mRNA_H-paniculata_contig3063.8301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3063.8301.1
Unique NamemRNA_H-paniculata_contig3063.8301.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3063.8301.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.180e-62
Identity = 90/154 (58.44%), Postives = 117/154 (75.97%), Query Frame = 1 
Query:   10 LFEVVPNGGKGDCGPSALWQLLYGGYPRVRDLKEIRQQAIDEVWKNPSKYIDFFHGDTEQERTEMSRRWCRQMCKKGTWVDQIFINAVAEAHDVNVRVLAEDEKGLYRDVQGNYAGQGNAGNKTHYILHSNGNHFEALKPLDEVIPIDDAWLEE 471
            LF+ +PNGGKGDCGP+ALW L+YGG P  RDLKE+R QA+D+V+ +P++Y+DFF G+TE  R  M  +W R M +KG W DQ+FINAVA AH+VN+R+L  ++    RD QGNYAGQG A  +T+Y+LH+ GNHFEALK L EV PID   ++E
Sbjct:   41 LFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTA-RRTYYMLHTGGNHFEALKALGEVKPIDGWKVQE 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3063.8301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L191_9PHAE1.180e-6258.44OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3063contigH-paniculata_contig3063:4184..11399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size495
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3063.8301.1prot_H-paniculata_contig3063.8301.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3063 4184..11399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.089773-CDS-H-paniculata_contig3063:4183..43181622929942.089773-CDS-H-paniculata_contig3063:4183..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 4184..4318 +
1691481079.5499432-CDS-H-paniculata_contig3063:4183..43181691481079.5499432-CDS-H-paniculata_contig3063:4183..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 4184..4318 +
1622929942.116592-CDS-H-paniculata_contig3063:6819..69721622929942.116592-CDS-H-paniculata_contig3063:6819..6972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 6820..6972 +
1691481079.5608869-CDS-H-paniculata_contig3063:6819..69721691481079.5608869-CDS-H-paniculata_contig3063:6819..6972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 6820..6972 +
1622929942.1376657-CDS-H-paniculata_contig3063:11192..113991622929942.1376657-CDS-H-paniculata_contig3063:11192..11399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 11193..11399 +
1691481079.570907-CDS-H-paniculata_contig3063:11192..113991691481079.570907-CDS-H-paniculata_contig3063:11192..11399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3063 11193..11399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3063.8301.1

