mRNA_H-paniculata_contig3056.8279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3056.8279.1
Unique NamemRNA_H-paniculata_contig3056.8279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: D7FMS4_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS4_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 1.820e-153
Identity = 326/723 (45.09%), Postives = 403/723 (55.74%), Query Frame = 3
Query:  570 WIDELRESLRGRRLFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHTGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIACGLVPRDEAMAVPNSADYGCCVLSSSHASEATT------PKHNKSSPAELNSISYRGSGGDIASTNNSXXXXXXXXXXXXXXXXXXGIPPGQSAVLPLKDTEEAHGQRPRRRRVHVSRPGSGSESRGSTDEEHDHGNGYHFVEEEVERGDQELPRDVRRGVIAMGAGAEDEALMTNMGTSNSRGPDDRNGGAGGGDTGRRRGRERSPSFSQMGASSALGRSGEERLGGGEEVDG-QGEEGKHPGPGIVNLYEEQEDGED------EQEKSSYFYLGSINAGSKGRPLPLPRRPPVVVDHDRIVVQRRRDCGSDNEHVSFPTHATTTTTTHVNGTTRSHHPNLVGDLQQVLDRPIFALVVFGAAANAAVTAGMSTFGTGFITALELLHTETAAAATFGVIICAAGLVGTPAGGALIDAADPEGRLVDEKKLEVVMRQAMWLVCGATVVLVVATAQSSLLPFLVLFFVGAVLLFSYTPHINLAVMLAAPAHLRPLAIAINSVMLHVLGDVPSPTVVGAIKDALAPHCVASSS 2699
            W+ E R+SLRGRRLFTL A+VNLVNY+DRGV+PGGSEEFN FI + LHT RPDVFLG+LQS FILGFS +C  F  +A   SPFSLM+AGLG+WC + V AG+A+PL SY  LL ARLLSGVGEASFVTVVPPLIT+TAPPGERG+WLA+FYTA PVGAG+GYVYGS L++S LGW WAFY EA  MAPLA+AC LVPRD AMAV N++DYG    S++  +  TT      PK  +SS    +    +G G    +  +S                        SAV     T    G   R                                     R D+E  R +     A G             +S+S G  +   G   G        ER  ++ +   ++ + R G +R    EEVDG  G                  +GE       E    +   LGS+N+G    P   P    +                      +    A                   + D+ +V DRP+F LVV G+AA AAV+ GMSTF T  +T+LE L +E+AAAATFG +ICAAGLVGTPAGGALIDAADPEGRL DE+KL +V+ QA  L+C ATV+LV +T QSSL+PFL        LLF+   H NLAVML++P HLRPLAIA+NS+++H LGDVPSPT++G  KDALAPHCVA  +
Sbjct:    7 WVQEARDSLRGRRLFTLLAVVNLVNYLDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGFILGFSAACFVFPSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFFMAPLAMACSLVPRDRAMAVSNASDYGAPPGSTATPTTDTTGNLSGSPKDGESSGMAESPKVEQGYGSPARAEGSS------------------------SAVSSSVATPSPEGDLRR-------------------------------------RPDREKKRLLGVCDGAGGGXXXXXXXXXXXXSSSSWGLLEHEPGGWAG--------ERDKTWVEEEDTAEMSRGGSQRHYP-EEVDGISGXXXXXXXXXXXXXXXXXXEGEGGASIGGEGHDPTVRLLGSLNSGQS--PCCSPGEDSIGTTAXXXXXXXXXXXXXXXXXXTSSVFA-------------------LQDVLEVADRPVFCLVVLGSAATAAVSVGMSTFCTSIVTSLEFLPSESAAAATFGCVICAAGLVGTPAGGALIDAADPEGRLGDERKLAMVLSQATALMCVATVLLVASTVQSSLIPFLFXXXXXXALLFATASHSNLAVMLSSPRHLRPLAIAVNSIVMHALGDVPSPTLIGWAKDALAPHCVAGEA 638          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A6H5JJH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH2_9PHAE)

HSP 1 Score: 459 bits (1181), Expect = 1.140e-143
Identity = 314/712 (44.10%), Postives = 386/712 (54.21%), Query Frame = 3
Query:  570 WIDELRESLRGRRLFTLFALVNLVNYVDRG-VVPGGSEEFNVFISRELHTGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIACGLVPRDEAMAVPNSADYGCCVLSSSHASEATTPKHNKSSPAELNSISYRGSGGDIASTNNSXXXXXXXXXXXXXXXXXXGIPPGQSAVLPLKDTEEAHGQRPRRRRVHVSRPGSGSESRGSTDEEHDHGNGYHFVEEEVERGDQELPRDVRRGVIAMGAGAEDEALMTNMGTSNSRGPDDRNGGAGGGDTGRRRGRERSPSFSQMGASSALGRSGEERLGGGEEVDGQGEEGKHPGPGI-VNLYEEQEDGEDEQEKSSYFYLGSINAGSKGRPLPLPRRPPVVVDHDRIVVQRRRDCGSDNEHVSFPTHATTTTTTHVNGTTRSHHPNLVGDLQQVLDRPIFALVVFGAAANAAVTAGMSTFGTGFITALELLHTETAAAATFGVIICAAGLVGTPAGGALIDAADPEGRLVDEKKLEVVMRQAMWLVCGATVVLVVATAQSSLLPFLVLFFVGAVLLFSYTPHINLAVMLAAPAHLRPLAIAINSVMLHVLGDVPSPTVVGAIKDALAPHCVASSS 2699
            W+ E R+ LRGRRLFTL A+VNLVNY+DRG V+PGGSEEFN FI + LHT RPDVFLG+LQS +ILGFS +C  F  +A   SPF+LM+AGLG+WC + V AG+A+PL SY  LL ARLLSGVGEASFVTVVPPLIT+TAPPGERG+WLA+FYTA PVGAG+GYVYGS L++S LGW WAFYLEA  MAPLA+AC LVPRD AMAV N+ D+G                 +  SPA   + +     G     ++S                  G     S+ + +   E    +RP R +  +     G++           G                          +     E E                      GG  G     ER  S  +  A   L R G +R    E VDG              ++  E  D       S+   LGS+N+G    P   P                                 +                  + D+ +V DRP+F LVV G+AA AAV+ GMSTF T  +T+LE L +E+A AATFG +ICAAGLVGTPAGGALIDAADPEGRL DEKKL +V+ QA  L+C ATV+LV +T QSSL+PFL        LLF+   H NLAVML++P HLRPLAIA NS+ +H LGDVPSPT++G  KDALAPHCVA  +
Sbjct:   60 WVQEARDYLRGRRLFTLLAVVNLVNYLDRGKVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGYILGFSAACFVFTSLARRRSPFNLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSGLGWPWAFYLEAFFMAPLAMACSLVPRDRAMAVSNAFDHGA----------------SPGSPATPTTDATGNLSGSPKDGDSSGMAESPTVEQGYGSPARVGSSSAVSSSVAMPCPEGNLRRRPDREKKRLLGVRDGAKG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXSSWGLLEHEP---------------------GGWAG-----ERDKSCEEDTAE--LARGGSQRHNPAE-VDGXXXXXXXXXXXXRASIVAEGHD-------STVPLLGSLNSGQS--PCCSPGEDSFGTTXXXXXXXXXXXXXXXXXXXXXXXXGSILA---------------LQDVVEVADRPVFCLVVLGSAATAAVSVGMSTFCTSIVTSLEFLPSESATAATFGCVICAAGLVGTPAGGALIDAADPEGRLGDEKKLAMVLSQATALMCVATVLLVASTVQSSLIPFLFXXXXXXALLFATASHSNLAVMLSSPRHLRPLAIAANSIFMHALGDVPSPTLIGWAKDALAPHCVAGEA 692          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A835YQ86_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ86_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.970e-48
Identity = 94/188 (50.00%), Postives = 132/188 (70.21%), Query Frame = 3
Query:  585 RESLRGRRLFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHTGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIA 1148
            R +LRG  +F L    N++ ++DRG++PG S+E N FI   L+T  PDVFLG+LQSAFILGF+ S L FA + ++++ F L+  GL V+ A+ ++ G A  + S++FL  ARLL+GVGEASF  VVPP+I + A P E G WLA+++TA+PVG  +GY+YGS+L+ S L W  A++LE  VM PL  A
Sbjct:   40 RCALRGSNVFLLLTATNMMIFLDRGILPGCSQEINEFIEDSLNTSTPDVFLGLLQSAFILGFAASTLVFAHLTHYYNAFKLIGVGLIVFAAALLLTGAAEYIGSFWFLFCARLLTGVGEASFTCVVPPIILDNAAPHEGGKWLALYFTAIPVGTALGYIYGSLLAHSRLSWSGAYWLEVPVMLPLIAA 227          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A418AU96_9STRA (MFS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AU96_9STRA)

HSP 1 Score: 187 bits (474), Expect = 7.930e-46
Identity = 84/189 (44.44%), Postives = 127/189 (67.20%), Query Frame = 3
Query:  609 LFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHT--GRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIACGLVPRD 1169
            +F LF L+NL+N+VDRG++PG   +F  FI   LH   G    +LG+L S+FI  ++   L F  ++ F  PF L++ GL VWC + V+ G A+P  S++ LLF R++SG+GE+SF  + PP I + APP +R +WL +F++ + VG  VGY YG+++++S+ GW WAF+LEA++MAPL +AC     D
Sbjct:  217 IFGLFCLINLLNFVDRGIIPGAPTQFQFFIKETLHVAVGDESKYLGLLASSFIASYAGFILLFGYLSIFMKPFHLVAMGLFVWCLAVVVCGSAKPANSFYVLLFGRIISGIGESSFQCIAPPFIDDHAPPAQRTLWLGVFFSCISVGTAVGYEYGALMANSAWGWGWAFHLEAIMMAPLVLACAFCIPD 405          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A4D9D5W1_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5W1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.430e-45
Identity = 85/199 (42.71%), Postives = 131/199 (65.83%), Query Frame = 3
Query:  570 WIDELRESLRGRRLFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHTGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGV-WLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIACGLVP 1163
            W +EL         FT    +NL+NY+DRG++PG +EEF+ F++  L T  PD+F+G+LQSAFI+GFSL+ + F  + ++ +PF ++  GL +W  +T ++GLA  + SY+ L  AR+LSGVGEASF  V PP I +    G+ G  W+A+FYTA+P+G  +GY +G++ + S   W   F++E+ +M P A+ C L+P
Sbjct:   14 WTNELA--------FTFLFFLNLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVGEASFQCVAPPFILDLG--GDSGGRWVAVFYTAIPLGTAIGYPWGALFAGSPWTWAGGFWIESFLMLPFAVTCFLLP 202          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A1V9ZLQ6_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLQ6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.680e-45
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  609 LFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHT--GRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAIAC 1151
            LF LF  +NL+NYVDRG++PG   +F  FI R LH    +  V+LG+L S+FI  ++L  + F  ++ F  PF L+  GL VWC + ++ GLA+P +S+  LL  R+LSG+GE+SF  + PP I + AP   R +W+ +F+T    G  +GY YG+VL++SS GW WAFY+ A+ M PLA  C
Sbjct:    7 LFLLFCGINLLNYVDRGIIPGAPTQFQYFIERTLHVDVSQEGVYLGLLASSFIASYALFIMLFGYLSIFVKPFRLIGIGLLVWCVAMLLCGLAKPAQSFGLLLAGRILSGIGESSFQCIAPPFIDDYAPASTRTLWMGVFFTLTSAGTALGYAYGAVLANSSWGWDWAFYIVAIAMFPLAYIC 189          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: F0YK29_AURAN (MFS domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK29_AURAN)

HSP 1 Score: 169 bits (428), Expect = 1.230e-43
Identity = 97/207 (46.86%), Postives = 127/207 (61.35%), Query Frame = 3
Query:  603 RRLFTLFALVNLVNYVDRGVVPGGSEEFNVFI--SRELH-TGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQW--AFYLEALVMAPLAIACGLVPRDEAMAVPNSADYGC 1208
            + +  L  + NL+NY+DRG++PG + EF  F+  SREL   G      G LQSAFI+GFSL+CL    + +  SPF +   GL VW  + V+AGLAR  +SY  LL AR+LSGVGEA FVTV  P I + A     G+WL +FY A+P G  +GY YG+ ++S    W W  AFY+EAL M PLA AC L+  D+   V   A+ GC
Sbjct:   11 KAIMVLLIVTNLINYLDRGIIPGANGEFTDFVAKSRELGGKGGASAAFGALQSAFIVGFSLTCLGVGHLIHTRSPFGMCGRGLIVWIFAAVVAGLARSTQSYSLLLLARMLSGVGEAGFVTVGGPFIQD-AGGTAMGLWLGVFYAAIPTGTALGYGYGAFIASR---WNWSVAFYIEALAMVPLA-ACFLLSADDGSRVVAKAEPGC 212          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: T0SI99_SAPDV (MFS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SI99_SAPDV)

