mRNA_H-paniculata_contig3051.8266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3051.8266.1
Unique NamemRNA_H-paniculata_contig3051.8266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3051.8266.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.510e-43
Identity = 96/226 (42.48%), Postives = 135/226 (59.73%), Query Frame = 1 
Query:    1 RSTWCVLRDAGARAGMVRVLRPRPWGDKDDLLGGARVAVNSEVLKLMSQSTQHCMKGILEQLATVAWQRRGGLSRDILTGLEARMEDDRLPPPAVELRRGLVPRIPTVATRRTGAGGVFTSETVVWDKKQPEHDDPHECLKRDERRHRRECTEREARWATEVF-TEVSAEEENNRKRNRGKRSGRA------DDLLSLSKTGWLSREQMAANEFARRVCLETGVGL 657
            R  WC LRDAG RAGM RVL+ RPWG+  + L G + A  S+VLKLMS + Q+ +K +L++LA VA+QR+GGLS ++L+G+E+R+ D  +  P  ELR+ LVPR+P V                         D P   L+R E  HR+EC ERE RW  E+  T  +AEE   R   RG +          +D+ + +K+GWLS+EQ+A +EFARRV ++ G+G+
Sbjct:  250 RHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPRV------------------------QDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGV 451
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BLAST of mRNA_H-paniculata_contig3051.8266.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.430e-42
Identity = 94/226 (41.59%), Postives = 135/226 (59.73%), Query Frame = 1 
Query:    1 RSTWCVLRDAGARAGMVRVLRPRPWGDKDDLLGGARVAVNSEVLKLMSQSTQHCMKGILEQLATVAWQRRGGLSRDILTGLEARMEDDRLPPPAVELRRGLVPRIPTVATRRTGAGGVFTSETVVWDKKQPEHDDPHECLKRDERRHRRECTEREARWATEVF-TEVSAEEENNRKRNRGKRSGRA------DDLLSLSKTGWLSREQMAANEFARRVCLETGVGL 657
            R  WC LRDAG +AGM RVL+ RPWG+  + L G + A  S+VLKLMS + Q+ +K IL++LA VA+QR+GGLS ++L+G+E+R+ D  +  P  ELR+ LVPR+P+V                           P   L++ E  HR+EC ERE RW  E+  T  +AEE   R   RG +          +D+ + +K+GWLS+EQ+A +EFARRV ++ G+G+
Sbjct:  451 RHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPSVRNL------------------------PRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGV 652
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BLAST of mRNA_H-paniculata_contig3051.8266.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 6.310e-41
Identity = 107/247 (43.32%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:    1 RSTWCVLRDAGARAGMVRVLRPRPWGDKDDLLGGARVAVNSEVLKLMSQSTQHCMKGILEQLATVAWQRRGGLSRDILTGLEARMEDDRLPPPAVELRRGLVPRIPTVATRRTGAGGVFTSETVVWDKKQPEHDDPHECLKRD--ERRHRRECTEREARWATEVFTEVSAEEENNRKRNRGKRSGRA-------DDLLSLSKTGWLSREQMAANEFARRVCLETGVGLSPAASVEWKKRRKKSADVA 714
            RS WC LRDAGARAGM +VL+PRPWGD     GG + A NS+VL+         +K +L +L+ VA+QRRGGLS ++L GLE RMED R P  A+ L  GLVPR      RR   GG                            E  HRR C +REA W   V   ++A     + RN+ +    A       + L + S++GWLSREQ+AANEFARRV ++ GVGLS  AS EW+ R+K+ A+ A
Sbjct:  343 RSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEAY-------LKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALILYEGLVPRF-----RRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGLSMPASAEWR-RKKRMAEAA 576
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BLAST of mRNA_H-paniculata_contig3051.8266.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.190e-34
