mRNA_H-paniculata_contig30653.8304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30653.8304.1
Unique NamemRNA_H-paniculata_contig30653.8304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A6H5JZ96_9PHAE (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ96_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.440e-27
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LPLWT  S+ +GD IVR+F+ KNFV AMAFLN+VA VAEEQGHHPDLHLT YRNVEI+LQT SMGG
Sbjct:   38 LPLWT--STPNGDFIVRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGG 101          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: D7G856_ECTSI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G856_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.810e-25
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LPLWT  S+ +GD I+R+F+ KNFV AMAFLN+VA VAEEQGHHPDLHLT YRNVEI+LQT SMGG
Sbjct:  186 LPLWT--STPNGDFIIRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGG 249          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A836CCJ6_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.110e-20
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 LPLWTRLSSESGDR--IVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LP WT L S +GDR  IVR F  KNFV AMAFLN+VA+VAE +GHHPD+HLT+YR V+I+L T S+GG
Sbjct:   76 LPWWT-LESGAGDRLSIVRAFQAKNFVEAMAFLNRVAQVAEAEGHHPDIHLTSYREVKIELYTHSVGG 142          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A835WQC9_9CHLO (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WQC9_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-17
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LP W RL+++ G  I R F+ KNF+ A+AF NKVAEVAE QGHHPDLHL N+R VE+ + T ++GG
Sbjct:   46 LPAW-RLTAD-GTAIRRTFVAKNFMAAIAFFNKVAEVAEAQGHHPDLHLRNFREVEVVVSTHAVGG 109          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A8IT23_CHLRE (4a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IT23_CHLRE)

HSP 1 Score: 80.5 bits (197), Expect = 2.660e-17
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LP W RL+++S   I R+F+ KNF+ A+AF NKVAEVAE QGHHPDLHL N+R VE+ + T ++GG
Sbjct:   87 LPAW-RLNADS-TAISRSFVAKNFMAAIAFFNKVAEVAEAQGHHPDLHLRNFREVEVVVSTHAVGG 150          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A061QX24_9CHLO (4a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QX24_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 9.290e-17
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LPLW RLS E G  I R F+ +NF  A+ F N V E+AE +GHHPDLHLTNYR V + L T S+ G
Sbjct:   90 LPLW-RLS-EDGKMISRKFVARNFTAALKFFNDVGEIAEREGHHPDLHLTNYREVRVDLSTHSIDG 153          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A7S0IZA2_9EUKA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IZA2_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 9.490e-17
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            LP WT   S +G  I R+F+ +N+  AMAF N V+E+AEE+GHHPDLHLT +RNV ++L T ++GG
Sbjct:   91 LPAWTL--SPNGTAIRRDFVARNWGAAMAFFNAVSEIAEEEGHHPDLHLTGWRNVGVELSTHAIGG 154          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A7D8YWF2_9PLAN (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8YWF2_9PLAN)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-16
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            +PLW     E GD I R F  ++FV AMAFL +VA++AEE+ HHPDLHLT YR+V I+L T ++GG
Sbjct:   36 VPLWQ--IDEPGDSISRKFKFRDFVSAMAFLQQVADLAEEEQHHPDLHLTGYRHVRIELMTHAIGG 99          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A518H4U7_9BACT (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518H4U7_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 1.130e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   25 SESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            S  G  I R +  KNFV AMAFLN VAE+AEE+GHHPDLHL  YRN+ I+L T ++GG
Sbjct:   41 SADGKVIRREWTAKNFVAAMAFLNNVAELAEEEGHHPDLHLVGYRNLAIELTTHAIGG 98          
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Match: A0A7S1N220_9EUGL (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N220_9EUGL)

HSP 1 Score: 78.2 bits (191), Expect = 1.180e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLTNYRNVEIQLQTFSMGG 198
            +PLW    S +GDRI R+F+ KNFV AMA+L +V E+AE +GHHPDLHLT YR V I++ + S+ G
Sbjct:   57 VPLWQL--SAAGDRISRSFVAKNFVVAMAYLQQVGEIAEAEGHHPDLHLTEYRTVTIEVFSHSVKG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30653.8304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ96_9PHAE4.440e-2777.274a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
D7G856_ECTSI1.810e-2575.764a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A836CCJ6_9STRA4.110e-2066.184a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A835WQC9_9CHLO1.290e-1759.094a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A8IT23_CHLRE2.660e-1759.094a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=... [more]
A0A061QX24_9CHLO9.290e-1757.584a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=... [more]
A0A7S0IZA2_9EUKA9.490e-1754.554a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7D8YWF2_9PLAN1.080e-1656.06Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A518H4U7_9BACT1.130e-1662.07Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A7S1N220_9EUGL1.180e-1656.064a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30653contigH-paniculata_contig30653:387..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D7G856
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
Hectar predicted targeting categoryother localisation
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.5593505-CDS-H-paniculata_contig30653:386..5841622929942.5593505-CDS-H-paniculata_contig30653:386..584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30653 387..584 -
1691481079.7342067-CDS-H-paniculata_contig30653:386..5841691481079.7342067-CDS-H-paniculata_contig30653:386..584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30653 387..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30653.8304.1prot_H-paniculata_contig30653.8304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30653 387..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30653.8304.1

>prot_H-paniculata_contig30653.8304.1 ID=prot_H-paniculata_contig30653.8304.1|Name=mRNA_H-paniculata_contig30653.8304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LPLWTRLSSESGDRIVRNFITKNFVGAMAFLNKVAEVAEEQGHHPDLHLT
NYRNVEIQLQTFSMGG
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mRNA from alignment at H-paniculata_contig30653:387..584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30653.8304.1 ID=mRNA_H-paniculata_contig30653.8304.1|Name=mRNA_H-paniculata_contig30653.8304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig30653:387..584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCGCTATGGACGCGCTTGTCCTCGGAGAGCGGGGACCGCATCGTTCG AAATTTTATAACCAAGAACTTCGTCGGTGCCATGGCGTTTCTCAACAAGG TAGCTGAAGTAGCGGAAGAGCAAGGACATCACCCGGACTTGCATCTCACC AACTACAGAAACGTCGAAATCCAACTGCAAACGTTCTCCATGGGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig30653:387..584-

>mRNA_H-paniculata_contig30653.8304.1 ID=mRNA_H-paniculata_contig30653.8304.1|Name=mRNA_H-paniculata_contig30653.8304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig30653:387..584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCGCTATGGACGCGCTTGTCCTCGGAGAGCGGGGACCGCATCGTTCG
AAATTTTATAACCAAGAACTTCGTCGGTGCCATGGCGTTTCTCAACAAGG
TAGCTGAAGTAGCGGAAGAGCAAGGACATCACCCGGACTTGCATCTCACC
AACTACAGAAACGTCGAAATCCAACTGCAAACGTTCTCCATGGGAGGTCT
ACCGCTATGGACGCGCTTGTCCTCGGAGAGCGGGGACCGCATCGTTCGAA
ATTTTATAACCAAGAACTTCGTCGGTGCCATGGCGTTTCTCAACAAGGTA
GCTGAAGTAGCGGAAGAGCAAGGACATCACCCGGACTTGCATCTCACCAA
CTACAGAAACGTCGAAATCCAACTGCAAACGTTCTCCATGGGAGGT
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