mRNA_H-paniculata_contig3065.8303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3065.8303.1 vs. uniprot
Match: D7G8E4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E4_ECTSI) HSP 1 Score: 301 bits (771), Expect = 1.240e-90 Identity = 252/644 (39.13%), Postives = 329/644 (51.09%), Query Frame = 1
Query: 1 IEWVTVNQLDHALRVCSPMRRALDPQKLRHSREHDSV-APFAFVPTNAVAAARNS-----GKATSRQ-----------GHAGSA----RQRGKTA-LARKRVGKWTERDKDLAERELAMVIVEGQQKFVEGYVTQRRRYLSRRVEAQRDGHGGFYRE----GRGFAGAVGAALDNLAAKAVEARLAEFREAVKRTKITLKLLEAKKAAADATT-------VATATAGTMETGPLVNVLAAPAVTAATLKKTRTPGKSKRKASNESK-------RDGKPTT-----ILQRLSEEYSDRVGERGGGLPSCSSRNLPTKTNSAGVGXXXXXXPTAERKRAHAAALTVQHAFRVRMFHRFVWAQAYLRRPYHAFQLFARVSRPLLGTHSHTRIAVGTGTARNSDRAISRADSESTTSG--GSWLESPGFCVSDPRHVHSMDDAFWAY--SKWHRSLISSVASSTLLLAADRAETATTTPPAPGKAVAIEALPLPP-----------EGAHLFERKYILHKEAMRVLLLDLRLPLSPGTLDLAMEDLGVVIAKETSSLLE------REQ------GVNLGGTSXXXXXXXXXXXXXIGQKKMGAFGQSREISFVSFYGWWVRHLPYDPASASCIMKIVRCAKRLHSAEV 1716
+EW+TV+QLDH+LR C RRALDPQ + S E + + A A V +A + N+ GK +S + G +G+A R RG+ A +ARKRVGKW + D+DLAE E+A +I++ QQ+FVEGYV +RRRYLSRRV AQRDGHGGF RE G G + KA+EA+ AEF EAV RTK+ LKLLEAK AA+ A TAG + P + +P V + R P S KA+N+ + D K T +L+ +E YSDRVG++GGG ++R + + AG G ER R AAA TVQ AFR RMFHRFVWAQAYLR P HA+++F R G R + AD S +W E PGFC S P HVH+ D F Y S +S S +S+T + ET T P A A + P P E A FERKY + A+R + +DLR+P PG LD A+EDL IA++++ +E R Q GV L +GQ G +SF +Y WW+RHLP+DPAS C++K VRCAK LH++E+
Sbjct: 1 MEWITVDQLDHSLRTCHLTRRALDPQGMERSSEREPLPASAALVAPSAAGTSSNAVNMLLGKRSSNRQAIGVPRRSNRGRSGAASVRSRGRGRRAKMARKRVGKWNDEDRDLAELEMAGLIIQEQQEFVEGYVQERRRYLSRRVSAQRDGHGGFQREEVPTGPG---------GRWSKKAMEAKKAEFSEAVNRTKVVLKLLEAKTAASSLPQPSGGDGDAAGGTAGAVGRNPSGD---SPGVRGDGSHRRRDPQHSPPKANNDRRIKSKACVSDDKRETWDMKKVLRTATEAYSDRVGKQGGG----ATRINANRQSGAGCGATAVGRG-GERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCLPMPRGGXXXXXXXXXXXXXXXXLRPAALADVASAAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRSCTPKSYDISFSSATTTTQEEGTETGKTPPTASASTGAGVSSPGRPXXXXXXXXXNQEFAEAFERKYHIRTAAVRGMYVDLRVPFLPGALDAALEDLEQTIARDSAPPVEGGAKNRRRQVDTVSSGVRLASPLRGSGGGTAGGKGRVGQNPHGG-----RLSFAKWYPWWIRHLPFDPASTGCLLKTVRCAKALHASEI 622
BLAST of mRNA_H-paniculata_contig3065.8303.1 vs. uniprot
Match: A0A6H5L1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z0_9PHAE) HSP 1 Score: 173 bits (438), Expect = 4.580e-44 Identity = 149/462 (32.25%), Postives = 208/462 (45.02%), Query Frame = 1
Query: 490 EAVKRTKITLKLLEAKKAAADATT-------VATATAGTMETGPLVNVLAAPAVTAATLKKTRTPGKSKRKASNESKRDGKPTT------------ILQRLSEEYSDRVGERGGGLPSCSSRNLPTKTNSAGVGXXXXXXPTA-ERKRAHAAALTVQHAFRVRMFHRFVWAQAYLRRPYHAFQLFARVSRPLLGTHSHTRIAVGTGTARN--------------SDRAISRADSESTTSGGSWLESPGFCVSDPRHVHSMDDAFWAYSKWHRSLISSVASSTLLLAADRAETATTTPP----APGKAVAIEALPLP--------PEGAHLFERKYILHKEAMRVLLLDLRLPLSPGTLDLAMEDLGVVIAKETSSLLE---REQGVNL----GGTSXXXXXXXXXXXXXIGQKKMGAFGQSREISFVSFYGWWVRHLPYDPASASCIMKIVRCAKRLHSAEV 1716
EAV RTK+ LKLLEAK A+++ A TAG + P N +P ++ R P S +A N+ + K + +L+ +E YSDRVG++GGG ++ P G G T ER R AAA TVQ AFR RMFHRFVWAQAYLR P HA+++F R G A++ S + +W E PGFC S P HVHS D F Y + S ++ S+ A+ PP + G V+ P PE FERKY + A+ + +DLR+P PG LD A+EDL +IA++ + LE + + N+ G +G+ ++ +SF +Y WW+RHLP+DPAS C++K VRCAK LH++E+
Sbjct: 11 EAVNRTKVVLKLLEAKAASSNLPLPSGGNGDAAGGTAGAVGRNPSGN---SPGARGHRSRRRRDPHHSPPEAINDRRTKNKASVSDDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKP------GAGCGATAVGTGGERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCLPMPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSTALADVASAAVNLVDAWPELPGFCPSFPHHVHSADPIFLRYLRSCTRESSGISFSSATTTAEEGAATGRAPPTASASTGAGVSSPGRPPQQTQQQQHNPEFGEAFERKYNIRTAAVHGMYVDLRVPFLPGALDAALEDLEQIIARDGAPPLEGGGKNRRCNVDTVSNGVRLASPLGGSGGGIAVGKGRVTQNPHGGRLSFAKWYPWWIRHLPFDPASTGCLLKTVRCAKALHASEI 463 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3065.8303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3065.8303.1 >prot_H-paniculata_contig3065.8303.1 ID=prot_H-paniculata_contig3065.8303.1|Name=mRNA_H-paniculata_contig3065.8303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=578bp IEWVTVNQLDHALRVCSPMRRALDPQKLRHSREHDSVAPFAFVPTNAVAAback to top mRNA from alignment at H-paniculata_contig3065:8473..12359+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3065.8303.1 ID=mRNA_H-paniculata_contig3065.8303.1|Name=mRNA_H-paniculata_contig3065.8303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3887bp|location=Sequence derived from alignment at H-paniculata_contig3065:8473..12359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3065:8473..12359+ >mRNA_H-paniculata_contig3065.8303.1 ID=mRNA_H-paniculata_contig3065.8303.1|Name=mRNA_H-paniculata_contig3065.8303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3468bp|location=Sequence derived from alignment at H-paniculata_contig3065:8473..12359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |