mRNA_H-paniculata_contig3055.8276.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3055.8276.1
Unique NamemRNA_H-paniculata_contig3055.8276.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3055.8276.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.440e-18
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   13 GSIKVQHKSHILKLMFICTISRPDPEHDFDGKIRIWRVCTIREAQRTTVRRARG-----------------------DTYEVDVTIDAEWYREWYVNDLLP 246
            G  +V H+SH+ K+M I   +RPDP HDFDGKI IWR+C I  AQR++ +                           + YE D TIDAEWY++WY++ LLP
Sbjct:  181 GPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLP 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3055.8276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.440e-1841.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3055contigH-paniculata_contig3055:15863..16112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.6003458-CDS-H-paniculata_contig3055:15862..161111622929938.6003458-CDS-H-paniculata_contig3055:15862..16111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3055 15863..16111 +
1691481078.2133772-CDS-H-paniculata_contig3055:15862..161111691481078.2133772-CDS-H-paniculata_contig3055:15862..16111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3055 15863..16111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3055.8276.1prot_H-paniculata_contig3055.8276.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3055 15863..16111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3055.8276.1

>prot_H-paniculata_contig3055.8276.1 ID=prot_H-paniculata_contig3055.8276.1|Name=mRNA_H-paniculata_contig3055.8276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
GNKVGSIKVQHKSHILKLMFICTISRPDPEHDFDGKIRIWRVCTIREAQR
TTVRRARGDTYEVDVTIDAEWYREWYVNDLLPE
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mRNA from alignment at H-paniculata_contig3055:15863..16112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3055.8276.1 ID=mRNA_H-paniculata_contig3055.8276.1|Name=mRNA_H-paniculata_contig3055.8276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=250bp|location=Sequence derived from alignment at H-paniculata_contig3055:15863..16112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACAAAGTTGGCTCGATCAAGGTGCAGCACAAGAGTCACATCCTCAA
ATTGATGTTTATCTGCACCATTTCGCGCCCCGATCCTGAACACGACTTCG
ACGGAAAGATCCGAATCTGGCGCGTCTGCACTATAAGAGAGGCACAAAGG
ACTACCGTGCGGCGCGCTAGGGGCGACACGTACGAGGTCGACGTCACCAT
CGATGCAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCCAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3055:15863..16112+

>mRNA_H-paniculata_contig3055.8276.1 ID=mRNA_H-paniculata_contig3055.8276.1|Name=mRNA_H-paniculata_contig3055.8276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig3055:15863..16112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACAAAGTTGGCTCGATCAAGGTGCAGCACAAGAGTCACATCCTCAA
ATTGATGTTTATCTGCACCATTTCGCGCCCCGATCCTGAACACGACTTCG
ACGGAAAGATCCGAATCTGGCGCGTCTGCACTATAAGAGAGGCACAAAGG
ACTACCGTGCGGCGCGCTAGGGGCGACACGTACGAGGTCGACGTCACCAT
CGATGCAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCCAGAGG
GAAACAAAGTTGGCTCGATCAAGGTGCAGCACAAGAGTCACATCCTCAAA
TTGATGTTTATCTGCACCATTTCGCGCCCCGATCCTGAACACGACTTCGA
CGGAAAGATCCGAATCTGGCGCGTCTGCACTATAAGAGAGGCACAAAGGA
CTACCGTGCGGCGCGCTAGGGGCGACACGTACGAGGTCGACGTCACCATC
GATGCAGAATGGTACCGGGAGTGGTACGTCAACGACCTCTTGCCAGAG
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