HSP 1 Score: 176 bits (446), Expect = 3.100e-43
Identity = 80/181 (44.20%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  609 LFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELH--TGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAI 1145
            +F LF L+NL+NYVDRG++PG   +F  FI   ++   G+   +LG+L S+FI  ++   L F  ++ F  PF L+  GL VWC + ++ G A+   S++ LL  R+LSG+GE+SF  + PP I + APP  R +WL +F+  + VG  VGY YG++ + S+LGW WAFY+EA +MAPLA+
Sbjct:   22 IFFLFCLINLLNYVDRGIIPGAPTQFQYFIKATMNITVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGVGLLVWCVAVLVCGAAKQTNSFYVLLAGRILSGIGESSFQCIAPPFIDDYAPPATRTLWLGVFFACISVGTAVGYEYGALFADSNLGWGWAFYVEAFLMAPLAL 202          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A1V9Z1C1_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1C1_9STRA)

HSP 1 Score: 175 bits (443), Expect = 6.410e-43
Identity = 80/181 (44.20%), Postives = 120/181 (66.30%), Query Frame = 3
Query:  609 LFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHT--GRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAI 1145
            +F LF L+NL+NYVDRG++PG   +F  FI   ++T  G+   +LG+L S+FI  ++   L F  ++ F  PF L+  GL VWC + ++ G AR   +++ LL  R+LSG+GE+SF  + PP I + APP  R +WL +F++ + VG  VGY YG++ + S+LGW WAF +EA +MAPLA+
Sbjct:   18 IFFLFCLINLLNYVDRGIIPGAPTQFQYFIKSTMNTTVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGVGLLVWCVAVLICGAARQAHNFYVLLAGRILSGIGESSFQCIAPPFIDDYAPPATRTLWLGVFFSCISVGTAVGYEYGALFADSALGWGWAFNVEAFLMAPLAL 198          
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Match: A0A1V9ZFY5_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFY5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 6.730e-43
Identity = 79/181 (43.65%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  609 LFTLFALVNLVNYVDRGVVPGGSEEFNVFISRELHT--GRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSAGLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETAPPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAPLAI 1145
            +F LF L+NL+NYVDRG++PG   +F  FI   ++T  G+   +LG+L S+FI  ++   L F  ++ F  PF L+  GL VWC + ++ G A+   S++ LL  R+LSG+GE+SF  + PP I + APP  R +WL +F+  + +G  VGY YG++ + S  GW WAF +EAL+MAPLA+
Sbjct:   16 IFVLFCLINLLNYVDRGIIPGAPTQFQFFIKATMNTSVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGIGLFVWCIAVLICGAAKHYNSFYVLLVGRILSGIGESSFQCIAPPFIDDYAPPATRTLWLGVFFACISIGTAVGYEYGALFAESDAGWSWAFNVEALLMAPLAL 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3056.8279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS4_ECTSI1.820e-15345.09MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJH2_9PHAE1.140e-14344.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQ86_9STRA2.970e-4850.00Major facilitator superfamily domain-containing pr... [more]
A0A418AU96_9STRA7.930e-4644.44MFS domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A4D9D5W1_9STRA4.430e-4542.71MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A1V9ZLQ6_9STRA5.680e-4545.36Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
F0YK29_AURAN1.230e-4346.86MFS domain-containing protein (Fragment) n=1 Tax=A... [more]
T0SI99_SAPDV3.100e-4344.20MFS domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9Z1C1_9STRA6.410e-4344.20Major Facilitator Superfamily (MFS) n=1 Tax=Achlya... [more]
A0A1V9ZFY5_9STRA6.730e-4343.65Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3056contigH-paniculata_contig3056:3993..16960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.7
Seed ortholog evalue1.4e-135
Seed eggNOG ortholog2880.D7FMS4
KEGG koko:K09008
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-21_000350.1
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons6
Model size2982
Cds size2595
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.713206-UTR-H-paniculata_contig3056:3992..43781622929938.713206-UTR-H-paniculata_contig3056:3992..4378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3056 3993..4378 +
1691481078.2503865-UTR-H-paniculata_contig3056:3992..43781691481078.2503865-UTR-H-paniculata_contig3056:3992..4378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3056 3993..4378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.7242866-CDS-H-paniculata_contig3056:4378..46511622929938.7242866-CDS-H-paniculata_contig3056:4378..4651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 4379..4651 +
1691481078.271393-CDS-H-paniculata_contig3056:4378..46511691481078.271393-CDS-H-paniculata_contig3056:4378..4651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 4379..4651 +
