mRNA_H-paniculata_contig306.8289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig306.8289.1
Unique NamemRNA_H-paniculata_contig306.8289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig306.8289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig306contigH-paniculata_contig306:13342..13886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig306.8289.1prot_H-paniculata_contig306.8289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig306 13445..13768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.1337223-UTR-H-paniculata_contig306:13341..134441622929940.1337223-UTR-H-paniculata_contig306:13341..13444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig306 13342..13444 +
1691481078.7413688-UTR-H-paniculata_contig306:13341..134441691481078.7413688-UTR-H-paniculata_contig306:13341..13444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig306 13342..13444 +
1622929940.1627164-UTR-H-paniculata_contig306:13768..138861622929940.1627164-UTR-H-paniculata_contig306:13768..13886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig306 13769..13886 +
1691481078.7719362-UTR-H-paniculata_contig306:13768..138861691481078.7719362-UTR-H-paniculata_contig306:13768..13886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig306 13769..13886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.1500146-CDS-H-paniculata_contig306:13444..137681622929940.1500146-CDS-H-paniculata_contig306:13444..13768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig306 13445..13768 +
1691481078.7580733-CDS-H-paniculata_contig306:13444..137681691481078.7580733-CDS-H-paniculata_contig306:13444..13768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig306 13445..13768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig306.8289.1

>prot_H-paniculata_contig306.8289.1 ID=prot_H-paniculata_contig306.8289.1|Name=mRNA_H-paniculata_contig306.8289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MCFDVDIVAGQCTFVPSSGDSQLDSTTTISRMHGVQLVFCLYYCITIFIY
AVILRRRPNNEERKRTWRHQPSPESSFAGNSRCVYAVLSRVMALTDTAAV
AGSLPQR*
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mRNA from alignment at H-paniculata_contig306:13342..13886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig306.8289.1 ID=mRNA_H-paniculata_contig306.8289.1|Name=mRNA_H-paniculata_contig306.8289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=545bp|location=Sequence derived from alignment at H-paniculata_contig306:13342..13886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATCTAATCATGCAACGCTAGAAGCGCCAGGGGTCAAAGCCCACCATT
TTCATGTCAACCATTACATATCCACGGCTTGTGTGCTCCAGCTGTGTGAC
ACCATGTGCTTTGATGTAGATATTGTAGCTGGACAATGCACGTTCGTTCC
ATCGAGCGGTGACAGCCAATTGGACAGTACCACCACAATCAGTAGGATGC
ACGGAGTGCAGTTGGTATTCTGTCTGTACTACTGTATAACCATTTTTATC
TACGCGGTGATACTGCGGCGAAGACCAAACAACGAGGAGAGAAAGAGAAC
GTGGAGGCACCAGCCATCCCCCGAGAGTTCTTTTGCGGGCAATAGTCGCT
GCGTATATGCCGTCCTCTCACGAGTGATGGCACTCACCGACACAGCAGCA
GTAGCAGGTAGCCTACCACAGCGGTAGTGGGAATATGACACAAGGGATAA
TAAGGTCAAAACACAAACGATAACTCGGCGTTGGTCATGCTGAAAACAAA
TGCTTCTGTTGACATTTTCTTCTCTCATGAGACAGGAGTGAGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig306:13342..13886+

>mRNA_H-paniculata_contig306.8289.1 ID=mRNA_H-paniculata_contig306.8289.1|Name=mRNA_H-paniculata_contig306.8289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig306:13342..13886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTTTGATGTAGATATTGTAGCTGGACAATGCACGTTCGTTCCATC
GAGCGGTGACAGCCAATTGGACAGTACCACCACAATCAGTAGGATGCACG
GAGTGCAGTTGGTATTCTGTCTGTACTACTGTATAACCATTTTTATCTAC
GCGGTGATACTGCGGCGAAGACCAAACAACGAGGAGAGAAAGAGAACGTG
GAGGCACCAGCCATCCCCCGAGAGTTCTTTTGCGGGCAATAGTCGCTGCG
TATATGCCGTCCTCTCACGAGTGATGGCACTCACCGACACAGCAGCAGTA
GCAGGTAGCCTACCACAGCGGTAGATGTGCTTTGATGTAGATATTGTAGC
TGGACAATGCACGTTCGTTCCATCGAGCGGTGACAGCCAATTGGACAGTA
CCACCACAATCAGTAGGATGCACGGAGTGCAGTTGGTATTCTGTCTGTAC
TACTGTATAACCATTTTTATCTACGCGGTGATACTGCGGCGAAGACCAAA
CAACGAGGAGAGAAAGAGAACGTGGAGGCACCAGCCATCCCCCGAGAGTT
CTTTTGCGGGCAATAGTCGCTGCGTATATGCCGTCCTCTCACGAGTGATG
GCACTCACCGACACAGCAGCAGTAGCAGGTAGCCTACCACAGCGGTAG
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