mRNA_H-paniculata_contig113.829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig113.829.1
Unique NamemRNA_H-paniculata_contig113.829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig113.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig113contigH-paniculata_contig113:2..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2786
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig113.829.1prot_H-paniculata_contig113.829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig113 1891..3306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.6762226-UTR-H-paniculata_contig113:1..8301622928836.6762226-UTR-H-paniculata_contig113:1..830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 2..830 +
1691480638.798366-UTR-H-paniculata_contig113:1..8301691480638.798366-UTR-H-paniculata_contig113:1..830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 2..830 +
1622928836.6949859-UTR-H-paniculata_contig113:1768..18901622928836.6949859-UTR-H-paniculata_contig113:1768..1890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 1769..1890 +
1691480638.8072293-UTR-H-paniculata_contig113:1768..18901691480638.8072293-UTR-H-paniculata_contig113:1768..1890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 1769..1890 +
1622928836.732573-UTR-H-paniculata_contig113:3306..37251622928836.732573-UTR-H-paniculata_contig113:3306..3725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 3307..3725 +
1691480638.8231568-UTR-H-paniculata_contig113:3306..37251691480638.8231568-UTR-H-paniculata_contig113:3306..3725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig113 3307..3725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.7149491-CDS-H-paniculata_contig113:1890..33061622928836.7149491-CDS-H-paniculata_contig113:1890..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig113 1891..3306 +
1691480638.8151534-CDS-H-paniculata_contig113:1890..33061691480638.8151534-CDS-H-paniculata_contig113:1890..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig113 1891..3306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig113.829.1

>prot_H-paniculata_contig113.829.1 ID=prot_H-paniculata_contig113.829.1|Name=mRNA_H-paniculata_contig113.829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=472bp
MAPTPCDGAGCSKKPEYGVSGSRKAEFCFHHATAGMVNVCSKQCCSRGCS
KQPLYGASGSRKATFCSQHATAGMVHLYKQECGNNDCSKKASYGVSGSRK
AEFCSQHATSGMVDVVNRKCANESCSKQPSYGISGSRKAEFCSPHATAGM
VNVVNRKCANESCSKIPTYGVSCGRKAEFCSQHATAGMVDVVNRKCANKS
RFKQALYRISSNRKAVFCSQHATAGMTNVKNNKGRTKRPSHGLAGSRTVE
LSPQHAREGMMEVANQNCDNEGYSDGSRHRVPVHDRDSCPPHTVDPTANN
