mRNA_H-paniculata_contig3052.8268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3052.8268.1
Unique NamemRNA_H-paniculata_contig3052.8268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3052.8268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3052contigH-paniculata_contig3052:13311..13714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3052.8268.1prot_H-paniculata_contig3052.8268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3052 13330..13656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.24161-UTR-H-paniculata_contig3052:13310..133291622929937.24161-UTR-H-paniculata_contig3052:13310..13329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3052 13311..13329 +
1691481077.5840688-UTR-H-paniculata_contig3052:13310..133291691481077.5840688-UTR-H-paniculata_contig3052:13310..13329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3052 13311..13329 +
1622929937.2645197-UTR-H-paniculata_contig3052:13656..137141622929937.2645197-UTR-H-paniculata_contig3052:13656..13714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3052 13657..13714 +
1691481077.6138594-UTR-H-paniculata_contig3052:13656..137141691481077.6138594-UTR-H-paniculata_contig3052:13656..13714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3052 13657..13714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.2518525-CDS-H-paniculata_contig3052:13329..136561622929937.2518525-CDS-H-paniculata_contig3052:13329..13656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3052 13330..13656 +
1691481077.5964353-CDS-H-paniculata_contig3052:13329..136561691481077.5964353-CDS-H-paniculata_contig3052:13329..13656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3052 13330..13656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3052.8268.1

>prot_H-paniculata_contig3052.8268.1 ID=prot_H-paniculata_contig3052.8268.1|Name=mRNA_H-paniculata_contig3052.8268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MRFSSSLLQFINNIRGVFPREKVLQQSEAILWIATDYQSIANLGWMQNRT
FCNASHSSHFLCYPANVYYVHVSKTLHVPKHHRCFGELQLGEVTSGQNHY
PPFSDVQS*
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mRNA from alignment at H-paniculata_contig3052:13311..13714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3052.8268.1 ID=mRNA_H-paniculata_contig3052.8268.1|Name=mRNA_H-paniculata_contig3052.8268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=404bp|location=Sequence derived from alignment at H-paniculata_contig3052:13311..13714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTGCATTTACTCCTTTATGCGATTCTCTTCATCTCTCTTGCAATTCA
TTAACAACATCAGAGGGGTTTTCCCACGAGAAAAAGTACTTCAGCAAAGC
GAAGCCATACTATGGATTGCCACCGATTACCAAAGTATCGCAAATTTAGG
GTGGATGCAGAACAGAACATTTTGCAATGCCTCTCATTCGAGCCATTTTT
TGTGCTATCCTGCCAACGTTTATTACGTACACGTCAGTAAAACACTGCAC
GTGCCAAAACACCACAGATGTTTTGGAGAGCTTCAACTTGGAGAAGTTAC
CTCTGGCCAGAATCACTACCCTCCGTTTTCCGACGTACAAAGCTAATTCT
TGGCCGCCCCCCCCCACCCAAAACAGCATCAACGGCCCGATAAACCGCAA
GCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3052:13311..13714+

>mRNA_H-paniculata_contig3052.8268.1 ID=mRNA_H-paniculata_contig3052.8268.1|Name=mRNA_H-paniculata_contig3052.8268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig3052:13311..13714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATTCTCTTCATCTCTCTTGCAATTCATTAACAACATCAGAGGGGT
TTTCCCACGAGAAAAAGTACTTCAGCAAAGCGAAGCCATACTATGGATTG
CCACCGATTACCAAAGTATCGCAAATTTAGGGTGGATGCAGAACAGAACA
TTTTGCAATGCCTCTCATTCGAGCCATTTTTTGTGCTATCCTGCCAACGT
TTATTACGTACACGTCAGTAAAACACTGCACGTGCCAAAACACCACAGAT
GTTTTGGAGAGCTTCAACTTGGAGAAGTTACCTCTGGCCAGAATCACTAC
CCTCCGTTTTCCGACGTACAAAGCTAAATGCGATTCTCTTCATCTCTCTT
GCAATTCATTAACAACATCAGAGGGGTTTTCCCACGAGAAAAAGTACTTC
AGCAAAGCGAAGCCATACTATGGATTGCCACCGATTACCAAAGTATCGCA
AATTTAGGGTGGATGCAGAACAGAACATTTTGCAATGCCTCTCATTCGAG
CCATTTTTTGTGCTATCCTGCCAACGTTTATTACGTACACGTCAGTAAAA
CACTGCACGTGCCAAAACACCACAGATGTTTTGGAGAGCTTCAACTTGGA
GAAGTTACCTCTGGCCAGAATCACTACCCTCCGTTTTCCGACGTACAAAG
CTAA
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