mRNA_H-paniculata_contig113.830.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig113.830.1
Unique NamemRNA_H-paniculata_contig113.830.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig113.830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig113contigH-paniculata_contig113:5021..5494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.7883801-UTR-H-paniculata_contig113:5020..51461622928836.7883801-UTR-H-paniculata_contig113:5020..5146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 5021..5146 +
1691480638.831666-UTR-H-paniculata_contig113:5020..51461691480638.831666-UTR-H-paniculata_contig113:5020..5146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 5021..5146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.8053312-CDS-H-paniculata_contig113:5146..54941622928836.8053312-CDS-H-paniculata_contig113:5146..5494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig113 5147..5494 +
1691480638.8407338-CDS-H-paniculata_contig113:5146..54941691480638.8407338-CDS-H-paniculata_contig113:5146..5494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig113 5147..5494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig113.830.1prot_H-paniculata_contig113.830.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig113 5147..5494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig113.830.1

>prot_H-paniculata_contig113.830.1 ID=prot_H-paniculata_contig113.830.1|Name=mRNA_H-paniculata_contig113.830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MYKPDNKVRSSVRLYMFTWHCPLAFSLCASDACTGWGARTPNLLQLLLFS
LIRECATIPFFHCAKSIVYDHPPTNLFVPVGLQESIISSCSTARVQPGLT
AIDDFDTCPKKRHTST
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mRNA from alignment at H-paniculata_contig113:5021..5494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig113.830.1 ID=mRNA_H-paniculata_contig113.830.1|Name=mRNA_H-paniculata_contig113.830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig113:5021..5494+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGATTTAATAACCATTTACAGCTGTCGCCATCAAGTGTGCTAGTCGAG
TGCATTACGATTACAATAATGGTGATATTACAAACCAAACACGGTCATCT
GTGAGTTCATCTCATATCGCACGTACATGTACAAGCCAGACAACAAAGTT
CGGTCGTCGGTGCGTTTGTACATGTTCACTTGGCACTGCCCTCTCGCCTT
CTCCCTCTGTGCGTCGGATGCTTGCACTGGGTGGGGGGCGCGCACTCCCA
ACTTACTACAGCTGTTGCTCTTCTCTCTTATTCGTGAATGCGCAACCATA
CCGTTCTTTCACTGTGCAAAGTCCATAGTGTACGACCACCCACCTACCAA
CCTCTTTGTACCAGTAGGCTTACAGGAATCCATCATCAGCTCCTGCTCAA
CAGCGAGGGTTCAACCCGGGCTGACAGCTATTGATGACTTTGACACATGC
CCGAAAAAACGACATACATCGACT
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Coding sequence (CDS) from alignment at H-paniculata_contig113:5021..5494+

>mRNA_H-paniculata_contig113.830.1 ID=mRNA_H-paniculata_contig113.830.1|Name=mRNA_H-paniculata_contig113.830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig113:5021..5494+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAAGCCAGACAACAAAGTTCGGTCGTCGGTGCGTTTGTACATGTT
CACTTGGCACTGCCCTCTCGCCTTCTCCCTCTGTGCGTCGGATGCTTGCA
CTGGGTGGGGGGCGCGCACTCCCAACTTACTACAGCTGTTGCTCTTCTCT
CTTATTCGTGAATGCGCAACCATACCGTTCTTTCACTGTGCAAAGTCCAT
AGTGTACGACCACCCACCTACCAACCTCTTTGTACCAGTAGGCTTACAGG
AATCCATCATCAGCTCCTGCTCAACAGCGAGGGTTCAACCCGGGCTGACA
GCTATTGATGACTTTGACACATGCCCGAAAAAACGACATACATCGACTAT
GTACAAGCCAGACAACAAAGTTCGGTCGTCGGTGCGTTTGTACATGTTCA
CTTGGCACTGCCCTCTCGCCTTCTCCCTCTGTGCGTCGGATGCTTGCACT
GGGTGGGGGGCGCGCACTCCCAACTTACTACAGCTGTTGCTCTTCTCTCT
TATTCGTGAATGCGCAACCATACCGTTCTTTCACTGTGCAAAGTCCATAG
TGTACGACCACCCACCTACCAACCTCTTTGTACCAGTAGGCTTACAGGAA
TCCATCATCAGCTCCTGCTCAACAGCGAGGGTTCAACCCGGGCTGACAGC
TATTGATGACTTTGACACATGCCCGAAAAAACGACATACATCGACT
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