>prot_H-paniculata_contig3063.8301.1 ID=prot_H-paniculata_contig3063.8301.1|Name=mRNA_H-paniculata_contig3063.8301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
QPSLFEVVPNGGKGDCGPSALWQLLYGGYPRVRDLKEIRQQAIDEVWKNP
SKYIDFFHGDTEQERTEMSRRWCRQMCKKGTWVDQIFINAVAEAHDVNVR
VLAEDEKGLYRDVQGNYAGQGNAGNKTHYILHSNGNHFEALKPLDEVIPI
DDAWLEEGPSPVGVR
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mRNA from alignment at H-paniculata_contig3063:4184..11399+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3063.8301.1 ID=mRNA_H-paniculata_contig3063.8301.1|Name=mRNA_H-paniculata_contig3063.8301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7216bp|location=Sequence derived from alignment at H-paniculata_contig3063:4184..11399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGAGTCTGTTCGAGGTAGTGCCCAACGGAGGCAAGGGCGACTGTGG
TCCGTCGGCGCTGTGGCAACTTTTATATGGAGGGTACCCTAGAGTTCGTG
ATTTGAAGGAAATTCGACAACAGGCTATAGACGAGGTGCAGAGAGAATTA
ATGGCCAATGAACAGTATAGCAAGCAAGAATTGCTTATAACGTTGAATCT
TGTGCAAACAGACGTTTTCTTTAGTGCGTAGTGAAACGTTCTACTTTCAG
CAAGCGAAAGTGTCGAAAAAAATTGCAGACGAATGATGCAAAATGATTTT
GCATTTGGGACTGTTTTTACAGTACTTTGTTTGAGGGTGGTGTGCATAAT
CGCCCCCCCCCCTCCTCAGATACATACGACCATTTTGTTTTGCTGTGCCA
CGTCTTGCTTGGCCACTTTCGTGAGCCGATGTTGGATGCTTCCTGGCCAC
AGTTGGACACCATACACTACAAGGGCTGGGGGTGAAGGGTGAAGGGTGGA
ATTAGGGTTAGGGTTACGGTTGGCACGACCGTTGGGTTAGAATTTTTTCG
CCGTTCACGAGCAATAGCCGAAGCAAACAAGAAACAAACATGGACACGAA
TGATTTGGCAGACTTATTGGCTAATACGATGATGATGGTGATGATGGTGG
TGGTGGTGGTGGTGGTGAGGACGATCCTGTTCCTCTGGGAACAAGTTCGA
GTCTCTTATTCCAACTCTTGTATTTGTGTGTGTGTGTGTGTATGTGTATG
TATATATGTGTGTGTGTGTATGTCTGTTTGTATCTAGATTAATCAACTTT
ATCTCGTTAAACAGAAATAGCTTAGGAATGTTTGGGTCAAGTACGCCACT
AGAGTATTAATCGTTGCCTGCCCACCGTATTTTTGCCATAATAGGGGCCT
CCCAGTCCAGTGACGAGGATGTTGCGACCGTTGGGGTGGCTGAGTCCTTA
TGCACCGTAAAACCCGTTGCTGGCGCACCGGGTGCAATAAAAGTTCAACT
TGATTTTCTCGAGAATAACGACCCTCCGAGTGCCGAAAAAGCACGTACGT
ACATGGTCAGATCTGGAGGACATCTTTCCAACGACACAAATTTGTTGTCT
CTAGCGTGGTAGGTTTCGAGAAGATTGGATTATGACAATTGATGGCATCC
GGTGCGTCATCAAAGGGTTCAACGGTATGCACAACATATTTTCTCTCTTG
ATTGTGACCGCCACAGTAGAGATATCAAGTGGCTGGTGGCTTAACGACCG
TTGTTTTCCGAACTTGTGCATGAAGGCGTCTGTGCTGATCTCCGTCGACC
TTCTAGTATATATAGCCATGGTTGTCCGCTGCACCATCTCCGCATGTGTA
TACGTGCACCAAAATTATTCCAAGTTGAGAATTAAAAAAAACAGGTACAG
CCATCGGCGAGGGTTCACATGTCAAATTTGTTACCTGTATCCTATGTTCC
TGTCTAGATGACGACATCTATACACGTTGGTTACGCATGCTATATAGTGA
TAGGTCATGCTCCATAACGGGCACCCCATTCCTCCTATCCCTCCCTTGCG