Identity = 79/168 (47.02%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    1 RSTWCVLRDAGARAGMVRVLRPRPWGDKDDLLGGARVAVNSEVLKLMSQSTQHCMKGILEQLATVAWQRRGGLSRDILTGLEARMEDDRLPPPAVELRRGLVPRIPTVATRRTGAGGVFTSETVVWDKKQPEHDDPHECLKRDERRHRRECTEREARWATEVFTEVSA 504
            RS WC LR+AGARAG+ +VL+PRPWGD     GG + A NS+VL+L+S +TQ  +K +L +L+ VA+QRRGGLS ++L GLE RMED R P  A+ L  GLVPR P      +G                   +DP E L+R+E  HRR C EREA W   V   ++A
Sbjct:  378 RSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRY---ESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAA 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3051.8266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCB6_ECTSI3.510e-4342.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTJ7_9PHAE6.430e-4241.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T0_9PHAE6.310e-4143.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX3_ECTSI1.190e-3447.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3051contigH-paniculata_contig3051:15860..18965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002810.1
Exons4
Model size714
Cds size714
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3051.8266.1prot_H-paniculata_contig3051.8266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3051 15860..18965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.1695378-CDS-H-paniculata_contig3051:15859..160601622929937.1695378-CDS-H-paniculata_contig3051:15859..16060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 15860..16060 -
1691481077.5448515-CDS-H-paniculata_contig3051:15859..160601691481077.5448515-CDS-H-paniculata_contig3051:15859..16060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 15860..16060 -
1622929937.1864312-CDS-H-paniculata_contig3051:17304..175791622929937.1864312-CDS-H-paniculata_contig3051:17304..17579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 17305..17579 -
1691481077.5571651-CDS-H-paniculata_contig3051:17304..175791691481077.5571651-CDS-H-paniculata_contig3051:17304..17579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 17305..17579 -
1622929937.198332-CDS-H-paniculata_contig3051:17925..180281622929937.198332-CDS-H-paniculata_contig3051:17925..18028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 17926..18028 -
1691481077.565324-CDS-H-paniculata_contig3051:17925..180281691481077.565324-CDS-H-paniculata_contig3051:17925..18028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 17926..18028 -
1622929937.209392-CDS-H-paniculata_contig3051:18830..189651622929937.209392-CDS-H-paniculata_contig3051:18830..18965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 18831..18965 -
1691481077.5736678-CDS-H-paniculata_contig3051:18830..189651691481077.5736678-CDS-H-paniculata_contig3051:18830..18965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3051 18831..18965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3051.8266.1

>prot_H-paniculata_contig3051.8266.1 ID=prot_H-paniculata_contig3051.8266.1|Name=mRNA_H-paniculata_contig3051.8266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
RSTWCVLRDAGARAGMVRVLRPRPWGDKDDLLGGARVAVNSEVLKLMSQS
TQHCMKGILEQLATVAWQRRGGLSRDILTGLEARMEDDRLPPPAVELRRG
LVPRIPTVATRRTGAGGVFTSETVVWDKKQPEHDDPHECLKRDERRHRRE
CTEREARWATEVFTEVSAEEENNRKRNRGKRSGRADDLLSLSKTGWLSRE
QMAANEFARRVCLETGVGLSPAASVEWKKRRKKSADVA
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mRNA from alignment at H-paniculata_contig3051:15860..18965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3051.8266.1 ID=mRNA_H-paniculata_contig3051.8266.1|Name=mRNA_H-paniculata_contig3051.8266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3106bp|location=Sequence derived from alignment at H-paniculata_contig3051:15860..18965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCGACTTGGTGCGTCTTGCGAGACGCCGGGGCGAGGGCAGGGATGGT
AAGGGTGCTGCGACCGCGGCCGTGGGGCGACAAAGATGACCTGCTGGGCG
GTGCGAGAGTGGCGGTGAATAGCGAGGTGCTTAAGGTACGTCCCGTACAA
TACAGTACAATACGGCACGGCGTGGTAGCTGCAAAAACAGGCCCGAGGAT
AAACGCTACCTGGCTGGGCTCATGCCGGTTGAGCGCACTTTCGGATTGTG
CCTGCGGATATCATTTATTATATATATAGTGTTGATGTCAGAGGGACGTA
AATGAAGGGGGCGCGGAGAGGGGGGGTCAGGTTGGAGGGCTCATTCGATC
AATCTGTGTTCCTTATTTTTTTGTTGCCGCAGGCTTTGCTCTCTGGTCTG
CTGTACTGCATAGCTTGAGTCCTGGTGTAGGCATAGTATGTAGCGTTGAG
TAGCGATAGGCTCGCCACATAGCCCGCGACAAATATCTTCCCTCCGTGGA
GATTCAAGTAAACGTGCGATTTGCAAGGCTTTTACGAAACAAAATCTCAA
ACGACGTGCCCCACTTGCAAATTGACTGGTTTCGGTTAGGGTTCGGATTT
TGGGTTAGCGTTAGGGTGAGGTTTCATGGGACATGGTTGCGAAGATCTCG
GTCCGGAAAATATCAATCAATACTTGCCTTGGCCCCCGTGTATAGGTGCG
TACGCGTTCGGGTTGACTTCGGCTTACAGAAGTACTTTGCCTTGGTCGGA
AAAAATTAAGCGGGCAAGAGTAACAATTGAAAGCGTAGTTTCGTCTTTGT
GATTCCAAACACTCATTTTGATCTGGACTTGTCAAAATGTTGGAGGCGTA
GGTCGTCGCGATGAAATACACATTTTCGACCCCCCATGTCCCCCAATAAC
CCTTATTTTGTGTTGTCTCTCTTTGGTGGTTGGAAAGCTAATGTCACAGT
CCACCCAGCACTGTATGAAAGGAATCTTGGAGCAACTCGCGACGGTTGCT
TGGCAACGCCGAGGAGGTCTGTCGAGGGATATATTAACAGGTCAGGAAAT
ACACGTGTGAATCCGAGATAGCGGGTAGATACTGTGGCAGGGCAAGGTAA
CCACTGTGTAAATAGGAGACGGGAATGACAAAACAAAATGTAGATAGATA
GGCAGGTAGCTAGATAGATACATCCATAAGGAGCAGAATACGAACATAGA
TACGAAGCTTACATGTATAAGATACACAAGGGGAAATGGAGACATCGATA
GACACCAACTTCAAATGTTTCCTTCCAAGGTATCTTCCCCCCCGCGCCTC
CCGTCCACACCATTTGGCCCCGGCACACGCGTCCGCCTCAATTTCTCAAA
TATATATATCCCTTCTACTCTCTTGAATTTCTGTAGGACTCGAAGCGCGG
ATGGAGGATGACCGATTGCCGCCTCCGGCAGTGGAACTGCGTCGTGGATT
GGTGCCCCGGATCCCCACGGTAGCCACAAGGAGGACGGGAGCGGGGGGGG
TGTTCACGAGTGAGACTGTTGTTTGGGACAAGAAGCAGCCGGAGCACGAC
GACCCTCACGAGTGCTTGAAGAGGGACGAACGGCGACACCGGCGCGAGTG
TACGGAGCGCGAGGCCCGGTGGGCAACGGAAGTGTTCACCGAGGTTTCGG
CTGAGGAAGAGGTGAGAAAAGGATCGCCGCCATCGCTCGACAGCGATGAT
GATTACCGCGCTGCCCCCGTCGTCGCCTCCGCCTCTGCCGCCAACGGCGA
CGATGAGGATGCCTTATTGCTTCGTTTTTTGTCTTCTTCCGGTAGTGGTG
GTGGTGGTGATGGTGGTGGTGGTGGTGGTGGTGGTGCTATAATACAAATA
CTGAGGCTTTGATCCCTGTTTCCCTTCTCCTTATACAGCAACCGCTAGAC
CACCACCGCCACCACCACCATCACCACCACCACCACCACCACCACCACCA
CCACCACCACCACCACTACCAACGCGGCCGCGACAAGTATTTTGGATCTT
CAGCAGCACTGCGAGGAACTATCGCAAGCATAAGCATTACGATACAAATA
ACCATGAATAATTTCGTTCCCAAAAGGCATTCAACCATCGATATGCATAG
GCATATTTCGAATAAAATAAAGTGTAAAAAAAACGCCGCAAAAGTTCAAC
GTCTGACTCGTGCAGCATTTTCATTCTCGAGTAAACTACTTATCTAGAGC
TAACTTTGATATGTTGTTTTCAGCCGGTCATTCAAATATTTGAAACTTCG
CGTGTGTCTTTACCTGTTCTGGTGTCGTACCTGTTGTATTGTAGGGGGGT
AGACGTCGACTTGCAGCTTGTTTGGCGCTTGTGTGTGTTTGTGTGTGTTT
GTTTGCGTATGTTTGTGCATACGTGGAACAGGTAAAACGCGTTGCGAAGT
GCTTGAAAACAATACTGCGAAGTTAACGAGCTTGCAACGGTGCCCGAGCC
AAACGTGAACTTTTGAGGTGTTTTTGGGTTTCATGTAATACACACATACA
CACACACATAGACACACACACACACACACACACACATAGACACACACACA
CACACATACATATACTTATACGCGATTGAACATTTATTATTCGTGACTCT
CAGTTGCTGCCTGTGTATGTGTAAATGATTACCACGTGTGCTTTCCCTTT
GCACCCTTCGCACCTCCCTCCCCTTGTCCACGCTGCATCTACCCTATATG
TTTATGCATCCTATGTTCACTACTGTTTAAAAAATATTGATATGCCTGAA
TATATCACAGCTGCAACTACGATTGTCATTTAAAGCAGTCACATAACTCC
TTTCCCCCCTTCAAACACACAGTGCTTCAAATGAAAGACCTAACGCTACA
GCCCTCATACCCCGGTCTCGTCTTTTTTCGTACACCATACCCACGGCTGC
AATAGAACAATCGTAAACGCAACAGAGGAAAAAGATCCGGACGCGCGGAC
GATCTGCTGTCCTTGTCCAAGACCGGCTGGCTTTCGCGGGAGCAAATGGC
CGCCAACGAGTTCGCCCGCAGGGTGTGCCTGGAGACGGGGGTGGGGCTGT
CGCCAGCGGCCTCCGTGGAGTGGAAAAAACGAAGAAAGAAGTCGGCAGAT
GTTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3051:15860..18965-

>mRNA_H-paniculata_contig3051.8266.1 ID=mRNA_H-paniculata_contig3051.8266.1|Name=mRNA_H-paniculata_contig3051.8266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig3051:15860..18965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCGACTTGGTGCGTCTTGCGAGACGCCGGGGCGAGGGCAGGGATGGT
AAGGGTGCTGCGACCGCGGCCGTGGGGCGACAAAGATGACCTGCTGGGCG
GTGCGAGAGTGGCGGTGAATAGCGAGGTGCTTAAGAGGTCGACTTGGTGC
GTCTTGCGAGACGCCGGGGCGAGGGCAGGGATGGTAAGGGTGCTGCGACC
GCGGCCGTGGGGCGACAAAGATGACCTGCTGGGCGGTGCGAGAGTGGCGG
TGAATAGCGAGGTGCTTAAGCTAATGTCACAGTCCACCCAGCACTGTATG
AAAGGAATCTTGGAGCAACTCGCGACGGTTGCTTGGCAACGCCGAGGAGG
TCTGTCGAGGGATATATTAACAGCTAATGTCACAGTCCACCCAGCACTGT
ATGAAAGGAATCTTGGAGCAACTCGCGACGGTTGCTTGGCAACGCCGAGG
AGGTCTGTCGAGGGATATATTAACAGGACTCGAAGCGCGGATGGAGGATG
ACCGATTGCCGCCTCCGGCAGTGGAACTGCGTCGTGGATTGGTGCCCCGG
ATCCCCACGGTAGCCACAAGGAGGACGGGAGCGGGGGGGGTGTTCACGAG
TGAGACTGTTGTTTGGGACAAGAAGCAGCCGGAGCACGACGACCCTCACG
AGTGCTTGAAGAGGGACGAACGGCGACACCGGCGCGAGTGTACGGAGCGC
GAGGCCCGGTGGGCAACGGAAGTGTTCACCGAGGTTTCGGCTGAGGAAGA
GGACTCGAAGCGCGGATGGAGGATGACCGATTGCCGCCTCCGGCAGTGGA
ACTGCGTCGTGGATTGGTGCCCCGGATCCCCACGGTAGCCACAAGGAGGA
CGGGAGCGGGGGGGGTGTTCACGAGTGAGACTGTTGTTTGGGACAAGAAG
CAGCCGGAGCACGACGACCCTCACGAGTGCTTGAAGAGGGACGAACGGCG
ACACCGGCGCGAGTGTACGGAGCGCGAGGCCCGGTGGGCAACGGAAGTGT
TCACCGAGGTTTCGGCTGAGGAAGAGAACAATCGTAAACGCAACAGAGGA
AAAAGATCCGGACGCGCGGACGATCTGCTGTCCTTGTCCAAGACCGGCTG
GCTTTCGCGGGAGCAAATGGCCGCCAACGAGTTCGCCCGCAGGGTGTGCC
TGGAGACGGGGGTGGGGCTGTCGCCAGCGGCCTCCGTGGAGTGGAAAAAA
CGAAGAAAGAAGTCGGCAGATGTTGCGAACAATCGTAAACGCAACAGAGG
AAAAAGATCCGGACGCGCGGACGATCTGCTGTCCTTGTCCAAGACCGGCT
GGCTTTCGCGGGAGCAAATGGCCGCCAACGAGTTCGCCCGCAGGGTGTGC
CTGGAGACGGGGGTGGGGCTGTCGCCAGCGGCCTCCGTGGAGTGGAAAAA
ACGAAGAAAGAAGTCGGCAGATGTTGCG
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