ASNASGLAQERDDYRGGLIDSGIGSVLDNGRGGKRSYPDGSGSGSSGGVV
SDRRVCASIRQGDMMQSPVLGKAVVVFQEVNARMKVELVDSPSIGADGGA
RGRSELVVPWIDWSSVGCSAGDRESAERLGSGTTTTPVVSAHPTAMGRVV
SREAEAEANVKLELGVCSPHP*
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mRNA from alignment at H-paniculata_contig113:2..3725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig113.829.1 ID=mRNA_H-paniculata_contig113.829.1|Name=mRNA_H-paniculata_contig113.829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3724bp|location=Sequence derived from alignment at H-paniculata_contig113:2..3725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGACTTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTG
CCCGTTCGGGCGTAGGTCCGTGGGTTATCTCTATTTACACATGTGTGGCT
CGAGGAGCTAGCTGCGGATGTCAATGAATAATGGCGAAGGGTCAAGGTTT
ACCTCGGACAAATACGACTACTTGCAAATGGTTTCCACAAAAAACTGAAT
ATATTCGCCTGAGTTTCAGAATAAGCTCGTGTAGTCAATGTGCCCCACAC
TATCCAGGACTGCTAATAATACTCACAAATCGAATGGACAGGGGTGTTTT
TTTTTGCCTGTCTGCTCGATCTGAAACTCAGGCGAATACTTCCAGTTTTT
TGTACTGTAAAACCATTTGCAAATATTCGTGTTTGTCCAGTTGATGAAAG
TTATACCGTTTTCTTGACCACTTCCCAAATTGAACGTAACCCCTCGCCCC
TTCTTTTTGCTCCGCTATTCTCGCATAGTTCGGATATTCCGAGATTTATG
CGAAAAATGCCTATTCTTCGTCTAGCTTGAAAAGCTGTTCCACATCTTGG
CTACAAATGTCCGTTCGGGACGTCTCGGGCTTCTTCATGAGCAAGAACTT
TCCTTCCTGAAGTCGGGAAAACGGGTCTGAGAAACTTCGTCACTTGGAGA
AATAGAGCCTTATCTGATGCGGGGTCCAAGTCACAGCCTTTGGCGAGGCC
AAACTGAACTTCTGTACCCGCTGCTGAAGGACCCACCGCGAGAGGTGGAG
AAGGCAGAAATTATACCGCTGTGAAGATTGTTGTGGTTCAAAGGTTGTGT
CATCCTCTTCTATACTCTACACTTGATGGGTGAGCTGTCTGTACCTTAAC
CTATCCAAAATCATCAACCGTCAACTGGTACATCTTTTTATGACTGGCGA
CATGTCATGTTCATGTGTTCTTCCTCCGCACCTGTACTTCGGTGCTTTAT
GCTTCACTCTTTACTCTACTGACTGTGCTCCTAGTACTGCAATGTACTGT
GCCGCACCGCACCGCACCGTGCCGTGCCGTCCTGCTCTAATCCGCTGTGC
TTGTTCTGTACTGAACAATTTCGCACTGACAGTTCTTCTTTTCGTATGAT
AGCCTAATTGTATCTACTTTCTCTGTCCTGTAAGTTTGTAGCATTATGGT
TATTTGTTAATACCTTTGTCAAATTTGAGATTCAAAACAATGCGAGCATA
GTATTCGAAACCCACAACTTCGGCTTACACGCACACACACATTTTCACAA
TAATGTTTCAATACAAAATAGTGGAGAGAATGGTATCTGAACCGATCTTT
TTTCGAAATGAAAACTTTTTTCGAAATAGCAAAATCGACCAAAAATGGCC
AAAAATGATGGATAATCGGCGATGTCGTCTTAACAAGACGTCCGGCGAAA
ATAGATTTTTTTTTGCATTGGATTCCTTGGCATTGCTTCCTACTATAGTC
TGGCCGGCCCAATTTGGTTGCACTTGACGATTAAACGTTCAACAGCTGAT
AATAGAAGTTTAGGATCGCTATCGTCTTAGGATAAGAATCTTTCAGCCAA
AGACCCCGCAATATCTCCGATCGCAAAGGGCCCAGGGGCGTGAGCACTTG
TTTTCTCGAACAGCTATCGAACGCACCTACTTGGATAAATTTGGATTAGT
GAAATTCGAGCTATTGGAAATCCTCAAGACGAAAGCTGTCCTAAACTTCT
ATAATCGACTGTTTGTTGACAGCATTGCCTTCCTCTGGAATATCGCGTTT
TCGCTGTGGTTGTTCAGGGACCTGTGGGAGCTACATAATCGAGCTTCTCC
GTTTCCGAGGCTGTCGCTAACGGTGTCGGTGCTTGCAGCAGTCGACCTTG
TGCACGTGTTGATCACAGGAATTTTATGTTGTGAAGAGGATGGCTCCTAC
ACCATGCGATGGAGCAGGGTGCTCAAAGAAACCAGAGTACGGTGTATCGG
GGAGCAGGAAGGCGGAATTTTGTTTCCACCATGCTACCGCGGGCATGGTT
AACGTATGCAGTAAGCAGTGCTGTAGTAGGGGCTGCTCCAAGCAGCCGTT
GTACGGTGCATCGGGTAGCCGGAAAGCGACGTTCTGCTCCCAACATGCTA
CGGCAGGCATGGTTCACTTATACAAGCAGGAATGTGGTAACAATGACTGC
TCCAAGAAGGCGTCGTATGGCGTATCGGGTAGCCGGAAAGCGGAGTTCTG
TTCCCAACATGCTACTTCTGGCATGGTTGATGTGGTCAACAGGAAGTGCG
CCAACGAGAGCTGCTCCAAGCAGCCGTCGTATGGTATATCGGGTAGCCGG
AAAGCGGAGTTCTGCTCCCCACATGCTACGGCGGGCATGGTGAATGTGGT
TAACAGGAAGTGTGCCAACGAGAGCTGCTCCAAGATCCCAACGTATGGCG
TATCGTGTGGCCGGAAAGCGGAATTCTGCTCACAACATGCTACTGCTGGC
ATGGTTGATGTGGTCAATAGGAAGTGCGCCAACAAGAGCCGCTTCAAGCA
GGCGTTGTACCGTATATCGAGCAACAGAAAAGCGGTGTTTTGCTCCCAAC
ATGCTACGGCGGGAATGACAAATGTAAAAAACAACAAGGGTCGCACGAAG
AGGCCATCACATGGCTTAGCCGGCAGCAGGACGGTGGAGTTGTCTCCTCA
ACACGCCAGGGAGGGTATGATGGAAGTAGCGAACCAGAACTGTGACAATG
AGGGCTACTCTGATGGTAGTAGGCACCGTGTGCCTGTTCATGACCGAGAT
TCGTGCCCCCCGCATACCGTAGACCCAACGGCCAACAACGCGTCCAACGC
ATCAGGGCTTGCCCAAGAGAGGGATGATTACAGGGGCGGCCTGATTGATA
GTGGGATCGGTAGCGTTTTAGATAATGGACGGGGGGGGAAACGAAGCTAT
CCCGACGGCAGCGGTTCGGGTTCAAGCGGCGGTGTTGTTTCTGACCGCCG
TGTGTGTGCCAGTATCAGGCAGGGCGATATGATGCAGTCGCCGGTCTTAG
GAAAAGCTGTCGTGGTGTTTCAAGAGGTAAATGCACGCATGAAGGTAGAG
TTAGTAGACTCTCCTTCCATCGGTGCTGACGGTGGGGCGAGAGGGCGTAG
TGAACTCGTCGTGCCCTGGATTGATTGGAGCAGCGTTGGTTGCAGTGCTG
GCGACCGGGAAAGTGCGGAGCGGCTAGGCAGTGGTACTACTACAACACCA
GTGGTATCAGCACACCCTACGGCAATGGGTCGAGTGGTGTCTCGAGAGGC
CGAGGCAGAGGCCAACGTAAAATTGGAATTAGGAGTCTGCTCTCCCCACC
CATAACGTCCATGATGAGGGGAGGAAATGGGTCGCGCAAGTATTCGATTA
CGGTTAGTTATCGTGGACTGCGTGCCACGCTTGGGAATCATTCGGGATCA
CCCCGAGAGTGCAGGGGCAATATCTTCTGTGCTTGTGTGCAATTTTTTGC
GCGTCGTTAAGCCGGGTTGTGTCTTGTTTTAGTTGATGGTATCGTTGGAT
CTTGCAGTATTTCTTCAGCGTGCGTTTCGTGCCGCTGATGCCCTGTAAAA
GGGATTTTCTCGCGGTAACTTCGAGAGCCTTTCAGTAAGTGCTGTTGTGT
TGGAGGGTTGGAGGGTTGGTATCCAGACCAGTGAGAGAAGAATCACTCTT
CGCACGAATCTTGCTTTTATTCCTTATGTGGCGAGGAATATGTTGTGCCG
CAACAACGTTGGGGTAAACAAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig113:2..3725+

>mRNA_H-paniculata_contig113.829.1 ID=mRNA_H-paniculata_contig113.829.1|Name=mRNA_H-paniculata_contig113.829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2832bp|location=Sequence derived from alignment at H-paniculata_contig113:2..3725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCCTACACCATGCGATGGAGCAGGGTGCTCAAAGAAACCAGAGTA
CGGTGTATCGGGGAGCAGGAAGGCGGAATTTTGTTTCCACCATGCTACCG
CGGGCATGGTTAACGTATGCAGTAAGCAGTGCTGTAGTAGGGGCTGCTCC
AAGCAGCCGTTGTACGGTGCATCGGGTAGCCGGAAAGCGACGTTCTGCTC
CCAACATGCTACGGCAGGCATGGTTCACTTATACAAGCAGGAATGTGGTA
ACAATGACTGCTCCAAGAAGGCGTCGTATGGCGTATCGGGTAGCCGGAAA
GCGGAGTTCTGTTCCCAACATGCTACTTCTGGCATGGTTGATGTGGTCAA
