mRNA_H-paniculata_contig30521.8269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 163 bits (413), Expect = 6.020e-40 Identity = 84/180 (46.67%), Postives = 111/180 (61.67%), Query Frame = 3
Query: 801 TYAPXXXXXXAASSSPPGAFQSLTVRFEPQDKFGFSPGSV-------HGAGMAFANQGRDLERGREKWWTDSDASNMFTGNDQHLFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
T+AP A++ PG+ L RF + P V G G A + Q GREK+W DS A+N F + +F++ PVP GKEY+Q+GNG +LRVQCVG +N+AFHM GE DFRVQ ++VY++ I FNLFSLHH QRKQ +VL+++GVHLFDGRL+F + G
Sbjct: 575 THAPPHSSPPGAAAPAPGSLHFLMARFVSAGEI--IPSGVVASTERESGNGFALSAQNPLSRFGREKFWADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVG 752
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 151 bits (381), Expect = 8.760e-36 Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 3
Query: 924 GAGMAFANQGRDLERGREKWWTDSDASNMFTGNDQHLFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
G G A + Q GRE +W DS A+N F + +F++ PVP GKEY+Q+GNG +LRVQC+GT+N+AFHM GE DF VQ ++VY++ I FNLFSLHH QRKQ +VL+++GVHLFDG+ +F + G
Sbjct: 319 GKGFALSVQNPLSHFGRENFWADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKRSFAYSDVG 450
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE) HSP 1 Score: 127 bits (320), Expect = 4.380e-31 Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
+F++ PVP GKEY+Q+GNG +LRVQCVG +N+AFHM GE DF VQT++VY++ I FN FSLHH QR+Q +VL+++GVHLF GRL+F + G
Sbjct: 1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSLHHTQRRQRIVLDETGVHLFVGRLSFAYSDVG 96
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.650e-29 Identity = 58/96 (60.42%), Postives = 76/96 (79.17%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
+F++ PVP GKEY+Q+GNG +LRVQCVG +N+AFHM GE DF VQ ++VY++ I FNLFSLHH QRKQ +VL+++GVHLFDGRL+F + G
Sbjct: 1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVG 96
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5KNR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR6_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.890e-28 Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
+F+ PVP KEY+Q+GNG +L VQC+GT+N+AFHM GE DF VQ ++VY++ I FNLFSLHH QRKQ +VL+++GVHLFDG++ F + G
Sbjct: 1 MFDSRPVPTSKEYIQVGNGAYLCVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKIFFAYSDVG 96
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE) HSP 1 Score: 123 bits (308), Expect = 2.250e-27 Identity = 51/96 (53.12%), Postives = 75/96 (78.12%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
+F++ P+P G+E++Q+GN +LRVQCVG+ N+ FHM P+GE DF VQ ++VY++ I FNLFSLHH QR+Q + L+D+GVHLF+G+L+F + G
Sbjct: 1 MFDMKPIPAGREFIQVGNSAYLRVQCVGSNNMTFHMPDPSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVG 96
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE) HSP 1 Score: 124 bits (312), Expect = 4.720e-27 Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
+F++ PVP GKEY+Q+GNG LRVQC+GT+N+AFHM GE D VQ ++VY++ I FNLFSLHH QRKQ +VL+++GVHLFDG++ F + G
Sbjct: 1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGKIFFAYSDVG 96
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.970e-26 Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHM-GAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
++NI PVPPGKEY+++GNG LRV+CVG++NLAFHM G + E DF VQ T+VY++ I+FNLFSLH Q+K ++L++ GVHLF GRL+F + G
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIG 97
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.050e-25 Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHM-GAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVLNDSGVHLFDGRLTFPFGSNG 1319
++NI PVPPGKEY+++GNG LRV+CVG++NLAFHM G +GE DF VQ T+VY++ I+FNL+SLH Q+ ++L++ GVHLF GRL+F + G
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIG 97
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.950e-23 Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 3
Query: 1032 LFNIMPVPPGKEYVQLGNGEFLRVQCVGTLNLAFHMGAPTGETDFRVQTTEVYLMSEINFNLFSLHHAQRKQNVVL 1259
+F++ P+P GK+++Q+GNG LRVQCV +N+AFHM P+GETDF VQ ++VY++ I FNLFSLHH QR+Q + L
Sbjct: 1 MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITL 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30521.8269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30521.8269.1 >prot_H-paniculata_contig30521.8269.1 ID=prot_H-paniculata_contig30521.8269.1|Name=mRNA_H-paniculata_contig30521.8269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp MAFANQGRDLERGREKWWTDSDASNMFTGNDQHLFNIMPVPPGKEYVQLGback to top mRNA from alignment at H-paniculata_contig30521:2..2349- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30521.8269.1 ID=mRNA_H-paniculata_contig30521.8269.1|Name=mRNA_H-paniculata_contig30521.8269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2348bp|location=Sequence derived from alignment at H-paniculata_contig30521:2..2349- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30521:2..2349- >mRNA_H-paniculata_contig30521.8269.1 ID=mRNA_H-paniculata_contig30521.8269.1|Name=mRNA_H-paniculata_contig30521.8269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig30521:2..2349- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |