mRNA_H-paniculata_contig3062.8299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI) HSP 1 Score: 780 bits (2015), Expect = 6.930e-273 Identity = 426/590 (72.20%), Postives = 481/590 (81.53%), Query Frame = 1
Query: 1 MAAARKEKRWLKSVANPDLVEFFQDSQFDPSEYATGFFEQREASHATHR-HVLEGLKRQTEEALRAEVVRNYKAFMHATEEIRSMENGIQTLKDLLGSTSTTLQTFRSVRLVEA-KPPDKGPAGSRSTARNAVGDAAVDDGGEYIDVDAAGPSRGLKLPEWLDQAPIEARFFAADELEELLLERKHQAAASLIKRVREFSGNVRNATNLGRGVERIFQRVETMAAGMADRLLAEIAAANTLTVWGFREHKSNFALLIALGHGEKAAVSFVGERSAMIRRSLRLVEVTADPLSYVGILSDTFFQQVSDAVTAFLKLFCGSAKIHQRRASKSGKSMAYYQVYQGVKTCGTAPFCRLVVWMNQQIDQYALLVGRQIRTVTMGPQGIARPVRCEESKRNGSWVAGGGEDADFRLGPVASSLFSIVSLMLEESFAAAGRLTTVGFPVGVQLASRLVPDVTYFLQAYVDNVKENLMAAIKKDAFVGMECKLVPPEALAVGTVEEEERKAQKARLTSSARIMVLEARDILDYALVLLEPPSPEEEALAARFVSESSCKFRVINRPNFATSYYTRDEFLELEPIIVASLEQLLRTYLK 1764
M++ RK+KRWLKSVA+PDLV FF+DSQFD EYA GFFEQREASHA HR LEGLKRQTE ALRAEVVRNY+AFMHATEEIRSME G+QTLKDLLGST+ TLQ+FR V LVE KP +K PA +RS +R SRGLKLPEWLDQAPI ELEELLLERKHQ AA+LI+RVR+FS N++NATNLGRGVERIFQ+VETMAAGMA+RLLAEI+AANTLTVWGFREHKSNFALLI+LG EKAA+ FVGERSAMIRRSLRLVEVTADPLSYVG+LS+TFF QV DAV+AFLKLFC SA+IH+RR+ K+GKS AYYQVYQGVK CGTAPFCRLVVW+NQQIDQYA+L+GRQIR +TMGPQ I R E+S + A GEDA FRLGPVASSLFSIVSLMLEE FAAA L T+GFPVGVQLASRLVPDVT+FL +Y+D+VK+NL+ AI+KD FVG+ C LV PEAL VGT EEE+++A++A+LTSSARI+VLE RDILDYALVLLEPP PE EA +A SS V P A SYYTRDEFLELEP+IV SL++LLRTYLK
Sbjct: 1 MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPA-ARSNSRAVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPI--------ELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQRITR----EQSSKKSGAAASSGEDAGFRLGPVASSLFSIVSLMLEEGFAAAAALNTMGFPVGVQLASRLVPDVTHFLASYIDSVKDNLVDAIRKDPFVGVSCPLVRPEALCVGTQEEEDQQAKRAQLTSSARILVLELRDILDYALVLLEPPPPEPEAFSAEDAGVSS-PGSVEEEPPEAASYYTRDEFLELEPVIVTSLDKLLRTYLK 576
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: A0A835ZCG0_9STRA (Exo84_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG0_9STRA) HSP 1 Score: 414 bits (1063), Expect = 2.920e-134 Identity = 260/569 (45.69%), Postives = 333/569 (58.52%), Query Frame = 1
Query: 52 DLVEFFQDSQFDPSEYATGFFEQREASHATHR-HVLEGLKRQTEEALRAEVVRNYKAFMHATEEIRSMENGIQTLKDLLGSTSTTLQTFRSVRLVEAKPPDKGPAGSRSTARNAVGDA------AVDDGGEYIDVDAAGPSRGLKLPEWLDQAPIEARFFAADELEELLLERKHQAAASLIKRVREFSGNVRNATNLGRGVERIFQRVETMAAGMADRLLAEIAAANTLTVWGFREHKSNFALLIALGHGEKAAVSFVGERSAMIRRSLRLVEVTADPLSYVGILSDTFFQQVSDAVTAFLKLFCGS-AKIHQRRASKSGKSMAYYQVYQGVKTCGTAPFCRLVVWMNQQIDQYALLVGRQIRTVTMGPQGIARPVRCEESKRNGSWVAGGGEDADFRLGPVASSLFSIVSLMLEESFAAAGRLTTVGFPVGVQLASRLVPDVTYFLQAYVDNVKENLMAAIKKDAFVGMECKLVPPEALAVGTVEEEERKAQK--ARLTSSARIMVLEARDILDYALVLLEPPSPEEEALAARFVSESSCKFRVINRPNFATSYYTRDEFLELEPIIV 1728
DL+EFF D FD EY F+E AS A+ R LE L+RQTEE+LR EVVRNY+ FMHAT +I+SME I L++LL + +TTL TF+S+RLVE P S+ + NA G A A GG+ G GLKLPEWLD+AP ELEELLLERKH+AA LI++V+ F+ NVRNATNLG GV IF + + MAA ++ RL+ EI NT T WGFREHK NF LLI LG+ + AA + V ERSA+IRRSL +VE TADPL+YV +S TFF Q+ D V AFLKLFC + H+ RA+K+G+S AY QVY G+K CG+APFCRLV+W++ Q+DQYA LVGRQI V +G A R ++ + + PVA++LF+ VSLMLE++F AA RL GFPVGV LASRL FL+A+ ++ ++ A +DA E + PPEAL +G + Q L SSA V EAR L+ SYY+R F +L+P ++
Sbjct: 2 DLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDP-----ASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRG---GLKLPEWLDKAPT--------ELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQLMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLG----AHAARAADAALPRTAPPPKSPPPGDPVDPVAATLFATVSLMLEDAFGAAARLNRHGFPVGVALASRLHAHAGAFLEAFARRARDAVLEAASRDALAVHEYRFAPPEAL-LGPAGGPQWADQTLVVWLNSSAAAAVCEARSFLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSYYSRAHFADLQPQVL 549
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: A0A6H5J6Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Z2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 5.370e-27 Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1
Query: 715 LTVWGFREHKSNFALLIALGHGEKAAVSFVGERSAMIRRSLRLVEVTADPLSYVGILSDTFFQQ 906
LTVWGFREHKSNFALLI+LG EKAA+ FVGERSAMIRRSLRLVEVTADPLSYVG+LS+TFF Q
Sbjct: 6 LTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ 69
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: W7TYT0_9STRA (Cullin repeat-like-containing domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT0_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 7.790e-11 Identity = 70/293 (23.89%), Postives = 135/293 (46.08%), Query Frame = 1
Query: 430 DVDAAGPSRGLKLPEWLDQAPIEARFFAA-DELEELLLERKHQAAASLIKRVREFSGNVRNATNLGRGVERIFQRVETMAAGMADRLLAEIAA----ANTLTVWGFREHKSNFALLIALGHGEKAAVSFVGERSAMIRRSLRLVEVTADPLSYVGILSDTFFQQVSDAVTAFLKLFCGSAKIHQRRASKSGKSMAY----YQVYQG--VKTCGTAP-------------FCRLVVWMNQQIDQYALLVGRQIRTVTMG----PQGIARPVRCEESKRNGSWVAGGGEDADFRL 1224
D++ GPS G P L++ + A AA ++L++ ++E + A + I ++R ++ + + + +RV + +A R++ E+ A AN ++ F + L+AL E A FV + ++ R+L E + +PL YV +L++ FF ++DA +F LF S + A +G + ++ + V+ P F RLV+W+ +++ Q+A+L+GRQ+R++ + R ++ K +AG G D R+
Sbjct: 244 DLEGKGPS-GQPAPNSLERDDLPAWVAAAMEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQRRVTSKGKEIAGRIVRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFTVSVSEGRSEAITAGGTPITPPPNFEAFTSTDVENQRGGPMSTPWPSVRPPECFLRLVLWVEEEVRQFAVLLGRQLRSLRQDWLLYRLRVEGKARGKDGKLAKGIIAGSGGDGTVRV 535
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: A0A4D9D5U3_9STRA (Exo84_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5U3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.420e-10 Identity = 66/279 (23.66%), Postives = 126/279 (45.16%), Query Frame = 1
Query: 454 RGLKLPEWLDQAPIEARFFAADELEELLLERKHQAAASLIKRVREFSGNVRNATNLGRGVERIFQRVETMAAGMADRLLAEIAA----ANTLTVWGFREHKSNFALLIALGHGEKAAVSFVGERSAMIRRSLRLVEVTADPLSYVGILSDTFFQQVSDAVTAFLKLFCGSAKIHQRRASKSGKS----MAYYQVYQG----------VKTCGTAP-----FCRLVVWMNQQIDQYALLVGRQIRTVTMG----PQGIARPVRCEESKRNGSWVAGGGED 1209
RG LP W+ A ++L++ ++E + A + I ++R ++ + + + RV + +A R++ E+ A AN ++ F + L+AL E A FV + ++ R+L E + +PL YV +L++ FF ++DA +F LF S + A +G + ++ + + T G + F RLV+W+ +++ Q+A+LVGRQ+R++ +A + ++ K +AG G D
Sbjct: 261 RGDDLPVWVAAA--------LEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHSQDLQGRVTSKGKEIAGRIIRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFAVSVSEGRSEAITAGGTPITPSPNFEAFTSTDVENQRGGPMSTPGPSVRPPKCFLRLVLWVEEEVRQFAVLVGRQLRSLRQDWLLYRLRVAGKAQGKDGKLAKGMIAGSGGD 531
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Match: A0A6H5K667_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K667_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 4.370e-5 Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1
Query: 1675 ATSYYTRDEFLELEPIIVASLEQLLRTYLK 1764
A SYYTRDEFLELEP+IV SL LLRTYLK
Sbjct: 4 AASYYTRDEFLELEPVIVTSLNMLLRTYLK 33 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3062.8299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3062.8299.1 >prot_H-paniculata_contig3062.8299.1 ID=prot_H-paniculata_contig3062.8299.1|Name=mRNA_H-paniculata_contig3062.8299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=588bp MAAARKEKRWLKSVANPDLVEFFQDSQFDPSEYATGFFEQREASHATHRHback to top mRNA from alignment at H-paniculata_contig3062:301..14534- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3062.8299.1 ID=mRNA_H-paniculata_contig3062.8299.1|Name=mRNA_H-paniculata_contig3062.8299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14234bp|location=Sequence derived from alignment at H-paniculata_contig3062:301..14534- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3062:301..14534- >mRNA_H-paniculata_contig3062.8299.1 ID=mRNA_H-paniculata_contig3062.8299.1|Name=mRNA_H-paniculata_contig3062.8299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig3062:301..14534- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |