mRNA_H-paniculata_contig30579.8282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30579.8282.1
Unique NamemRNA_H-paniculata_contig30579.8282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30579.8282.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-12
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    4 STDARLNKLFQSVKDNLHPRGTAAIMVPHPWHLQAGRMYSALTHASVGLHVEDHPLLLQYKGMRAGRTSRNVVNHL 231
            +T+  L ++  +V+  +HP GT A++VPHPW     R+  A+  A VGL VEDHPL+L Y     GR      NHL
Sbjct:  372 ATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHL 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30579.8282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.490e-1242.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30579contigH-paniculata_contig30579:543..1116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.0068803-CDS-H-paniculata_contig30579:542..6631622929939.0068803-CDS-H-paniculata_contig30579:542..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30579 543..663 +
1691481078.3572986-CDS-H-paniculata_contig30579:542..6631691481078.3572986-CDS-H-paniculata_contig30579:542..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30579 543..663 +
1622929939.0201728-CDS-H-paniculata_contig30579:1006..11161622929939.0201728-CDS-H-paniculata_contig30579:1006..1116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30579 1007..1116 +
1691481078.3665624-CDS-H-paniculata_contig30579:1006..11161691481078.3665624-CDS-H-paniculata_contig30579:1006..1116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30579 1007..1116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30579.8282.1prot_H-paniculata_contig30579.8282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30579 543..1116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30579.8282.1

>prot_H-paniculata_contig30579.8282.1 ID=prot_H-paniculata_contig30579.8282.1|Name=mRNA_H-paniculata_contig30579.8282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
TSTDARLNKLFQSVKDNLHPRGTAAIMVPHPWHLQAGRMYSALTHASVGL
HVEDHPLLLQYKGMRAGRTSRNVVNHL
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mRNA from alignment at H-paniculata_contig30579:543..1116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30579.8282.1 ID=mRNA_H-paniculata_contig30579.8282.1|Name=mRNA_H-paniculata_contig30579.8282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=574bp|location=Sequence derived from alignment at H-paniculata_contig30579:543..1116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCAACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAA
CCTGCACCCCCGTGGGACTGCTGCAATCATGGTACCTCACCCTTGGCATC
TGCAAGCTGGACGCATGTACAGTGAGTATTTTGTCTTTGCTGTTTGTGCA
ACTTTATAAAAAATACGCCATTGCTGCAACATGGAAGCCCATCGACCGCT
TCAGCCCACTATACCCAATGGTTTATGGGAGCAGAAAGTAGCGTGTACAC
GGCATAATAGAGTGTTCAACATGATTGCATCAAGGTGTAATGTGAACGTG
CGATTGGGGTATCACTGGACGTCCATTCTACGTTTTTTCACATGTTGCAC
GATAAACTCCGCCTGTTGAGGCATATGAGTGACCACGGAGGTATTGGAGC
ACACACATATCGGGTGTATTCCAAACATCAACGCATTCCGTGGACTTTCT
TACTGTGTTTGCAGGTGCTCTGACCCATGCATCGGTAGGGTTGCACGTTG
AGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACA
TCGCGGAATGTTGTCAATCATCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig30579:543..1116+

>mRNA_H-paniculata_contig30579.8282.1 ID=mRNA_H-paniculata_contig30579.8282.1|Name=mRNA_H-paniculata_contig30579.8282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig30579:543..1116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCAACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAA
CCTGCACCCCCGTGGGACTGCTGCAATCATGGTACCTCACCCTTGGCATC
TGCAAGCTGGACGCATGTACAACATCAACCGACGCCCGACTGAACAAGCT
ATTCCAATCCGTGAAAGACAACCTGCACCCCCGTGGGACTGCTGCAATCA
TGGTACCTCACCCTTGGCATCTGCAAGCTGGACGCATGTACAGTGCTCTG
ACCCATGCATCGGTAGGGTTGCACGTTGAGGATCACCCACTTCTCCTCCA
GTACAAGGGTATGAGGGCCGGGCGCACATCGCGGAATGTTGTCAATCATC
TAGTGCTCTGACCCATGCATCGGTAGGGTTGCACGTTGAGGATCACCCAC
TTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACATCGCGGAATGTT
GTCAATCATCTA
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