mRNA_H-paniculata_contig30682.8309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 71.6 bits (174), Expect = 2.510e-13 Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
HW+ A + E + L + G W V P+N V+ + +YK K +DGKV +YK RLVA G Q G+ Y SP + +++LS AA+ W+L
Sbjct: 64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDL 157
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 74.3 bits (181), Expect = 3.130e-13 Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
EP+++ E AS E E W+RA E E LI+N WT+ P ++ +I+K+K DGKV +YK RLV G Q GI Y +P S + + S AA +D+E+
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEI 672
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA) HSP 1 Score: 72.0 bits (175), Expect = 2.020e-12 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
HW+ A + E + L + G W V P+N V+ + +YK K +DGKV +YK RLVA G Q G+ Y+ SP + +++LS AA+ W+L
Sbjct: 627 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 720
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 72.0 bits (175), Expect = 2.020e-12 Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 43 EHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
E W+ A ++E++ + +NG W + RPK VV +YK K+ E GKV+K+K RLV G Q GI Y +P + + ++++++AA + W +
Sbjct: 799 EKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVIAYAAQKGWAI 893
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151R0M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0M8_CAJCA) HSP 1 Score: 71.6 bits (174), Expect = 2.590e-12 Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
EPKS+ E LEW +A E+Q L N W + P N+ + +YK K DG +E+YK RLVA G QI+G Y SP + + +++L+FAA Q W L
Sbjct: 335 EPKSYHEASKHLEWI---QAMNAEIQALESNHTWVLIELPPNKNAIGCRWVYKIKHRADGSIERYKARLVAKGYTQIEGQDYLDTFSPVAKLTTIRLLLAFAATQQWNL 440
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A328E399_9ASTE (Integrase catalytic domain-containing protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328E399_9ASTE) HSP 1 Score: 71.6 bits (174), Expect = 2.630e-12 Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 31 SLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
++ + HW++A E+ L +N WT V P+++ V+ +Y+ K DG +E+YK RLV GN Q++GI Y +P + + +++L+ AAI++WEL
Sbjct: 449 AVRFPHWRQAMSDELSALEKNDTWTLVPLPRHKKVLGCKWVYRIKRKCDGTIERYKARLVILGNHQVEGIDYHETFAPMVKLTTVRVLLTVAAIRNWEL 547
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 71.2 bits (173), Expect = 3.830e-12 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 31 SLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
+L+ E W+ A EM L EN W V PK + VV I+ K+G DGK+++YK RLVA G Q GI Y+ +P + S ++++S AA DW+L
Sbjct: 858 ALKDEKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKL 956
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A5N5FXC4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FXC4_9ROSA) HSP 1 Score: 69.3 bits (168), Expect = 1.780e-11 Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 43 EHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
E+W+ A + E + L + G W V P N V+ + +YK K +DGKV +YK RLVA G Q G+ Y+ SP + +++LS AA+ W+L
Sbjct: 590 ENWRNAMKEEFEALQKQGTWELVPVPPNRNVIGSKWVYKIKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDL 684
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI) HSP 1 Score: 68.2 bits (165), Expect = 4.520e-11 Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 1 EPKSHRETQASLEWEHWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMIL 297
EP++++E S + E W A EM + EN VWT V P+ + ++K+K DG V+ YK RLVA G RQI G+ Y A SPA S +++L
Sbjct: 546 EPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILL 644
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 67.8 bits (164), Expect = 5.890e-11 Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 46 HWQRAEEVEMQGLIENGVWTQV*RPKNEVVVSTMMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 327
+W A E LI+ G W V RPKN ++ +M +YK K +G++ +YK RLVA+GN Q+ G+ SP A+ + +L A DW L
Sbjct: 419 NWNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYDWPL 512 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30682.8309.1 >prot_H-paniculata_contig30682.8309.1 ID=prot_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMIback to top mRNA from alignment at H-paniculata_contig30682:472..798- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30682.8309.1 ID=mRNA_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig30682:472..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30682:472..798- >mRNA_H-paniculata_contig30682.8309.1 ID=mRNA_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig30682:472..798- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |