mRNA_H-paniculata_contig30539.8272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30539.8272.1
Unique NamemRNA_H-paniculata_contig30539.8272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30539.8272.1 vs. uniprot
Match: D8LNT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.790e-20
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 QGANRIYQRFLHPYMVQYEGNIDNSLEGMRVEATRRIQSLGATAANEIARAVTRQGTSA-------------KDQLLARVLGAAVSRGDAGMDDR 246
            QGA++IY+R LHPY+ +YE NID+ LE MR  ATRRIQSLGA+AA EIA+AVT+QG++A             KD +LARVLG A + G   +D+R
Sbjct:   83 QGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTAVGVAACRRMDRSFKDLMLARVLGIAAAGGAGALDER 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30539.8272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNT6_ECTSI3.790e-2054.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30539contigH-paniculata_contig30539:389..2561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D8LNT6
KEGG koko:K17279
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitotic nuclear envelope reassembly
EggNOG OGsCOG5052@1,KOG1726@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.1749253-CDS-H-paniculata_contig30539:388..5651622929938.1749253-CDS-H-paniculata_contig30539:388..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30539 389..565 +
1691481078.0228243-CDS-H-paniculata_contig30539:388..5651691481078.0228243-CDS-H-paniculata_contig30539:388..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30539 389..565 +
1622929938.1913102-CDS-H-paniculata_contig30539:2492..25611622929938.1913102-CDS-H-paniculata_contig30539:2492..2561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30539 2493..2561 +
1691481078.0348542-CDS-H-paniculata_contig30539:2492..25611691481078.0348542-CDS-H-paniculata_contig30539:2492..2561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30539 2493..2561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30539.8272.1prot_H-paniculata_contig30539.8272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30539 389..2561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30539.8272.1

>prot_H-paniculata_contig30539.8272.1 ID=prot_H-paniculata_contig30539.8272.1|Name=mRNA_H-paniculata_contig30539.8272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
QGANRIYQRFLHPYMVQYEGNIDNSLEGMRVEATRRIQSLGATAANEIAR
AVTRQGTSAKDQLLARVLGAAVSRGDAGMDDR
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mRNA from alignment at H-paniculata_contig30539:389..2561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30539.8272.1 ID=mRNA_H-paniculata_contig30539.8272.1|Name=mRNA_H-paniculata_contig30539.8272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-paniculata_contig30539:389..2561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGCCAATCGGATCTACCAACGCTTCCTCCACCCGTACATGGTGCA
GTACGAGGGAAATATTGACAACAGCTTGGAGGGCATGCGCGTGGAGGCTA
CTCGACGCATACAGTCTCTCGGGGCAACTGCGGCGAACGAGATAGCCAGG
GCGGTCACCAGGCAAGGGACGTCGGCTGTGAGTTTCTGTTGTCATTTTTT
GTTGCTCTTGTCCCGTATACCATGGCATCACACATACTACGGGATTCTGT
GTGAATTATCACGGGAAAACGTTGTGCAGAGGGTTGACATATCACCCGGT
ATATGGCTATCTACGATATGGCTGCGCACGGTACAGTGTCGGGGATGTTG
CTGTTACTGTTGGCTGTTAATGATGCTGCTGCTATCTTTTCCGTATTTAT
TCTTTCTGTTTCGTGGGTGCCCTAATTCTGGATGACGGCCTCACGTACCG
AAATCGTTCTGCTATTTACGATCTTTTGATTTTTTGTTCTTTGGAGCATG
ACACTCTTCTGGATGTGGCTTCGATCCTCAAAGATCTTGATGTCGTTTCG
TATTCTCTTTTTTTTTTTTTTTTTCGCCGACGACGTAAAAGGTGCCGCCG
TTTGCTTACTTTAACGTTTTTTTCAACCCCTCCGAAAAGGGTGGAATATC
GCGTGTGCCTCTTGATTGTGTTTAGCCAAAATACGGCATTTAGTTCACAG
TAAACGTTAAATGACCAATGACCATGTATCAGCGTTTTTTTAAAGTATGT
ATGGAAGCACATGCTGTCTACAACCGGTTGTTCAGGACACGAAAGTCATG
CGTGGCGCGTACATGAGGAAAAACACGCCTCTATTGTAGAAACCAAACCC
TATCGTGGAACCGGATCCTGTCTGTGCCTCGTGATCGTAGTTAAGGAACA
AGAAGAGAATGTAACGGAATTTGTTTCTGACCGTCCATGTCTGATGATAT
AGCTGAGAATGCGATACTTTCACATTTTTATGCCAGTCGTGAAGGGAGCG
AAAGTCATGATCTAATGGTTGGTGTACATGATAAACACGACTGCTATCTT
CTATATATGTGTTCCAAGCCTGAAATATTACAAATCTCAACCATTCGGAT
GCCTGACTTTCCACGCAAAATTCTGGAAAAAGCAACGCTAATGAAGTCGT
CCATGATTCACGGGGGCTGGGAGTTGTCGCTTCTTTTCACTCGCACAGTG
CACGTAGCACAGGCAGGGAGGCTCTGCGTATCATGACTGAAGCGCTCGTT
CAGATTTAATTTTCTGTTCCGAGAGGCCTTCGTCGTTCTAAGTGTTGACA
ACGAAGCGCTATAAGCCGGGAAACCCCGAAAAAGACGGTGCTTATTTGGG
TGGCTTCGACCAACCAATCAAGCAGACGAAGAAGCCTGAGCCAGTCTTGT
TTTCCCGTGTTTTTACGATGAGCAGGGCGGCTTCTGTATCTCTCCCTACT
GTCGTGCGTTCCTTTGGGAATTTTTCACCACTGACGACCGACCCCCTGGT
CAGTTTGGAGTGCTACTATAGGCTATTATTTGACGGTTACGAAAAATGTG
CGTGTTTGCTTGTTGTTGCTTTACGCTAATTCCAAGGTTGTAAGTCCCCA
AACGACTAAGTATGACCCCCTTTTGCACCTGACATGCACCGCACTAACAA
GCCGTCTAGAGTTGGTTGGGTATTCTGGCGACGCGCTCCTCAGTAATGAT
GACTAGTCGTGAGCACATGATGTCCTGGGAGAGACTGGCTCTCGAGGGGA
CACCGCCTGCTCTGTGCGGGTCGGTTCTAAGTCTTGGGATGTAGCGCGGA
GCAAGCACTTGGGTTTTGTTCTGTCGGAGATGGAGTGACCGTCCAGCCTC
GGACACAGCTAGAAAGCTGTTCCGAAAAAGGGACAAAACACCATTGATCG
ATGTGTAGAGGGTCGGGGTTTAGGAAACCCAGGAAGGTCAGGAACGTGCT
CTCCATAGTCGATATCAAATCTATCTTTTGACCGTTACAAAGTCCGGTTC
CCGAAGGGTTGATACATGTCTGTCTGTCAATCTATCTCTCTGTCTGTCCC
CTTCTCGTATCGCCCATCCATTGCGCTTGCTCGTCGTTGCTACCGAGGGA
GTAGAAGGACCAGCTTCTTGCCCGTGTGCTGGGGGCAGCGGTCAGCAGAG
GAGACGCAGGCATGGACGACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30539:389..2561+

>mRNA_H-paniculata_contig30539.8272.1 ID=mRNA_H-paniculata_contig30539.8272.1|Name=mRNA_H-paniculata_contig30539.8272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig30539:389..2561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGCCAATCGGATCTACCAACGCTTCCTCCACCCGTACATGGTGCA
GTACGAGGGAAATATTGACAACAGCTTGGAGGGCATGCGCGTGGAGGCTA
CTCGACGCATACAGTCTCTCGGGGCAACTGCGGCGAACGAGATAGCCAGG
GCGGTCACCAGGCAAGGGACGTCGGCTCAGGGCGCCAATCGGATCTACCA
ACGCTTCCTCCACCCGTACATGGTGCAGTACGAGGGAAATATTGACAACA
GCTTGGAGGGCATGCGCGTGGAGGCTACTCGACGCATACAGTCTCTCGGG
GCAACTGCGGCGAACGAGATAGCCAGGGCGGTCACCAGGCAAGGGACGTC
GGCTAAGGACCAGCTTCTTGCCCGTGTGCTGGGGGCAGCGGTCAGCAGAG
GAGACGCAGGCATGGACGACAGGAAGGACCAGCTTCTTGCCCGTGTGCTG
GGGGCAGCGGTCAGCAGAGGAGACGCAGGCATGGACGACAGG
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