CAGGAAGTGCGCCAACGAGAGCTGCTCCAAGCAGCCGTCGTATGGTATAT
CGGGTAGCCGGAAAGCGGAGTTCTGCTCCCCACATGCTACGGCGGGCATG
GTGAATGTGGTTAACAGGAAGTGTGCCAACGAGAGCTGCTCCAAGATCCC
AACGTATGGCGTATCGTGTGGCCGGAAAGCGGAATTCTGCTCACAACATG
CTACTGCTGGCATGGTTGATGTGGTCAATAGGAAGTGCGCCAACAAGAGC
CGCTTCAAGCAGGCGTTGTACCGTATATCGAGCAACAGAAAAGCGGTGTT
TTGCTCCCAACATGCTACGGCGGGAATGACAAATGTAAAAAACAACAAGG
GTCGCACGAAGAGGCCATCACATGGCTTAGCCGGCAGCAGGACGGTGGAG
TTGTCTCCTCAACACGCCAGGGAGGGTATGATGGAAGTAGCGAACCAGAA
CTGTGACAATGAGGGCTACTCTGATGGTAGTAGGCACCGTGTGCCTGTTC
ATGACCGAGATTCGTGCCCCCCGCATACCGTAGACCCAACGGCCAACAAC
GCGTCCAACGCATCAGGGCTTGCCCAAGAGAGGGATGATTACAGGGGCGG
CCTGATTGATAGTGGGATCGGTAGCGTTTTAGATAATGGACGGGGGGGGA
AACGAAGCTATCCCGACGGCAGCGGTTCGGGTTCAAGCGGCGGTGTTGTT
TCTGACCGCCGTGTGTGTGCCAGTATCAGGCAGGGCGATATGATGCAGTC
GCCGGTCTTAGGAAAAGCTGTCGTGGTGTTTCAAGAGGTAAATGCACGCA
TGAAGGTAGAGTTAGTAGACTCTCCTTCCATCGGTGCTGACGGTGGGGCG
AGAGGGCGTAGTGAACTCGTCGTGCCCTGGATTGATTGGAGCAGCGTTGG
TTGCAGTGCTGGCGACCGGGAAAGTGCGGAGCGGCTAGGCAGTGGTACTA
CTACAACACCAGTGGTATCAGCACACCCTACGGCAATGGGTCGAGTGGTG
TCTCGAGAGGCCGAGGCAGAGGCCAACGTAAAATTGGAATTAGGAGTCTG
CTCTCCCCACCCATAAATGGCTCCTACACCATGCGATGGAGCAGGGTGCT
CAAAGAAACCAGAGTACGGTGTATCGGGGAGCAGGAAGGCGGAATTTTGT
TTCCACCATGCTACCGCGGGCATGGTTAACGTATGCAGTAAGCAGTGCTG
TAGTAGGGGCTGCTCCAAGCAGCCGTTGTACGGTGCATCGGGTAGCCGGA
AAGCGACGTTCTGCTCCCAACATGCTACGGCAGGCATGGTTCACTTATAC
AAGCAGGAATGTGGTAACAATGACTGCTCCAAGAAGGCGTCGTATGGCGT
ATCGGGTAGCCGGAAAGCGGAGTTCTGTTCCCAACATGCTACTTCTGGCA
TGGTTGATGTGGTCAACAGGAAGTGCGCCAACGAGAGCTGCTCCAAGCAG
CCGTCGTATGGTATATCGGGTAGCCGGAAAGCGGAGTTCTGCTCCCCACA
TGCTACGGCGGGCATGGTGAATGTGGTTAACAGGAAGTGTGCCAACGAGA
GCTGCTCCAAGATCCCAACGTATGGCGTATCGTGTGGCCGGAAAGCGGAA
TTCTGCTCACAACATGCTACTGCTGGCATGGTTGATGTGGTCAATAGGAA
GTGCGCCAACAAGAGCCGCTTCAAGCAGGCGTTGTACCGTATATCGAGCA
ACAGAAAAGCGGTGTTTTGCTCCCAACATGCTACGGCGGGAATGACAAAT
GTAAAAAACAACAAGGGTCGCACGAAGAGGCCATCACATGGCTTAGCCGG
CAGCAGGACGGTGGAGTTGTCTCCTCAACACGCCAGGGAGGGTATGATGG
AAGTAGCGAACCAGAACTGTGACAATGAGGGCTACTCTGATGGTAGTAGG
CACCGTGTGCCTGTTCATGACCGAGATTCGTGCCCCCCGCATACCGTAGA
CCCAACGGCCAACAACGCGTCCAACGCATCAGGGCTTGCCCAAGAGAGGG
ATGATTACAGGGGCGGCCTGATTGATAGTGGGATCGGTAGCGTTTTAGAT
AATGGACGGGGGGGGAAACGAAGCTATCCCGACGGCAGCGGTTCGGGTTC
AAGCGGCGGTGTTGTTTCTGACCGCCGTGTGTGTGCCAGTATCAGGCAGG
GCGATATGATGCAGTCGCCGGTCTTAGGAAAAGCTGTCGTGGTGTTTCAA
GAGGTAAATGCACGCATGAAGGTAGAGTTAGTAGACTCTCCTTCCATCGG
TGCTGACGGTGGGGCGAGAGGGCGTAGTGAACTCGTCGTGCCCTGGATTG
ATTGGAGCAGCGTTGGTTGCAGTGCTGGCGACCGGGAAAGTGCGGAGCGG
CTAGGCAGTGGTACTACTACAACACCAGTGGTATCAGCACACCCTACGGC
AATGGGTCGAGTGGTGTCTCGAGAGGCCGAGGCAGAGGCCAACGTAAAAT
TGGAATTAGGAGTCTGCTCTCCCCACCCATAA
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