1622929938.7347827-CDS-H-paniculata_contig3056:8920..90261622929938.7347827-CDS-H-paniculata_contig3056:8920..9026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 8921..9026 +
1691481078.2805588-CDS-H-paniculata_contig3056:8920..90261691481078.2805588-CDS-H-paniculata_contig3056:8920..9026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 8921..9026 +
1622929938.7468421-CDS-H-paniculata_contig3056:12183..123371622929938.7468421-CDS-H-paniculata_contig3056:12183..12337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 12184..12337 +
1691481078.289389-CDS-H-paniculata_contig3056:12183..123371691481078.289389-CDS-H-paniculata_contig3056:12183..12337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 12184..12337 +
1622929938.7623096-CDS-H-paniculata_contig3056:13300..134741622929938.7623096-CDS-H-paniculata_contig3056:13300..13474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 13301..13474 +
1691481078.2982051-CDS-H-paniculata_contig3056:13300..134741691481078.2982051-CDS-H-paniculata_contig3056:13300..13474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 13301..13474 +
1622929938.7726254-CDS-H-paniculata_contig3056:14720..160721622929938.7726254-CDS-H-paniculata_contig3056:14720..16072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 14721..16072 +
1691481078.307068-CDS-H-paniculata_contig3056:14720..160721691481078.307068-CDS-H-paniculata_contig3056:14720..16072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 14721..16072 +
1622929938.7835617-CDS-H-paniculata_contig3056:16424..169601622929938.7835617-CDS-H-paniculata_contig3056:16424..16960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 16425..16960 +
1691481078.316444-CDS-H-paniculata_contig3056:16424..169601691481078.316444-CDS-H-paniculata_contig3056:16424..16960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3056 16425..16960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3056.8279.1prot_H-paniculata_contig3056.8279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3056 4379..16960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3056.8279.1

>prot_H-paniculata_contig3056.8279.1 ID=prot_H-paniculata_contig3056.8279.1|Name=mRNA_H-paniculata_contig3056.8279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=865bp
MGYPATEDDRGAQLLLSANSNHFNCSGADPALDADDADGAIASVRRGGGV
RVRGCIRTSLRWIDELRESLRGRRLFTLFALVNLVNYVDRGVVPGGSEEF
NVFISRELHTGRPDVFLGVLQSAFILGFSLSCLFFARMANFHSPFSLMSA
GLGVWCASTVMAGLARPLESYFFLLFARLLSGVGEASFVTVVPPLITETA
PPGERGVWLAIFYTAMPVGAGVGYVYGSVLSSSSLGWQWAFYLEALVMAP
LAIACGLVPRDEAMAVPNSADYGCCVLSSSHASEATTPKHNKSSPAELNS
ISYRGSGGDIASTNNSTSNASSSSFSSLASSPPPGIPPGQSAVLPLKDTE
EAHGQRPRRRRVHVSRPGSGSESRGSTDEEHDHGNGYHFVEEEVERGDQE
LPRDVRRGVIAMGAGAEDEALMTNMGTSNSRGPDDRNGGAGGGDTGRRRG
RERSPSFSQMGASSALGRSGEERLGGGEEVDGQGEEGKHPGPGIVNLYEE
QEDGEDEQEKSSYFYLGSINAGSKGRPLPLPRRPPVVVDHDRIVVQRRRD
CGSDNEHVSFPTHATTTTTTHVNGTTRSHHPNLVGDLQQVLDRPIFALVV
FGAAANAAVTAGMSTFGTGFITALELLHTETAAAATFGVIICAAGLVGTP
AGGALIDAADPEGRLVDEKKLEVVMRQAMWLVCGATVVLVVATAQSSLLP
FLVLFFVGAVLLFSYTPHINLAVMLAAPAHLRPLAIAINSVMLHVLGDVP
SPTVVGAIKDALAPHCVASSSNHDNVVHDMIHNVTAAQEQHRHQYHYQPQ
DELQEPWPIGHDVQSSPDALLAGLSMAKASSARFVDGVVWTGLGEGLETV
ESPSDEAWGSGQGIG
back to top

mRNA from alignment at H-paniculata_contig3056:3993..16960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3056.8279.1 ID=mRNA_H-paniculata_contig3056.8279.1|Name=mRNA_H-paniculata_contig3056.8279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12968bp|location=Sequence derived from alignment at H-paniculata_contig3056:3993..16960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCAGGCTTCTCCTGCTGTAACTCGATCAGGTTAGGGGTTAGACGGC TCTACATCTGGATCTGCAGTAGCAGTACGTTTTTCCACGCTAGAACTTCC CTGTTTATCAGCGTTGAGGATCACAGTTCTGGGCATTCGTGCGCAACACT GCGCACTGTAATACTAATTTCTCCTCTCTGTTCTGCGCATCAAGAGCCCA TTTCGCCGACAGACACTACTGTATGGAATAGTATTACCTCAACGAAGCAA ACACTGCACAGTCACTGAAGGCCATTGTACCGTATCAGGATATAGCTGCA ACGACTCGCTTCTTACGGGTGTCAAGGGTGTAGAAATTATACTACCCTCC GCCCGGTGATTTGTCCACTTCTTCATCCTTCATTCGATGGGGTACCCTGC GACCGAGGATGATCGCGGTGCTCAACTGCTGTTATCAGCAAATTCGAATC ACTTCAACTGCAGCGGCGCGGACCCCGCCCTAGATGCAGATGATGCAGAT GGTGCCATAGCTAGCGTGAGGAGGGGCGGTGGCGTGAGGGTGAGGGGGTG CATAAGAACTTCGCTCAGGTGGATAGATGAGCTGCGGGAGTCTCTGCGGG GGCGTCGGCTGTTCACTCTGTTCGCGCTTGTCAACCTTGTCAACTACGTT GACAGAGGGGTAAGCTTTCCTGCAGTTATACAGAGTTGACACTCTGTTGT ACTAGTCAGGGTCACGCAAGAGTCAGCCTAGAGTCTGTCAAGTCAGTCAG TCAAACTGCAATAAGACAAGGGTGTAGAAGCTTTAGCTCAAGCTGCAGCG TTATAATGATAGAGCTATACACGTTTTTTGCATTATGTGTGGTGTGCTAC