mRNA_H-paniculata_contig3060.8293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3060.8293.1 vs. uniprot
Match: D8LMX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX6_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 2.200e-127 Identity = 321/864 (37.15%), Postives = 445/864 (51.50%), Query Frame = 1
Query: 1 CAGSKGSSIKYTVTQGLAATTSAIERDFASPTEEQARIMGVESVVEGLQWDLSTKQLQQAFQVPGHHLLCTKRWTMRCYDGRQRLLSAALLAIIVETKANANTAATRESGRNVGQDFTIPKINLTENQTTSPMGPIWSDTTGDGSSKTWGAGVPPPTALEEQS-RNKANEERQAVQRNIRTCEPSPESGINRAVSDDGVDAVGISHGLYR---AGYVVFRENLTHAEVGALVGPEFCWRNPLEENI-SIRNLNS-SWMACLGSLCGRMRDSSASREATVVDKTLHQLPTSLDDSLQQPEAELPTSAVSNDNLDTPADESEPNANTNGQCPSPTATGTASVADVTV-----PFPSARKTFGHGTSKHTQET----NPSCRAQIEA-PTVRIRNVREDAAEVVRLSLDRTLMRVGARVPWGPRYRGRFAKVLFTVCLGIGCCGLEFIGVSASPTGNHGVHGCWKCVATDRDLARILRPG----VWSFAHSRLRDKSFNPERCTAQLQLEGELTYACTFLARKAFRLALTVPGGVTLLIAGVTQPAGREIPWPQDVEEDSKRVTASINLQKAWRGCAGRKHARWVQMDREGRKRLARLRADAQAEQERVRALEETENALNEDRGSRAQTKLAAVVRGRRVRRAASERRA---CPEIELARNKHARKYADAAFEPNSTGQVAASPSTSPISSAGSLLSTQHEALTEAKPEYLFYCDEGAEGVPFT-TAPGETRLERTLVIDGTQVSLTAYVKEAKE-----------RDTGSPFEMDVEAVDMKTRRSSRLVLKEDDFEAIKRLTAVAAEGHAEVGGGSCGPGGDTSTLAERARIAFGAAVKSLTVFNSRKRDLFILSYKGRKVAAQH 2487
C S+G S K+ +Q LAAT+ +IE+ ASP+ EQA +MGVESVVEG++W+LST+QLQ AF+ G HLL +++ D QR A L AI+ + +T + E R P ++ + G + D ++ G + T++E +S + A EE + R P P+ RA D G A Y A VF +LTH+EV ALVGP W++P +E ++R+L + SW ACL SLC R+R ++ + +A + TL P + + ++ V D L P+D S+ + N + P + + + P P+ K S +T R ++A P +R + R E + LD+T+++VGARVPWG YRGRFAK+LFTV LG GC GL+F+ S SP + + GCW+C ATDRDLAR L PG V R+R S++P+RC A+L GEL +AC +ARKAFRL + VPGGV L +AG GRE+ WPQDVEED + ASI LQ+ WRGC RK RW++++REG +RL+RLR A AE+++ + + L E+R +RAQ LA R R R+ S RRA P+ E+ R+ A + A P ++ A+ + + S G D+ G+ T TAPG RLE + IDGT+V LTA+VKE +D+ P EM + AVD K+RRSSRL LK D I TST + A A VK LTVFNSR++DLFILSYKG+KV A H
Sbjct: 7 CLPSRGDSAKHAASQALAATSRSIEKTAASPSPEQAHVMGVESVVEGVEWNLSTEQLQ-AFRASGSHLL-RRKYVSIGRDEHQRFFVAELSAIV--RVVSLDTGGSAEGARTASGRSDTPSLDFQRTTSDPANGCEGGSSHVDAATAMNGCTL---TSIEARSGSSSALEESEHRVHVPRAPPPLPDIASGRAHLDPGCTAASTDGRCYHQRPAAPAVFALDLTHSEVDALVGPSLAWKDPFKEGSDTVRDLEATSWAACLASLCRRLRATAKAVDAGR-EGTLDGRPPVVGKQAFASDNTARSTGV--DPLVGPSDPSDDPSALNEERPQQRSLREELPVNTAIGGQGSPVPTTAKKIFSAVSPWDGDTVSLDESQNRQAVQALPLLRRKPARRKTGEDL-FWLDKTILKVGARVPWGRLYRGRFAKMLFTVSLGKGCRGLDFVATSNSPMADPMLRGCWECQATDRDLARYLSPGRCGAVEGETRRRVRRDSYDPQRCAAELHERGELVWACAEIARKAFRLVMVVPGGVVLSLAGAATAGGREVAWPQDVEEDRALIKASIELQRWWRGCISRKRTRWLRIEREGMRRLSRLREQAVAEKKKAELEAKAKLLLEEERRNRAQVVLATAARVRLARKEVSRRRAEQAAPQCEVDRDVAAEREEAANSIPPRQVELPATTADDVVVSGG------------------IASDDPEVGISATDTAPGLARLETVVTIDGTEVHLTAHVKEVVGTDAARGSGGGGKDSNKPLEMLLVAVDKKSRRSSRLSLKAPDITEIVASHXXXXXXXXXXXXXXXXXXVRTSTGVQG---ALRAVVKKLTVFNSRRKDLFILSYKGKKVTAPH 838
BLAST of mRNA_H-paniculata_contig3060.8293.1 vs. uniprot
Match: A0A6H5K332_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K332_9PHAE) HSP 1 Score: 392 bits (1007), Expect = 1.760e-119 Identity = 320/887 (36.08%), Postives = 440/887 (49.61%), Query Frame = 1
Query: 16 GSSIKYTVTQGLAATTSAIERDFASPTEEQARIMGVESVVEGLQWDLSTKQLQQAFQVPGHHLLCTKRWTMRCYDGRQRLLSAALLAIIVETKANANTAATRESGRNVGQDFTIPKINLTENQTTSPMGPIWSDTTG-DGSSKTWGAGVPPPTALEEQSRNKANEERQAVQRNIRTCEPSPESGINRAVSDDGVDAVGISHGLYR---AGYVVFRENLTHAEVGALVGPEFCWRNPL----------------------------EENISIRNLNS-SWMACLGSLCGRMRDSSASREATVVDKTLHQLPTSLDDSLQQPEAELPTSAVSNDNLDTPADESEPNANTNGQCPSPTATGTASVADVTV-----PFPSARKTFGHGTSKHTQETNPSCRAQ----IEA-PTVRIRNVREDAAEVVRLSLDRTLMRVGARVPWGPRYRGRFAKVLFTVCLGIGCCGLEFIGVSASPTGNHGVHGCWKCVATDRDLARILRPG----VWSFAHSRLRDKSFNPERCTAQLQLEGELTYACTFLARKAFRLALTVPGGVTLLIAGVTQPAGREIPWPQDVEEDSKRVTASINLQKAWRGCAGRKHARWVQMDREGRKRLARLRADAQAEQERVRALEETENALNEDRGSRAQTKLAAVVRGRRVRRAASERRA---CPEIELARNKHARKYADAAFEPNSTGQVAASPSTSPISSAGSLLSTQHEALTEAKPEYLFYCDEGAEGVPFT-TAPGETRLERTLVIDGTQVSLTAYVKEAKERDTG-----------SPFEMDVEAVDMKTRRSSRLVLKEDDF-EAIKRLTAVAAEGHAEVGGGSCGPGGDTSTLAERARIAFGAAVKSLTVFNSRKRDLFILSYKGRKVAAQH 2487
G S+K+ Q LAAT+ +IE+ ASPT EQA +MGVESVVEG++W+LST+QLQ AF+ G HLL +++ D QRL A L AI+ + N +A E R P ++ + TT P T+ D ++ T G + A A EE + R P P+ RA D G A Y A V+ +LTH+EV ALVGP W++P E + ++R+L + SW ACL SLC R+R ++ + +A + P + TS D P+D S+ ++ N + P D V P P K S +T +Q ++A P +R R R E + LD+T+++VGARVPWG +RGRFAK+LFTV LG GC GL+F+ S SPT + + GCW+C ATDRDLAR L PG V R+R S++P+RC A+L GEL +AC +ARKAFRL + VPGGV L +AG GRE+ WPQDVEED + ASI LQ+ WRGC RK RW++M+REG +RL+RLR A A +++ + + L+E+R +RAQ LA R + R+ S RRA + ++ R+ A + A P ++ A+ + ++ +G + S D+ G+ T TAPG RLE + IDGT+V LTA+VKE + D P EM + AVD K+RRSSRL LK D E + A++ G G A A VK LTVFNSR++DLFILSYKG++V A H
Sbjct: 48 GDSVKHAANQALAATSRSIEKTVASPTPEQAHVMGVESVVEGVEWNLSTEQLQ-AFRASGPHLL-RRKYVSIGRDEHQRLFVAELSAIVRVASLDTNGSA--EGARTASGRIDTPLLDF-QRTTTDPANRCEGRTSHVDAATATKGFTLTCIEARSGSGSGSALEESEHRVHVPRAPPPLPDIASGRAHLDSGCTAASTDGRCYHQRPAAPAVYAVDLTHSEVDALVGPSLAWKDPFKRIPRYLSRESHADRSTANSNTLKTLKKEGSDTVRDLEATSWTACLDSLCRRLRATAKAVDAGREGALDGRPPVVGKQAFASDNTARSTSV---DPSIGPSDPSDDSSALNEERPQQRYLREELPVDTAVEGQGCPVPDTAKKMFSVASPWDGDTGSLDESQNRQAVQALPLLRRRPARHKTGEDL-FWLDKTILKVGARVPWGRLHRGRFAKMLFTVSLGKGCRGLDFVATSNSPTADPMLRGCWECQATDRDLARYLSPGRCGAVEGETRRRVRHDSYDPQRCAAELHERGELVWACAEIARKAFRLVMVVPGGVVLSLAGAPIAGGREVAWPQDVEEDRALIKASIELQRWWRGCISRKRTRWLRMEREGMRRLSRLREQAVAVKKKTELEAKAKLLLDEERRNRAQVVLATAARVQVARKEVSRRRAEQAARQCQVDRDVAAEREEAANSMPLRQVELPAA-AADDVALSGGIAS-----------------DDPEVGISATDTAPGLARLETVVTIDGTEVHLTAHVKEVVDTDAARGSGDGGEDHKKPLEMLLVAVDKKSRRSSRLSLKAPDIAEIVASHXXXXXXXXAKITTGVQG--------------ALRAVVKKLTVFNSRRKDLFILSYKGKQVTAPH 893 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3060.8293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3060.8293.1 >prot_H-paniculata_contig3060.8293.1 ID=prot_H-paniculata_contig3060.8293.1|Name=mRNA_H-paniculata_contig3060.8293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=792bp MGVESVVEGLQWDLSTKQLQQAFQVPGHHLLCTKRWTMRCYDGRQRLLSAback to top mRNA from alignment at H-paniculata_contig3060:4708..12798+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3060.8293.1 ID=mRNA_H-paniculata_contig3060.8293.1|Name=mRNA_H-paniculata_contig3060.8293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8091bp|location=Sequence derived from alignment at H-paniculata_contig3060:4708..12798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3060:4708..12798+ >mRNA_H-paniculata_contig3060.8293.1 ID=mRNA_H-paniculata_contig3060.8293.1|Name=mRNA_H-paniculata_contig3060.8293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4752bp|location=Sequence derived from alignment at H-paniculata_contig3060:4708..12798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |