mRNA_H-paniculata_contig30557.8278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30557.8278.1
Unique NamemRNA_H-paniculata_contig30557.8278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30557.8278.1 vs. uniprot
Match: A0A6H5JJB5_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.040e-23
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 FNSPQSDQFCVNRRGQKLHLRIAMPPHSVASKAIVFFYHGYGAHVNGPTIREISEGMAANGYVLVLADAHGHGY 222
            FN P+ D F +N R Q+LHLR  +P   V  KA++F+YHGY AH++GPT RE +EGMAA+GY ++  D HGHGY
Sbjct:   31 FNLPKGDNFFINSRKQRLHLRTFLPESGVEMKALLFWYHGYAAHISGPTFREFAEGMAADGYAVIAVDQHGHGY 104
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BLAST of mRNA_H-paniculata_contig30557.8278.1 vs. uniprot
Match: A0A813GTS4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GTS4_POLGL)

HSP 1 Score: 55.8 bits (133), Expect = 2.820e-7
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:   10 PQSDQFCVNRRGQK-LHLRIAMP---PHSVASKAIVFFYHGYGAHVNGPTIREISEGMAANGYVLVLADAHGHGY 222
            P +  F     G K L +R A+P   PH V  + ++FF HGYGAH+N P + +  + +AA GY +   D  GHGY
Sbjct:  936 PPTPHFFTFEAGSKRLQIRNALPACNPHLV--RGLIFFLHGYGAHINRPMLHQWLQRLAAAGYAIFSFDFPGHGY 1008
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30557.8278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJB5_9PHAE2.040e-2355.41Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
A0A813GTS4_POLGL2.820e-740.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30557contigH-paniculata_contig30557:1061..1288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D7FHN5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsCOG2267@1,KOG1455@2759
Ec32 ortholog descriptionPutative lysophospholipase
Ec32 orthologEc-24_003890.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.6767938-CDS-H-paniculata_contig30557:1060..12881622929938.6767938-CDS-H-paniculata_contig30557:1060..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30557 1061..1288 +
1691481078.235826-CDS-H-paniculata_contig30557:1060..12881691481078.235826-CDS-H-paniculata_contig30557:1060..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30557 1061..1288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30557.8278.1prot_H-paniculata_contig30557.8278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30557 1061..1288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30557.8278.1

>prot_H-paniculata_contig30557.8278.1 ID=prot_H-paniculata_contig30557.8278.1|Name=mRNA_H-paniculata_contig30557.8278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
FNSPQSDQFCVNRRGQKLHLRIAMPPHSVASKAIVFFYHGYGAHVNGPTI
REISEGMAANGYVLVLADAHGHGYR*
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mRNA from alignment at H-paniculata_contig30557:1061..1288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30557.8278.1 ID=mRNA_H-paniculata_contig30557.8278.1|Name=mRNA_H-paniculata_contig30557.8278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig30557:1061..1288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACTCCCCCCAAAGCGACCAATTCTGCGTCAACAGACGGGGGCAAAA
GTTGCACCTTAGGATCGCGATGCCACCACACTCGGTTGCAAGCAAGGCGA
TCGTGTTCTTTTACCACGGTTACGGGGCGCACGTGAATGGGCCAACTATC
CGGGAGATAAGCGAGGGTATGGCAGCAAACGGATACGTGTTGGTCTTGGC
TGATGCCCACGGGCATGGGTACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30557:1061..1288+

>mRNA_H-paniculata_contig30557.8278.1 ID=mRNA_H-paniculata_contig30557.8278.1|Name=mRNA_H-paniculata_contig30557.8278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig30557:1061..1288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAACTCCCCCCAAAGCGACCAATTCTGCGTCAACAGACGGGGGCAAAA
GTTGCACCTTAGGATCGCGATGCCACCACACTCGGTTGCAAGCAAGGCGA
TCGTGTTCTTTTACCACGGTTACGGGGCGCACGTGAATGGGCCAACTATC
CGGGAGATAAGCGAGGGTATGGCAGCAAACGGATACGTGTTGGTCTTGGC
TGATGCCCACGGGCATGGGTACAGGTGATTCAACTCCCCCCAAAGCGACC
AATTCTGCGTCAACAGACGGGGGCAAAAGTTGCACCTTAGGATCGCGATG
CCACCACACTCGGTTGCAAGCAAGGCGATCGTGTTCTTTTACCACGGTTA
CGGGGCGCACGTGAATGGGCCAACTATCCGGGAGATAAGCGAGGGTATGG
CAGCAAACGGATACGTGTTGGTCTTGGCTGATGCCCACGGGCATGGGTAC
AGGTGA
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