CAGACTCGGCGTGGTCTAAGCACGAATCATGGCACTTACGAGGGGCCCGG CTGTTTTAGCTATTTTTTCATTTCCTCTCGACATTTACTCAATAGTACCT CGTCTACCTTATAGTATGTATTGAACGACGGAATTTTGCACCGTGTTCAG GACCAGAACGGAGATACAACGAGGTGTAGCGTGCTCTCTAACTATACCCG TGGAAATTAATATGTACTGTGTACGATGTACGAAGTTCTTCCACCAACGC GACAACGCTCAAGAGCGACAGCCAAGGCCAAGTCATGTCGATTGAGATAA CGACATTGGATTGAGATTGACAGTAGGAGTTAGAAAATATGACATGTACA CCATACCTGCGGCAGGCTGATTTCATCGCTAAAAAACGTATGTGATTCCT AATTATTATTGCAGTATGATGAGGTGGTGGTGATCGTCGGTTGTGGGACA GAATGTGCTCAAGTAACTCCTGAGAACTGAATTTTCATGCGAGCGCAGCG AGCATGTGTTTGCCTAGCCGTGGTCATCCTCTGTCACTAGCTTCAAGAGC TCCCGGATCGTGCGACACAGTACAGTAGTACGTGTTTGTCACAGTACAGC AGTACATACATGAACACGTGGCGCCCTGTTGTGACAGGGTTAGGATCACC AACCGGTTTGGACATCTGTCCTTGAGTGCAGCGCAAGAAATATTGAGGCA CGTGTTCCACACGGCAAATATGTACTGCTTAGTAGCCCCTCCTACACTAA GTTGGATTTCGGTGATTCACGCCGGGCAGGCATAAGAAAAGAAAAGAGGG TGAGCCATTCATCCTGCTGGTGTTAGGGTCAGATCGCCACCGTTTTGACA GTATTGCATTGAGTGTAGCGTTCGAAATGTTGGAGCAACGGTGTGCGAAA GTGTAGCAAATAGACAAGAGACAGAATTTTTCGTTTCGGTCCCCCTCTTG CAAAATTCTGTACCTCTTTGATTGTCGTCATGATCCGGTACGAGAGATCA AAACTCTAGGGAAGGCATGAGGTTCCCCTCAATTATAGGATTAGTTATAT TGAACAGTGATTGGACTACAGCTGCAGAATCGCGATGCAACCAAAAATTG ACAAACCAACCCGAGGAAGCCTTAGGAACGCCAACATACCGCAGCATAGC GTACGGCTACCCCTATACTATCAACAAGACACCGCGCCCCCGAAAATCCA CTACCAGTAGTGTCGTGCGCCCGATGTTGGGCCGTTTGTGACTCCACGCC AAATGAAAAACGGCTTAAAATCGATCCGGCTTGAGATCCAGTCCATTACA TGTATACTAAAAGCCGAGTGTCTGGTAACACCTATGCCCTTCCAATAGAA CAGCCGAAAGAGAAAACGGCCGGAAACGTTTGGCCTAAAATCGGGTCCAC TACGTACCTTGAAAGGACCTGCAGTACAACACTGAGCCGCGTAAAGAACC GACAGTCATCCTTTGCGGGGAGTACCGCGAAAAAAACAAGCCGATCAGTG AGAGAGAGACAGCCACCATTCAATGACGCCGAGAAATTACTCCCGGCAAA GTAGAGGGCAGTGGCCAGGAAAATGTATACGGTGGTCCTTTTCGGTCATT TTAAGGCAGCGTGCAGGGCCACGACTGCTTTGCTCGCGTGTGCTCTGCCA ACGCAATAACGTCAGATGTACATTCTCCCAACGCACATTACACGAGGACC CACGAATTTAGGCTTCGATTAGGGTTAGGGTTGGCGTGAGAATTGGTCAA GTCTGGGGTTGTTGCGCGAGCTCTGCTGAAGCAGTTAGATTAGTAGAACC AGTTGGGTAGGTTGGCGTTTTGGTTCTCTCGATTGAATGCCAAATAGAAC TGCTCTGCAGGGGTGCTCTCGAAACACTAGTGTGAAATTCCGGGGTTGGC CAGGAAAAGGTACAGATTTGGCCGAAGTACGTGACATGACACCCGTAGCC AGAGAAAGGTGGGAAGTCCAACCTTATCGGAATCAAAAGGCCTGTATATA CCTTCATCTTGAGCCCTGGTGGCCAATCCAAGTTAGTTCAACAGGAAAAG GAGATTTTAAAGAGAGTTTCAAGATTTTTTAAGAGGCCGTTTTGGAGCAA CAGGCTTCTGTCGGACAACAATAGATGTCGAGAGAGGGCTGTAATTATCG TGGGTTGAACTATACCTAGATCTGTTTTACGCTGTAAATATTATCTGTAA GGCTGCTCTATATCCCCGTGATCGTGTTATAAGTCGTAAGGTGCCGTCTC CACCTGTTTTTACGGTAACAATTAGATGTGGATTAATCATAGGTAAAAAT TGATTAGATGTATTCAAGTTTTCCGTGAGCGAGTACACAGCGATCACCTC TAATTTCCGCGGGCAAAAGCTGATGGGATGGATGAATTAATGAATATTAT GGAGCTCCCGGACTGACTAACACCAGAGTGTGTGGAAGTCGTGAGGGCCA TGTACAGGGAAGATACCCCACAGCGACCCTTGGTGGTACGGTCAAAATTG CTGAAAAGTAAGCACCAAGCAAGTACCCTCTTTTGACATTTGGCCCAAAA AATATATATATCGCTGGAACTGCACTCGAGATCACTCAGTCAGCAAAAAA ATCACACTAAAAGAACACAGCATCCAACAAACAAGACACAGCAAGCGCCC GCGAAAATCGCAGCACTCCCCCCCAAAAGAGGCATATGTTTACCAAGCAT GTTTGCAGTCAATCGTGGCGGTCACGAAACAATTTCCTGGCCTGGACGGT TGGTTGACTGCAAAGCATGCTTGAGGATTGTGTTTCTATCCCGCGATTGT GCTCTTTGAAAGAGCTGCTGTATCCTTCGAGGGTACTGTGTATGACTATA ACTTATCCCCTTTCATGGTGTTTTTTTTCGTTGGTGGGAGTGCCTTGACT GCAGTTTCCTGCGATATGTTTCTTTTTTGCGGGGCGTTGTGCGTCTCCGT GGTGCCTCTTCGGTAGGGGGGGTCATCGATATCCGACGCGGCACCTCCGG TAATGGTTGTCTTTAGGTATTTGCTTGGCGCGTTGTCCTCTATCTCTTTT TATTACCACAAAACTGGGGTATATAAACCCTATTGACCCAAGTCTACGTT CGAGTTCGAGTACAAAAGAGCAGCCGAGAAGTTCCTGAACATGAAGGTGA CCGTTTTGCAAAAATGGTCAAGTCGAGCAAGACTGTTCTAGGAAGATAAA TACGCGGCAGAAAGAGTCCCAGAAAACAACACGCACACAGATGGACAAAA GTAGACGCCCGCTAGCTCGGACGAGATAAACAGGCCTTGCTCGGCTGTAC ACGCCCGCTAGGCATTCGTTTGTCGGGAATCTGTGGAGGGTTAGGATAAT TACTGCAGTAACTTACGTCAAGTGGGCGGAAAAGAAGGTATCTATTTTAC GGCTTGTTTCTGTCTGCCCACGAAAAACAGCTGCCCTCCCTTGTTTTTGA GCGCGTTCTATCCAAACCGAGACATTGATCATCAGTTAATCAAGAGCTAC AGCCTGAACCACGCCTTGTTTTCTTTTCCCGCGGAGAGTGAATCACTTGA CTAACGGTACCGGTCACCATCGCTGTGTTATACTGCGTGTCGCTGTCGCT ACACTTCACAATTCCATGCCTTCAGCCGCTTGGTACTTGGTCCATACGCA CGGCCACTGGTCACGATGTCGTCCGATTGCAGGCGTATGTTTTTTCGGAT CTTGTGTCCATAACGACGAATGCGTTGTTTTGAACAATCTCTAGGGACTT TGAAAAAAGGCAGCGAAAGAACGGGTGTGGGGTCTTCATTGCTTGAGTGA TTTTTGCAAGTTTAGAGCTCTACTGTATAGAACTTATTCGGGGATTTTTT GTCACACAAAAGCCTTTTCTTTTTTGTTCCTTAATGACGACACTGTCTCA ACCCTTGGCTTGATCATCGGTCCATATACAATCCTCATTTGTTCATGAAG GAAATATTGATGTAGTAGATTCGTCCATACGCACGATGCCCCCCCCCGTC CCCCCATGTAAAGATCCACATCACAAACGTCCAGATTCAAAATTAAGTTG TCCGGCGATTGTCGTTGGATCATGACAGGTTGTTCCTGGCGGGAGCGAAG AGTTCAACGTGTTCATCTCCCGAGAGCTCCACACAGGCCGGCCGGATGTG TTCCTGGGCGTCCTCCAAAGCGCATTTATTCTAGGTGCAGTATCCAGTAA TCGGTCATTGTCCACAAGATTGTACAGTTACGGGTGCGCCTAAGCCCGAT TTGAGGCCGATTTTTGGTGACAACGACCACGCAGTAAAGCGCCGAGTACT TGTATTCAGTGTCGGGTTTCAACGCACTTGAAACCTGAATTACTCGAGAC AGGTTAGGAACTGGTTCGTGAGACTCAACACGCACTTGGGTATGTGCCTA ATCTAGGACTTGGTCTTGCTGCACTTTAAATCCGCGTTATGATAATCCCA