mRNA_H-paniculata_contig30567.8280.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30567.8280.1
Unique NamemRNA_H-paniculata_contig30567.8280.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: D8LLL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.030e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    4 QFSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            +FS ASPD+DEKAIRDPD   MC+ IARAK+ AL +R+D P +LITADQV
Sbjct:   57 EFSTASPDVDEKAIRDPDPRKMCAEIARAKARALAERLDKPAVLITADQV 106          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: UPI000644A3C4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A3C4)

HSP 1 Score: 62.4 bits (150), Expect = 1.780e-10
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 FSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            F+  SPDIDEKAIRDPD   +  MI+ AK+DALL ++  P ILI +DQV
Sbjct:   36 FTTMSPDIDEKAIRDPDARKLTMMISNAKADALLSKVKEPAILICSDQV 84          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: D3BGQ7_POLPP (Maf family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BGQ7_POLPP)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 RQFSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            + F++ SPDIDEKAIRD D   +  MI +AK+DALL ++  P ILI +DQV
Sbjct:   26 KDFTVMSPDIDEKAIRDTDARKLTMMITQAKTDALLDKVLEPSILICSDQV 76          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A3D1CQH5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Uhrbacteria bacterium TaxID=2053634 RepID=A0A3D1CQH5_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.350e-6
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   19 SPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            SP IDEKAIR  D   +   +A+AK++A++ +ID P ILITADQV
Sbjct:   28 SPGIDEKAIRCDDPEKLVLALAKAKAEAIVDKIDGPAILITADQV 72          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A554KD27_9BACT (Uncharacterized protein n=1 Tax=Parcubacteria group bacterium Gr01-1014_33 TaxID=2017184 RepID=A0A554KD27_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.460e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    4 QFSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            +F +    IDEKAIR  +   +  M+A AK++ALL +I  P ILIT+DQV
Sbjct:    4 EFEVMPSGIDEKAIRSENPRKLVLMLAYAKAEALLPKIQEPAILITSDQV 53          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A2D6MKR0_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2D6MKR0_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 6.510e-6
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 FSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            F +  PDIDEKAIR+PD   +   +A AK+D +++++    I+IT D V
Sbjct:   23 FEVVVPDIDEKAIRNPDPKKLVIKVANAKADDIIKKVSKEAIVITGDSV 71          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A1F6Y7F0_9BACT (Nucleoside triphosphate pyrophosphatase n=2 Tax=Candidatus Nomurabacteria TaxID=1752729 RepID=A0A1F6Y7F0_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 8.980e-6
Identity = 20/49 (40.82%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    7 FSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            F + SPD++EK I+  D +    ++ARAK+DAL+ +++ P +LIT+D +
Sbjct:   23 FDVLSPDVNEKLIQINDPYERPLIVARAKTDALISKVNEPALLITSDVI 71          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A0G1T8D1_9BACT (Nucleoside triphosphate pyrophosphatase n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A0G1T8D1_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 9.490e-6
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    7 FSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQV 153
            F +   +IDEKAIR  D + +   ++RAK+ ALL +I  P ILITADQV
Sbjct:   23 FDVMVSNIDEKAIRHEDFYELPLRLSRAKAAALLTKIKEPAILITADQV 71          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A8J4AT59_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AT59_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    7 FSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRI-----DPPGILITADQV 153
            + + + DI+EKAIRDP    + S++ARAK DA++Q++     +  G LIT DQV
Sbjct:   55 YEVKTADINEKAIRDPSPDKLVSLLARAKKDAIIQKMKDEGEEMRGFLITCDQV 108          
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Match: A0A3R7LEV9_9TRYP (Septum formation protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7LEV9_9TRYP)

HSP 1 Score: 48.5 bits (114), Expect = 2.760e-5
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    1 RQFSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPP------GILITADQV 153
            R+F    PDIDEKA R PD + +  +IARAK  A+L+++         G+++T DQV
Sbjct:   34 REFIALPPDIDEKAWRSPDPFELTKLIARAKMQAVLEKLKDAHPHLKHGVVVTFDQV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30567.8280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LLL5_ECTSI1.030e-1468.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000644A3C41.780e-1059.18hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BGQ7_POLPP2.380e-954.90Maf family protein n=1 Tax=Polysphondylium pallidu... [more]
A0A3D1CQH5_9BACT2.350e-655.56Uncharacterized protein n=1 Tax=Candidatus Uhrbact... [more]
A0A554KD27_9BACT6.460e-648.00Uncharacterized protein n=1 Tax=Parcubacteria grou... [more]
A0A2D6MKR0_9BACT6.510e-642.86Nucleoside triphosphate pyrophosphatase n=1 Tax=ba... [more]
A0A1F6Y7F0_9BACT8.980e-640.82Nucleoside triphosphate pyrophosphatase n=2 Tax=Ca... [more]
A0A0G1T8D1_9BACT9.490e-651.02Nucleoside triphosphate pyrophosphatase n=2 Tax=Pa... [more]
A0A8J4AT59_9CHLO1.640e-544.44Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A3R7LEV9_9TRYP2.760e-542.11Septum formation protein n=1 Tax=Trypanosoma conor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30567contigH-paniculata_contig30567:2367..2522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D8LLL5
KEGG koko:K06287
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.8177884-CDS-H-paniculata_contig30567:2366..25221622929938.8177884-CDS-H-paniculata_contig30567:2366..2522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30567 2367..2522 +
1691481078.326984-CDS-H-paniculata_contig30567:2366..25221691481078.326984-CDS-H-paniculata_contig30567:2366..2522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30567 2367..2522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30567.8280.1prot_H-paniculata_contig30567.8280.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30567 2367..2522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30567.8280.1

>prot_H-paniculata_contig30567.8280.1 ID=prot_H-paniculata_contig30567.8280.1|Name=mRNA_H-paniculata_contig30567.8280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
RQFSIASPDIDEKAIRDPDTWNMCSMIARAKSDALLQRIDPPGILITADQ
V*
back to top

mRNA from alignment at H-paniculata_contig30567:2367..2522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30567.8280.1 ID=mRNA_H-paniculata_contig30567.8280.1|Name=mRNA_H-paniculata_contig30567.8280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig30567:2367..2522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGTTTTCGATAGCCTCTCCCGATATCGACGAAAAGGCGATCCGAGA CCCGGACACATGGAACATGTGCTCCATGATTGCTAGGGCGAAGTCGGACG CGCTGCTTCAGCGCATCGATCCACCCGGGATTTTGATAACCGCAGACCAG GTTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30567:2367..2522+

>mRNA_H-paniculata_contig30567.8280.1 ID=mRNA_H-paniculata_contig30567.8280.1|Name=mRNA_H-paniculata_contig30567.8280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig30567:2367..2522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGTTTTCGATAGCCTCTCCCGATATCGACGAAAAGGCGATCCGAGA
CCCGGACACATGGAACATGTGCTCCATGATTGCTAGGGCGAAGTCGGACG
CGCTGCTTCAGCGCATCGATCCACCCGGGATTTTGATAACCGCAGACCAG
GTTTGACGACAGTTTTCGATAGCCTCTCCCGATATCGACGAAAAGGCGAT
CCGAGACCCGGACACATGGAACATGTGCTCCATGATTGCTAGGGCGAAGT
CGGACGCGCTGCTTCAGCGCATCGATCCACCCGGGATTTTGATAACCGCA
GACCAGGTTTGA
back to top