mRNA_H-paniculata_contig30569.8281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30569.8281.1
Unique NamemRNA_H-paniculata_contig30569.8281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.150e-22
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  139 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 229
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5K242_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K242_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.650e-21
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A     L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ + R  ++ L
Sbjct:   13 VVQTDCSNAFNTGKRTAIMAQAAKSVLDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLRLRAKYDHL 103
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.650e-21
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNL 228
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.750e-21
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHL 236
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 144
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 623
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5JEJ4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.070e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:   13 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 103
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.070e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 618
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.080e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + A   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 597
[Close]
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.710e-20
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDTGERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL 273
            ++  DC+NAFN+ KR AI+ + +   P L+ ++A+CY E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R  ++ L
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHL 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30569.8281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE8.150e-2245.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K242_9PHAE4.650e-2142.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LL14_9PHAE5.650e-2145.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLG6_9PHAE5.750e-2145.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.060e-2045.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE1.060e-2045.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JEJ4_9PHAE1.070e-2045.05DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JI32_9PHAE1.070e-2045.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.080e-2045.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.710e-2043.96Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30569contigH-paniculata_contig30569:316..588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.8616257-CDS-H-paniculata_contig30569:315..5881622929938.8616257-CDS-H-paniculata_contig30569:315..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30569 316..588 +
1691481078.3440456-CDS-H-paniculata_contig30569:315..5881691481078.3440456-CDS-H-paniculata_contig30569:315..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30569 316..588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30569.8281.1prot_H-paniculata_contig30569.8281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30569 316..588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30569.8281.1

>prot_H-paniculata_contig30569.8281.1 ID=prot_H-paniculata_contig30569.8281.1|Name=mRNA_H-paniculata_contig30569.8281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
LIALDCTNAFNSVKRAAILEEVAFRTPGLIPFVAKCYGEKPADIIFHIDT
GERRIISSNTGIHQGDGLGPALFCMPVGPILHKCREHFEAL
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mRNA from alignment at H-paniculata_contig30569:316..588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30569.8281.1 ID=mRNA_H-paniculata_contig30569.8281.1|Name=mRNA_H-paniculata_contig30569.8281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig30569:316..588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACCAATGCCTTCAACTCCGTCAAGCGGGCGGC
GATCTTGGAAGAAGTGGCATTCCGCACCCCAGGACTGATACCTTTCGTTG
CCAAATGCTACGGGGAGAAGCCGGCAGATATAATTTTCCATATTGACACC
GGCGAACGCAGGATAATCTCCTCGAACACGGGAATCCACCAGGGCGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTGCACAAGT
GCCGAGAACATTTCGAGGCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig30569:316..588+

>mRNA_H-paniculata_contig30569.8281.1 ID=mRNA_H-paniculata_contig30569.8281.1|Name=mRNA_H-paniculata_contig30569.8281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig30569:316..588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACCAATGCCTTCAACTCCGTCAAGCGGGCGGC
GATCTTGGAAGAAGTGGCATTCCGCACCCCAGGACTGATACCTTTCGTTG
CCAAATGCTACGGGGAGAAGCCGGCAGATATAATTTTCCATATTGACACC
GGCGAACGCAGGATAATCTCCTCGAACACGGGAATCCACCAGGGCGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTGCACAAGT
GCCGAGAACATTTCGAGGCTCTGCTTATCGCCCTCGACTGTACCAATGCC
TTCAACTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCATTCCGCAC
CCCAGGACTGATACCTTTCGTTGCCAAATGCTACGGGGAGAAGCCGGCAG
ATATAATTTTCCATATTGACACCGGCGAACGCAGGATAATCTCCTCGAAC
ACGGGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCTTCTGCATGCC
CGTGGGACCGATCTTGCACAAGTGCCGAGAACATTTCGAGGCTCTG
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