GACGGCCCAATAAATAGTGCTCTTTCTGCTACTTTCTCGGTGAAGACGTT TTTTTTCCTCATGACTTCAAAGATACATGAAATGAACCCTATCCGTGGTT TTCGCGCACACGATGCAAAAAACCGTACCCCAATCGACGACCTTGTTGAG GAGTATTTTGATTCACAAGATAGCCTATCAACACAAACAAGCACCACCCT AAACTACTCGAATGTAAACTGGCCCATCAACACCGAAAAAGCACCCAAAA CTACTCGAATTTAGAGTGTAGGAGAGGGCATCCTTCCAAACGTAATTATT CTCCACACATGTGGCCGTTAGGAAACGATTGGGTGGTAGTATGGGCATGA TTCGCGTCGCATATTGCGATGGTTCTAGCTCGTTGTTGTAACCAGCATTC TCAGGGTCCCAAACGCTCAAAACTTAGCTTTGCTCGACCTTTTTACCGTC TAGCTGTGAGCTGCAGCAGTACATGATAAAAGGGGACAATGTGGTTAATA CAGCAGCAGCAGCTCTGCTTTTTCGCGCATCCTACGCAAAACCACCGTCG AATTCACGACGTTACCGAGGAGCTTACCGAGGAGCTCAGTATGCTCACGT TGGAAAAAAAAAGAAGGCGAGGAAGATGAGCAGAGTGTGGCTCGGCGTGC ACGGGAGCTCACACTGCCTCTACAACAGCAGCTCATCCGCCAGAAGATCA GGATCAAGCAGGGACAGAGGGAGCTCCATGTCATGGAGAAATTGCATGCT AAGGTGATGAACAGGAAGAAGCAGCAGGAGAGTTCCCATGCAACGTTGAG GAGATAGGTCAGCAGCGACACTAGCAGCAGCAGCAGTCGTTTCCCCCTGT TGCTTTTGGCGACATCCTGCAACGAATTATATTATTCCCATGTTTTTTTT TCCATGGGCGTTTAGCGAATTCGTTTTTATTACGCCGCCGCCGCCGCCGC CGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTG CTGCTGCTAGTATGTGTGCATGTATGATTCACGCCAGCATTCCAACAGCA GCTGTAGAGAACAGCAGCAGCAGACTGCTGTATGCGCCAACAGCACCCAG TTGCTCATTGGGTACATAGTATATTGTACACTCCGTTGACGTTAAAAAAA TCCAATAGACTCGGTCGACATTCTAGACGATCACATGTGTATCGCTATCT TGATTTCGACGCCGCCGCCGCCGCCCCTACTGTCTGCTTTCGTTAACCCG TTCTTTCCGTAGTCAAGGTTAAGTCTGCTGGTATTGTACCAGACAGAATC GAGGAACGCTACAAGATGTTGATGCGGTCACTCATGCCACGATCCCGTGC CAAGGGTGCCCAGAAAGCACTCACTCTCCATCCCTGACGTCACGGCGATG TGGAGGACATGCAGGAGACAACTAGTGCGTGTTGCGAAGATGGTGGGAGG TGCGGTCGCTGCTGCTGCTACTACTGCTGCATCCTGGCATGTCGTACCAG CGACCCGGAGCGGCTGCTCTTGCTTGCGCTCGGCCATTTTTCCAGTGCCG TCCGGCCACTGAATGCGGTCTACTCGGGCTGGTGTGGGATACCGTACGTG CTGTGTGCGCAGATGCTACTGCTGTTGCACTCAACGGGAGCCAGTGAGAG GCAGCTCTTGTCTGTGGAGGAGTCTCTCTCTTCTGACTGTAGCTCCTCAT CCTTTCTGATGGCTTTTCCGGGGTTGTTCATGTTTTCGTATTTTTGGGTT ACCCTGCCTCTTTCGGGACTATTCATTTTTTAGTTTCTTCAGCGTACGCT GGGTCTCTTATTGTTCATTATTTTATTTTCTTATTTTTTCTTATTTTGCC TAAACCCTCTAAAAAGTCGGCAATAAATTTGTGGTCGTTGCGAAAAATTA GGTGGTCTTTGCGACCCGATTACCGCACTACAGAGGACTCAGGCGCACCC CTAACAGTTTGCCCGAAAAATATGATGGAAGCAGCAAAATAATTCCCGCA GCAGGGTTACAAGACGTAATTCGAACTCATTTTTTCCTCGAGAAGCGAGA GTAGGCAGTGTACTGATTCTTCGATTTTAGTATCCAAAATGAGCTTGTAT TTCGACCGAACTCGACGACATGTTTGCAACAGGAACGGATCACGACAACA ACAATGAATTATGACAATAGCACGTCCCTCGGTATCATGGCAGAGCATTA TCTTCCTGTATGCTACAGAAAATCGATCTTTTTATTTGTAGCTGACGGTC ATTAGTCGGTGACTATACTAAATATTAGTAATAGAAAAAGTGTCGACCGA CAGCCACACTTTCGTGCAAACATGACAGGGTCCTATTTTCATGGTCCAAT GAATGTGAAGATTGTCATTATTCACGCTTCGTACTAGAAAAAAAAGACAT GCTTAACAAACAGTCAGCTCCAGCGGGCAGTTAAACGAAATCGGCTGGCG AATGGTAAATGATTAGCATGGTATTGTAGTACCCTCATCGATGACATCAT AATACAGATCGACGAAGAAGCGGCAAGAGGCGAGAAGACGCTGCAACACT AAACCTGTACTGTAATGTGTAATGCCCATCGTGTTGTCGTGTCCCACCAC GTTTGTATGTCAACGGAACCCACTTGAATATTATGATTCAGCGGCGAGGT TCGACTATTCATGTTATTATCGATCAATGTCATGATCTATGATCGTATTG ATATTTCATCCTAATCTAAAAGCAGACATAACCAAAACGGCAGGGATGTC CGACGTTATATTTGATCGATAAATTTCCTTGTATTATCGGTGCTTGCATA ACGCCACCGCCATACAGGCAAATTCAGTATTACACTGTTGGAAGGCAGAC AGCTAATACAAGGTGCTTCGATTCACCGATTTGCCGTGCAGGTTTCAGCC TCTCGTGTCTCTTCTTCGCAAGAATGGCCAACTTCCATAGCCCATTCAGT CTCATGAGCGCTGGACTAGGAGTGTGGTGCGCATCTACCGTCATGGCGGG ACTAGCTCGCCCGTTGGAGAGCTATTTTTTCTTGCTCTTTGCACGGTGCG TGTCAAAAGGCGATGATGCTGTGTGCTGTATGTTTGTATGTCTTTTGGAT GGTGACGTTTATGGCCGAGTGGTTGATGATGATAAAGTCAGCATACCCCT GAAGATGACATCGATATGCTTGTTTGTTATGGTTTGGTTCTATTTTCTAG CGATATGCCTAGCAAGGTGATTTTGGTGATGACGCCGCTAGAGCGGGTTG ATGAAGTGTTAACCCACAGGGTTCTCGTTCACTCGGCTTTGATAGGTTAC TGTCGTTTTGCTCGACATGCCTATTGTCCTACATGCCCTAACTAACGGGT TGCGTTAGTATGTATGCTCCCAGTTCATTTGCTTTGAATCCCCATGTTTG TATTCTTGTTCTTCGCTTTTGGTGATTGATCGATGTGCATACTTGAATAC GGTGAGGCGAGTCAGTAATATGAAGGATTACCGGTCGGGAAACGAACCAT CAACAATCGCAAGCAAACACAGTAACTAATCAACAACTGAAGTGATACAC TAGAGCTGAAGCAGTTATTTTATCCGAAATATGATCCCAATGTGTGAACA TAGATCGCAGGCATGGTCGGTGTCACGCGAGAGCGCTCTATACGATCACG GTGTCTCTGGGACGGCTGGTTATGTAAAACACGTTGTCCAAGGGCAAACT CATTTTTTATTCTCTCTCTTTCGAAGGGAATTATCGACAAGCACCAAACA TCGGTATTAGAGTCATCGCTTGTGCCTGAGGGTACTCGGTCCCTTGCAAT TAATTTCACTCTTTCTGGACAAAGGTGACAACATCTTCCGGATCTTGGAT CTTGGATCTTGGATCTTGGATCTTGGATCTTGGACAGTTGGACGGGGATC CAAAATCGTTTGTTGATATAGGGGACAGGGGGTTTAGATAAGTATCCGTG TAACCGTCGGAATAACGTGCTCTCCACAAACGTGCTCCCATTGCCCTGTC GTTAGCAGGTTACTGTCAGGTGTCGGCGAGGCTAGCTTTGTAACCGTCGT CCCTCCACTTATCACGGAGACCGCCCCTCCAGGAGAGAGAGGAGTGTGGC TCGCCATATTCTACACGGCCATGCCTGTTGGCGCCGGCGTCGGATATGTG TACGGCAGCGTTTTGTCATCCTCCAGTCTTGGGTGAGTGTTGTTTGTATT TTTCATCTTCTGGGTGCTACCGGGTGGCTCCTACTGCTCAAGTTTTGGCA GTGCTGTCGGGGGGCTAGATAGACCACAGTGCAGTGCTACCGTGTATACT CGTGTGTGGGCCTATTATTATATATTTGTACCTTTGTAGGACCGGCCCCC AATGTACCTGTGGAAGACAATGGTTGATCGGTCTGAAAAATAAAAATAAA GTGAAGAACAAGTTTTGTAGCACGTTTCGGCCAATGGAACGGAAAGGGCA AGCAGTTGTGTGTATCGAGTCGGTGGCAAATTCGGTGGACAGTGAGCACA AACTGAGTGCTCTTGTGGATGATGACAGCTGATGACAGGATATTATGTGG GCCGGGAACACAGAGGAAGTTGTTGATTTTTTCAGGCTTGTCGCCGCAAT TTTCCATATCTTTGGGAAATTGGTGATATTTTTTTCCTTTCCACCCCGGA ATATGCAACCTCTGTTAACATCTTTCGTAAGTGCTGTGAGGGGAGGAGCT TAGTCCCACGACTAAGTTTCACATACAAAGTCCCGATTTAGATCCCCGAA GAACTCAGGTTAATGATCACGTCGGTCTCCCCTCGGTTTTAAGCTCAAAA ACCGAGGAAATTGTGGGGTAGCCGTAGTACGGGACTTGCCCGTTTTGGCA TACGGTTTTAGACTGCCCTTTGAGAAGCAGAATTAGTGGTGACATTAATA GTGGAAAATGATCAAGATGATGACAATGTACAAGCGCAGGAGATTCATGA CATTATCAGTACTATCAACACTGCAGGAATGCGGGCCGGAGACAACAAGC AACAGAAGCATCCGTGTGAAATTGTCGCAGGCCATGTTTAGCACGACGTA CGCCGACGCACACGTGAAAAATCGTCGCGGCTCTCTAAACATTTGACTGT CAGCACCTTACTCATGTTTTGATCAATGCACACTCATCATGTCCCCGACA CACGGTCAGGGCAGCCTGGAGATTGTTTTTAGCTGCCACTGCAGTCGGTT GCGGTTATACGGCATACTGAGTAGACGACCGTATTAGCGAGTCCCCCGAA CTCTTCAACAACTGGGTGTGAACCTTCTACAGGAGACCAACAGCGGGTGC TGTATTTCGGCTTTATCTTGCCGTTGCACCTTACAACCCCACTCTCATCT CCTTCTCTTATCTTCTGTCCTCTTTCATTGACTTATCGTGACTTGTCGTG ACTTACATAACTTCCCGTCACTCTCCAGGTGGCAGTGGGCTTTCTATCTC GAAGCGCTCGTCATGGCGCCGCTCGCAATAGCTTGCGGTCTCGTCCCACG AGACGAGGCCATGGCCGTCCCGAACTCGGCTGACTACGGCTGCTGCGTGT TGTCATCATCGCACGCGTCCGAAGCGACCACACCCAAGCACAACAAGAGT TCTCCTGCGGAGCTCAACTCCATCTCATATCGTGGCAGTGGCGGCGACAT CGCTTCCACAAATAACAGCACTAGCAATGCGTCGTCATCGTCCTTCTCAT CGTTAGCGTCGTCGCCCCCTCCAGGAATACCTCCAGGGCAATCAGCAGTC TTACCCTTGAAGGACACCGAGGAAGCGCACGGACAACGACCCAGGCGGCG GAGGGTGCACGTGTCAAGACCAGGGTCGGGATCAGAATCGAGGGGCAGCA CGGATGAAGAGCATGACCATGGCAATGGCTATCATTTTGTTGAAGAAGAG GTAGAGCGGGGAGATCAGGAGTTGCCCCGGGACGTACGTAGGGGTGTCAT CGCGATGGGGGCTGGTGCCGAAGATGAGGCTCTTATGACGAACATGGGCA CGAGCAACAGCCGCGGGCCTGATGATAGGAATGGCGGCGCCGGCGGCGGT GATACTGGTAGGAGACGAGGTAGAGAGAGGAGTCCTAGTTTCAGCCAGAT GGGAGCGTCCAGTGCCCTGGGAAGAAGTGGGGAAGAGAGGCTTGGCGGCG GCGAGGAGGTCGATGGTCAGGGTGAGGAAGGGAAGCACCCGGGACCAGGG ATTGTCAATCTATATGAAGAACAAGAAGATGGTGAAGATGAACAAGAAAA AAGTTCTTATTTTTATTTGGGGTCGATAAACGCCGGAAGCAAAGGTCGTC CGTTGCCTCTTCCTCGTCGACCGCCTGTTGTGGTGGATCATGACCGAATA GTGGTACAGCGGCGACGCGATTGTGGCAGCGATAATGAACACGTGAGCTT TCCTACTCATGCTACAACGACCACTACGACTCATGTCAATGGTACGACCC GTAGTCATCATCCAAACCTGGTTGGAGACCTGCAGCAGGTCCTAGACCGC CCGATCTTTGCCCTCGTGGTTTTTGGTGCTGCCGCCAATGCTGCCGTCAC TGCCGGAATGAGCACCTTCGGCACAGGGTTTATCACGGCGCTCGAGCTCC TGCACACTGAGACCGCGGCTGCGGCAACATTCGGGGTCATCATCTGTGCA GCCGGACTGGTCGGGACCCCTGCCGGGGGAGCTCTGATTGACGCAGCGGA TCCCGAGGGCAGACTAGTGGACGAAAAAAAGCTGGAAGTCGTGATGCGTC AAGCGATGTGGCTGGTTTGTGGTGCTACAGGTAAGAGAAGAGTTGTGGGT CGTCTTGATAGGGAGTGGGATAAGCGAGAAGAGCGGTATTATGGGGAGTG CTCGTGTTTTGCATACCGTACTTGTTGAAAACTCGGCAATTGAAATTTGT GTCATGCGACAAAAAAAATATATATATATATATATATATATATATATGCA GAAATCGCAAACTACAGGGAGACGGGGAAGTAGCAAAAAAAATTGGAGCA ATTTTCGCACACCCTGTCTCTGACTTGGACTTTGGTCGTTATATCCATGT GTCCTCTTGCGCTCGAGACCGCTTTTTTGCTGAAATAACATATGAACACA TGTTCGTTTTCAATGGAATAATGTGACGACAGTCGTGCTGGTGGTGGCCA CGGCGCAGTCGTCCCTCCTGCCGTTTCTCGTCCTCTTCTTCGTTGGAGCT GTTCTTCTCTTTTCTTACACTCCTCACATTAACCTGGCGGTAATGCTGGC GGCTCCTGCGCACCTTCGGCCGCTGGCGATCGCGATCAACTCTGTCATGC TCCACGTGCTGGGGGACGTACCCAGCCCTACCGTTGTGGGGGCGATCAAA GACGCCCTCGCTCCGCATTGTGTCGCGTCGTCATCCAACCATGATAACGT CGTACATGACATGATACATAACGTTACCGCGGCCCAAGAGCAACATCGTC ACCAGTACCACTACCAACCACAAGATGAACTACAAGAGCCCTGGCCGATT GGACACGACGTACAAAGCTCGCCTGATGCTCTCCTCGCCGGGTTGTCCAT GGCTAAGGCTAGTAGTGCTCGTTTTGTCGATGGGGTGGTGTGGACAGGGC TAGGGGAAGGACTTGAAACCGTGGAGAGTCCTAGTGATGAGGCTTGGGGG TCAGGGCAAGGGATAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3056:3993..16960+

>mRNA_H-paniculata_contig3056.8279.1 ID=mRNA_H-paniculata_contig3056.8279.1|Name=mRNA_H-paniculata_contig3056.8279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5190bp|location=Sequence derived from alignment at H-paniculata_contig3056:3993..16960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTACCCTGCGACCGAGGATGATCGCGGTGCTCAACTGCTGTTATC
AGCAAATTCGAATCACTTCAACTGCAGCGGCGCGGACCCCGCCCTAGATG
CAGATGATGCAGATGGTGCCATAGCTAGCGTGAGGAGGGGCGGTGGCGTG
AGGGTGAGGGGGTGCATAAGAACTTCGCTCAGGTGGATAGATGAGCTGCG
GGAGTCTCTGCGGGGGCGTCGGCTGTTCACTCTGTTCGCGCTTGTCAACC
TTGTCAACTACGTTGACAGAGGGATGGGGTACCCTGCGACCGAGGATGAT
CGCGGTGCTCAACTGCTGTTATCAGCAAATTCGAATCACTTCAACTGCAG
CGGCGCGGACCCCGCCCTAGATGCAGATGATGCAGATGGTGCCATAGCTA
GCGTGAGGAGGGGCGGTGGCGTGAGGGTGAGGGGGTGCATAAGAACTTCG
CTCAGGTGGATAGATGAGCTGCGGGAGTCTCTGCGGGGGCGTCGGCTGTT
CACTCTGTTCGCGCTTGTCAACCTTGTCAACTACGTTGACAGAGGGGTTG
TTCCTGGCGGGAGCGAAGAGTTCAACGTGTTCATCTCCCGAGAGCTCCAC
ACAGGCCGGCCGGATGTGTTCCTGGGCGTCCTCCAAAGCGCATTTATTCT
AGGTTGTTCCTGGCGGGAGCGAAGAGTTCAACGTGTTCATCTCCCGAGAG
CTCCACACAGGCCGGCCGGATGTGTTCCTGGGCGTCCTCCAAAGCGCATT
TATTCTAGGTTTCAGCCTCTCGTGTCTCTTCTTCGCAAGAATGGCCAACT
