAAGGGCATCCACTACCAGGTAGCTTCGTCC
CCTGCACCCGCAGTGGCCAGCACAAAAATGATATTGTCATTTGCGGCAAT
CCAGGACTGGGAGCTA
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