TCCTGTCGAGCACGCCTAGTCACTTGTCAGATGGCTAAGGTGGGCAAACT
ACTAAGGTAGTCGGTTGTTAATAAGAATCTTGGAATAACTCGGCGAAACC
TTTATCGTTTTGGATGAATGGTAGCTTAGATAAAGGATACGGGCAAGGGG
ATCATGTAGACCCCTTTATCTTAATTTTTGCCCCAAACTATTCCGAGATG
TTTACATTTTTCTGTTCCGATATTCCTCATTTTCACTCCTGCCGAGCTCC
AGGTGAGCACGGGATACCTTCGCATATTTCGATAAAAATGTTTCATCAGT
TTGGGTGAGCAGCGGCTCAAATGAATGCTTTCGACGGGGAATCATTTCAG
TGCCTTCATTTAACTAATTATTTACAAAACATGCCGAGAAATTTCCATTT
TTTCTGTTCCGATTTTCTTCGTTTTGCCTGCTACACTCGAGGAGAGTCCG
GGATACTTTCGCGCATCTCGATGAAAACGTTATTATTTGGGTGAACCATA
GTCAAATATAACCTACGAGCAAGAGGATCACCTTAACTCTGTTTCTTTAT
TTCACCCAGAGTTTTCCAAGAATTTCCCATTTTTCTGTCTCGATTTTCCT
TATCTTCACCGGATGAGTTCGGCACCCGCAGCAGCTGGGCCGCACAGTGC
TGGGCACAATGCTCAGCTTTGACAGGGTGGTTCTCGAGTTGCGAGCTGTC
AAATTTCGGCATGTTTAAAATTTGTGCCACGTATTTCTCCCTAGATTGGT
TCCATCAGAGAACTGGTTCGAACAAAACGGATTCTCTAGATATATTTTAG
TGCGGACTGTCTGTATTCTCCACCTCATTCCGCAGTGTTGCTTATTTTCG
CTGTGCTCGATGCCTGAGCGTGAAATAGGTGCATGTGTGATAGCGGACAC
CTCAGCTCTCCAACGCGTCCATCGACAAAAATGCACCTATTGCACAAAAG
TTAAAAAATGCCCGAAAAAACTCTTTTCATATGCAAAAAAAACACTCATT
ATTTACAATTTCCCAGATCAACGGTACTGAAGCTGTCTGTACCCTGCCTT
GCCGTTGAAATCGTGTTTTTGTTGTGACGGTTTCAGGTGTGGAAAAATCC
GTCCAAGTATATTGACTTCTTCCATGGAGACACCGAGCAGGAACGGACGG
AGATGTCCCGCCGGTGGTGCAGGCAGATGTGTAAGAAGGGGACGTGGGTG
GACCAAATTTTCATCAACGCAGTAGCCGAAGCGCACGATGTAAGCTGCAC
ATTTGTGTCATGATCCATGAAGCGAGATAAGATTGATTCTCCATGGTTGG
ATTGGAAACAACTAACACATAAATATCTATCTATATATCTATACATCTAT
ACATATATGTATATATATATTTTTATTTATTTATATATATATCGGTGTAC
GACCGTAGTCATGGAAAAAAAGTAATAATTAAGTCTTGATTTTTTTTTTT
TTTCCTTTAGTGTGTGTAAGAGAAGATCCTTTACTTGAAGAATCCTGTTT
CTCTTGGCAATAGCTTTTGATAAATTGTGCACTATTAATTAATAAAAAAA
TTGGTTCGTGTTTTTTTTTTTTTTTTTATCGCTTTTTTTCCCTGGGTCTG
CGATTGTGAGTGCCATTAGCGGTGGTTGCCAATTTTTCGTGTACTTCTTG
CAACCGCAAACCTTATTGCTCTGTATTGTTGGCAAACAGCAAAATGCCCG
TGAAAGTGCAGGAGTAATTTTTCCGCCGGGGGGTTACTCCTGTTTCGGAT
GTCGCCGTTGTTAGACGATTGACCACGCGTCTTCGGGAGGACGGAGCTTT
GTTCCTATCAGAGCGATTTCCTATGGATAATGACCAATTGCTCTTTCCTA
GGTTGCCGATGTGGCTCAAAAGTGTTACTCTTACCGTATCTACCTCAACC
GCCAATTTCGATCTCCTGGAACCGCTATAATAGTCTTCTCTTCGCAATGC
CAGGATTCAAATGCCTCATCATGTCCGTCGATTTTCACCTGAAGGGAGAG
GGGGGGGGGGATGGATCATGACGGAACTAGAAACACTACATACGTGAACA
ATGCCGAGGAAAAACAGATACGAGCTCGTTGAGAGTCAAGTTAGTTAGGT
AGACATGGGCAAAATGGTATTCCCGTGTTGTTGTTTTTTGTCGATGAGTA
GTGCCCCAATTCAGTCGAACACAATGTTCAGATATTAGTCCAAAGTTGTC
TTGACACTAAGGGAGGCACATTATCCGAGAGAAGTGAAGTTTCACTGTGC
GATTTAGTCATGCCGCATTTCCGGAGAATGACTACACGTTTTTTGCATAC
TCACCACACTTCACTCTGGACTAGTGCAAGTGAGGATCCTCCAAAGATGT
ACTCAAATATTCTCTTGGTTTTTACTGTTGTGGCCGACGCATTGTTCTGT
GCTATTTGCTCCCAGATTAAGGACAACTCCTAACCCTGGCTAATCCCCCC
GCCCTTAGGGACACAAGAAAAGAGCTGATCATCGATTCTTATTTTTTCGA
CGGCGGGCAAAAAACGCCAACGAACCACCCAATGATTTCCTCATACAGGA
CGAGAAAGATTACTCCCTCACTTGTACAATCGTCTCCATTGACGTTTCCA
CCATAAAACGCCTTTTCGCATGAAAAAATGGCCAACAAGTAGATAGATCC
CAGCAAACGCTTGCTCGAAATGTGAGCCCCTTAACCCTGTATTAACCAGA
CTTTGTAACGACCAAGAGGTAGATTTGTCAACCATCAGTTGTAAATAATG
ACGAATACGTCGACAGAATACCTTATTTAGATGTCCAGAGCTGGTTAGTG
CATCTCAGGTGCAAAGGGGGGAGGGGGCGGGCGCGTTCTGCCGTTTGGAG
GGCTTTATTGTGGATTTAGTGTAGAGGAAGCATGGGTAAATACCAACTTC
TTTCGTAACGGCCAGATAATAAAAAACAAAAGTACTGAACATCTAATTAG
CAGGCTAAAAGTTGCTAAGCGATTAGCGGTGAACAGCTATAAACGTCATG
AACAGGACCGGCTTTCCGGGCCATGCTCGTCGCAGAAATTTGTGCTCACA
CGGACAGCTGTTGCATCGCATAACTCGTTGTCATGCGGAAAGTTTTGACC
AAAAGGCTGTTTCATCATAAATTCCTACAAATTTATGCAGTTTTGGAACC
ATAAAAAACAATTCCGCCCCCCAGGCAAATACGAATACTTGCAAATAGTT
TTCACAAAAAACTCAAATTATTCGCCTGAATTTCAGAATAAGCGGGCACA
TACAATACAGTATCCACCCCTGTCCATTCGATTTACGAGTATTATAACCA
GTCGTGGATGGTCTGGGGCATATAGAACACACGAGCTCTCATTCTGAAAC
TCTTTTCCAGCATATGAATGCCTATTTGCGTGGAGAATGTGTCCAGGAAG
TAGATCCCAGAAAATATTTTTCGAGGTGTAAGAAATGCTTGAAACGAGGC
GAGTCGTTTGGTTTACACGGGAACTAAGCTCATTGTCCAAATGTGCGCAC
GAGAGCCACTTGCCGTTGGCAATCCTAACATCAAAGAGTAGATGTTTTTG
GGGATCACCTTGTCCAGAAGTCATTATCCAATTTTGATGCCTCAGGTGGG
ATCAACAAATGAATGTGCGCCAACTCGCAGTGTGTGAGGGTTCATTTGGT
CCTCGTTTCGTAGAATTTGGTTTCGAATTGGTGCAGAAATCCACAAAGTT
GACAAACCAAAAAATTAATGTGTTACTAGCTTCTGCATAGGTTCCGGCGA
TGGTATCAACCTCGGGAAATCTTCTCTGGTAATTTTTGCGTTCCTTCATG
GCATGAGGTATCCCGCAGCCGTTACTAATCTCTTCACCCCCCTTGATATC
GTTTTAAGCGTGTTTTGGTAAGATTCAATGACTATTGAAGCAGCGAAGCA
TGCGTGAAGGGCTCAATAGTATGTAGAGAATTTATCATTTTTTACAACCT
CCATCTTTGGCCGGCTCCATCAACTTCTGTGCACTTTTACTGTCATGAAT
ATGTCAGAGCATTTCTTATCCAAACAAAAATGCACTCCAGCATTTTTTAT
TTTTTTTTTGCGCTTTCTTTTACCTTGGGCCAAATAAACTTGGAAAACTT
CCTTGTGCAAACTATCTGAAGGACCCGGGAAAAATTTAAATAGGAGGACG
ATGGGAGCATGAACCGCCAATATTTACACGCGCGCGTGGAGAATGGCACA
GATAGTGTGCTGTGTTGCTGCACAGATAGTGTTCTGCTGTAGCCGGCTCA
ACTTTTGCCGTTTCGAGTGCGGTTCGGCTTAGCCTCGTTATCGTTCTCCG
TGTCCAACATGCTGTCATCTCTGCTCTCGCGAGCGTGCTTCGAGGGGTGG
TTGTGCTCGCCCTCATCATCTCATCCATGCCAATTGCGACAAAGGCGATG
GCGACGTTCAGCTGCTGCAAGGCTACTAGCCCCACAACTATCACCTCCGC
ATTGTTCATTTCTCTTGGCTGTACCGGCTGTGATGTGTGACGCCTGTGTG
TGTGAGTACAGTGTGCGGGTGCGTCCTGCATGGTGTTGGCGGCTGGACAC
CATCGTGAGACCCCCCGCGTTCGGTACAGCATTCGGTACAGCAAACTATA
AAATTAATAGATAGGGGATCGGCACTTTTGCCCAGCTTTTGAACCAGGTG
AAAATACGCGTAAGTTTTGCCCAATATGGCCCCGACGAGGGTCCGGGTAA
AAAAAAGAACTCAGCTTTACTTGGTGTTTTTGCTTGGATAATTCGACAAG
AAGCAAAAATTCCCGGGTAAAGAAAACATTTAAAAAAAAACTTTTGCCGT
GTTTTTTGCTGGGATAAGAAGTGGTCTCATAAATCATTGAAAATTACAAA
ATTGTAAATAGAAATCGGTTGTTGAATGCCGTATGAAGTGAAAAGCCAAG
CATGCAAAGAGAGTACTTTTTTTCTTTTTCATCGCGTTGATTTATTCGCG
ACGGGTGCATGTAATAAACCGCCGACACAAAGAGGCACGCGTCGGACGAA
GTCATTTCTCCGCCATATTGGTGATTTTACTAAATACGTTCGAAACGTTG
TAATAATAATGCTCATGTAAATGTCGTCGATGATCTGAGTTTAGAGCGAT
ATTCCCAAAAATGTTTTTGAATGATCGCTCGATTACAACAGAGCAGAATT
TGGCAGCGTATAAGATATATATAAAGAAAATAAATAAATAACGCCGCAAA
GCTTAAAAAAGGTTTGGCTCGTGCAGCGTTGCAAGCTAATTTCGCTGCGC
TGTTTTCAGCCGGTATCATACCGTATTTAACATATTTCTGACTCTTCGCG
CGCGTTTTACTTGGTCAGGGACAAACTTGAAGTTTGGTCGGAGCGTGGTT
GGGTTCTTGTTGAGTGGACACCGTATATCCATACAAGATGGTTTCAATAT
ACTCATAGATGTGTTCATGTAATAGATCTAATCTTTTTCTGTCGGACGTG
GGCAAACAGGTCAATGTCCGCGTACTCGCGGAAGATGAGAAGGGACTGTA
TAGAGACGTGCAAGGTAATTACGCGGGGCAAGGAAACGCGGGAAATAAGA
CTCACTATATACTGCACTCGAACGGAAATCACTTCGAGGCGCTCAAGCCG
CTTGATGAAGTTATCCCCATTGATGATGCATGGCTGGAAGAGGGCCCCTC
TCCCGTTGGGGTTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3063:4184..11399+

>mRNA_H-paniculata_contig3063.8301.1 ID=mRNA_H-paniculata_contig3063.8301.1|Name=mRNA_H-paniculata_contig3063.8301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig3063:4184..11399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGAGTCTGTTCGAGGTAGTGCCCAACGGAGGCAAGGGCGACTGTGG
TCCGTCGGCGCTGTGGCAACTTTTATATGGAGGGTACCCTAGAGTTCGTG
ATTTGAAGGAAATTCGACAACAGGCTATAGACGAGCAGCCGAGTCTGTTC
GAGGTAGTGCCCAACGGAGGCAAGGGCGACTGTGGTCCGTCGGCGCTGTG
GCAACTTTTATATGGAGGGTACCCTAGAGTTCGTGATTTGAAGGAAATTC
GACAACAGGCTATAGACGAGGTGTGGAAAAATCCGTCCAAGTATATTGAC
TTCTTCCATGGAGACACCGAGCAGGAACGGACGGAGATGTCCCGCCGGTG
GTGCAGGCAGATGTGTAAGAAGGGGACGTGGGTGGACCAAATTTTCATCA
ACGCAGTAGCCGAAGCGCACGATGTGTGGAAAAATCCGTCCAAGTATATT
GACTTCTTCCATGGAGACACCGAGCAGGAACGGACGGAGATGTCCCGCCG
GTGGTGCAGGCAGATGTGTAAGAAGGGGACGTGGGTGGACCAAATTTTCA
TCAACGCAGTAGCCGAAGCGCACGATGTCAATGTCCGCGTACTCGCGGAA
GATGAGAAGGGACTGTATAGAGACGTGCAAGGTAATTACGCGGGGCAAGG
AAACGCGGGAAATAAGACTCACTATATACTGCACTCGAACGGAAATCACT
TCGAGGCGCTCAAGCCGCTTGATGAAGTTATCCCCATTGATGATGCATGG
CTGGAAGAGGGCCCCTCTCCCGTTGGGGTTCGGGTCAATGTCCGCGTACT
CGCGGAAGATGAGAAGGGACTGTATAGAGACGTGCAAGGTAATTACGCGG
GGCAAGGAAACGCGGGAAATAAGACTCACTATATACTGCACTCGAACGGA
AATCACTTCGAGGCGCTCAAGCCGCTTGATGAAGTTATCCCCATTGATGA
TGCATGGCTGGAAGAGGGCCCCTCTCCCGTTGGGGTTCGG
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