TCCATAGCCCATTCAGTCTCATGAGCGCTGGACTAGGAGTGTGGTGCGCA
TCTACCGTCATGGCGGGACTAGCTCGCCCGTTGGAGAGCTATTTTTTCTT
GCTCTTTGCACGGTTTCAGCCTCTCGTGTCTCTTCTTCGCAAGAATGGCC
AACTTCCATAGCCCATTCAGTCTCATGAGCGCTGGACTAGGAGTGTGGTG
CGCATCTACCGTCATGGCGGGACTAGCTCGCCCGTTGGAGAGCTATTTTT
TCTTGCTCTTTGCACGGTTACTGTCAGGTGTCGGCGAGGCTAGCTTTGTA
ACCGTCGTCCCTCCACTTATCACGGAGACCGCCCCTCCAGGAGAGAGAGG
AGTGTGGCTCGCCATATTCTACACGGCCATGCCTGTTGGCGCCGGCGTCG
GATATGTGTACGGCAGCGTTTTGTCATCCTCCAGTCTTGGGTTACTGTCA
GGTGTCGGCGAGGCTAGCTTTGTAACCGTCGTCCCTCCACTTATCACGGA
GACCGCCCCTCCAGGAGAGAGAGGAGTGTGGCTCGCCATATTCTACACGG
CCATGCCTGTTGGCGCCGGCGTCGGATATGTGTACGGCAGCGTTTTGTCA
TCCTCCAGTCTTGGGTGGCAGTGGGCTTTCTATCTCGAAGCGCTCGTCAT
GGCGCCGCTCGCAATAGCTTGCGGTCTCGTCCCACGAGACGAGGCCATGG
CCGTCCCGAACTCGGCTGACTACGGCTGCTGCGTGTTGTCATCATCGCAC
GCGTCCGAAGCGACCACACCCAAGCACAACAAGAGTTCTCCTGCGGAGCT
CAACTCCATCTCATATCGTGGCAGTGGCGGCGACATCGCTTCCACAAATA
ACAGCACTAGCAATGCGTCGTCATCGTCCTTCTCATCGTTAGCGTCGTCG
CCCCCTCCAGGAATACCTCCAGGGCAATCAGCAGTCTTACCCTTGAAGGA
CACCGAGGAAGCGCACGGACAACGACCCAGGCGGCGGAGGGTGCACGTGT
CAAGACCAGGGTCGGGATCAGAATCGAGGGGCAGCACGGATGAAGAGCAT
GACCATGGCAATGGCTATCATTTTGTTGAAGAAGAGGTAGAGCGGGGAGA
TCAGGAGTTGCCCCGGGACGTACGTAGGGGTGTCATCGCGATGGGGGCTG
GTGCCGAAGATGAGGCTCTTATGACGAACATGGGCACGAGCAACAGCCGC
GGGCCTGATGATAGGAATGGCGGCGCCGGCGGCGGTGATACTGGTAGGAG
ACGAGGTAGAGAGAGGAGTCCTAGTTTCAGCCAGATGGGAGCGTCCAGTG
CCCTGGGAAGAAGTGGGGAAGAGAGGCTTGGCGGCGGCGAGGAGGTCGAT
GGTCAGGGTGAGGAAGGGAAGCACCCGGGACCAGGGATTGTCAATCTATA
TGAAGAACAAGAAGATGGTGAAGATGAACAAGAAAAAAGTTCTTATTTTT
ATTTGGGGTCGATAAACGCCGGAAGCAAAGGTCGTCCGTTGCCTCTTCCT
CGTCGACCGCCTGTTGTGGTGGATCATGACCGAATAGTGGTACAGCGGCG
ACGCGATTGTGGCAGCGATAATGAACACGTGAGCTTTCCTACTCATGCTA
CAACGACCACTACGACTCATGTCAATGGTACGACCCGTAGTCATCATCCA
AACCTGGTTGGAGACCTGCAGCAGGTCCTAGACCGCCCGATCTTTGCCCT
CGTGGTTTTTGGTGCTGCCGCCAATGCTGCCGTCACTGCCGGAATGAGCA
CCTTCGGCACAGGGTTTATCACGGCGCTCGAGCTCCTGCACACTGAGACC
GCGGCTGCGGCAACATTCGGGGTCATCATCTGTGCAGCCGGACTGGTCGG
GACCCCTGCCGGGGGAGCTCTGATTGACGCAGCGGATCCCGAGGGCAGAC
TAGTGGACGAAAAAAAGCTGGAAGTCGTGATGCGTCAAGCGATGTGGCTG
GTTTGTGGTGCTACAGGTGGCAGTGGGCTTTCTATCTCGAAGCGCTCGTC
ATGGCGCCGCTCGCAATAGCTTGCGGTCTCGTCCCACGAGACGAGGCCAT
GGCCGTCCCGAACTCGGCTGACTACGGCTGCTGCGTGTTGTCATCATCGC
ACGCGTCCGAAGCGACCACACCCAAGCACAACAAGAGTTCTCCTGCGGAG
CTCAACTCCATCTCATATCGTGGCAGTGGCGGCGACATCGCTTCCACAAA
TAACAGCACTAGCAATGCGTCGTCATCGTCCTTCTCATCGTTAGCGTCGT
CGCCCCCTCCAGGAATACCTCCAGGGCAATCAGCAGTCTTACCCTTGAAG
GACACCGAGGAAGCGCACGGACAACGACCCAGGCGGCGGAGGGTGCACGT
GTCAAGACCAGGGTCGGGATCAGAATCGAGGGGCAGCACGGATGAAGAGC
ATGACCATGGCAATGGCTATCATTTTGTTGAAGAAGAGGTAGAGCGGGGA
GATCAGGAGTTGCCCCGGGACGTACGTAGGGGTGTCATCGCGATGGGGGC
TGGTGCCGAAGATGAGGCTCTTATGACGAACATGGGCACGAGCAACAGCC
GCGGGCCTGATGATAGGAATGGCGGCGCCGGCGGCGGTGATACTGGTAGG
AGACGAGGTAGAGAGAGGAGTCCTAGTTTCAGCCAGATGGGAGCGTCCAG
TGCCCTGGGAAGAAGTGGGGAAGAGAGGCTTGGCGGCGGCGAGGAGGTCG
ATGGTCAGGGTGAGGAAGGGAAGCACCCGGGACCAGGGATTGTCAATCTA
TATGAAGAACAAGAAGATGGTGAAGATGAACAAGAAAAAAGTTCTTATTT
TTATTTGGGGTCGATAAACGCCGGAAGCAAAGGTCGTCCGTTGCCTCTTC
CTCGTCGACCGCCTGTTGTGGTGGATCATGACCGAATAGTGGTACAGCGG
CGACGCGATTGTGGCAGCGATAATGAACACGTGAGCTTTCCTACTCATGC
TACAACGACCACTACGACTCATGTCAATGGTACGACCCGTAGTCATCATC
CAAACCTGGTTGGAGACCTGCAGCAGGTCCTAGACCGCCCGATCTTTGCC
CTCGTGGTTTTTGGTGCTGCCGCCAATGCTGCCGTCACTGCCGGAATGAG
CACCTTCGGCACAGGGTTTATCACGGCGCTCGAGCTCCTGCACACTGAGA
CCGCGGCTGCGGCAACATTCGGGGTCATCATCTGTGCAGCCGGACTGGTC
GGGACCCCTGCCGGGGGAGCTCTGATTGACGCAGCGGATCCCGAGGGCAG
ACTAGTGGACGAAAAAAAGCTGGAAGTCGTGATGCGTCAAGCGATGTGGC
TGGTTTGTGGTGCTACAGTCGTGCTGGTGGTGGCCACGGCGCAGTCGTCC
CTCCTGCCGTTTCTCGTCCTCTTCTTCGTTGGAGCTGTTCTTCTCTTTTC
TTACACTCCTCACATTAACCTGGCGGTAATGCTGGCGGCTCCTGCGCACC
TTCGGCCGCTGGCGATCGCGATCAACTCTGTCATGCTCCACGTGCTGGGG
GACGTACCCAGCCCTACCGTTGTGGGGGCGATCAAAGACGCCCTCGCTCC
GCATTGTGTCGCGTCGTCATCCAACCATGATAACGTCGTACATGACATGA
TACATAACGTTACCGCGGCCCAAGAGCAACATCGTCACCAGTACCACTAC
CAACCACAAGATGAACTACAAGAGCCCTGGCCGATTGGACACGACGTACA
AAGCTCGCCTGATGCTCTCCTCGCCGGGTTGTCCATGGCTAAGGCTAGTA
GTGCTCGTTTTGTCGATGGGGTGGTGTGGACAGGGCTAGGGGAAGGACTT
GAAACCGTGGAGAGTCCTAGTGATGAGGCTTGGGGGTCAGGGCAAGGGAT
AGGGTCGTGCTGGTGGTGGCCACGGCGCAGTCGTCCCTCCTGCCGTTTCT
CGTCCTCTTCTTCGTTGGAGCTGTTCTTCTCTTTTCTTACACTCCTCACA
TTAACCTGGCGGTAATGCTGGCGGCTCCTGCGCACCTTCGGCCGCTGGCG
ATCGCGATCAACTCTGTCATGCTCCACGTGCTGGGGGACGTACCCAGCCC
TACCGTTGTGGGGGCGATCAAAGACGCCCTCGCTCCGCATTGTGTCGCGT
CGTCATCCAACCATGATAACGTCGTACATGACATGATACATAACGTTACC
GCGGCCCAAGAGCAACATCGTCACCAGTACCACTACCAACCACAAGATGA
ACTACAAGAGCCCTGGCCGATTGGACACGACGTACAAAGCTCGCCTGATG
CTCTCCTCGCCGGGTTGTCCATGGCTAAGGCTAGTAGTGCTCGTTTTGTC
GATGGGGTGGTGTGGACAGGGCTAGGGGAAGGACTTGAAACCGTGGAGAG
TCCTAGTGATGAGGCTTGGGGGTCAGGGCAAGGGATAGGG
back to top