mRNA_H-paniculata_contig305.8262.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig305.8262.1 vs. uniprot
Match: D7FJ19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ19_ECTSI) HSP 1 Score: 303 bits (775), Expect = 1.950e-84 Identity = 355/1027 (34.57%), Postives = 500/1027 (48.69%), Query Frame = 1
Query: 7 ENTELKNRVKRRTAALDAMRKAYIVDVARLKKNLCDK----------------------------------------------------IVHLNHGLVKKLEAQISNLQRELEEQGQRLGTSQATAELLHLKETAMDVQLSQLKGAMVKEISALKTKLEGSGPEVVAKLREEREKVELRVRLANTRVNELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGAMMERDAVDLTQSLAEMRKTAQEQEETHCQTIKKARSIASFSPQRAQINEAAVRDELAVLREERLEEYDDNRNDDNHNRDYNKYQVP-------ATFIAGSNISSVSL-----TDKMQLLELRETLQCKASAVIREDILSGAQSRREEQVQAEATELRYLLSEARRKAREADKDKRQLLEMLKLAKERPCDAERAVWNAQLRGWG------SHKIDEYGPSHEDGCTGIHAQEELGEGAGSNTGELPVGKDDNLDAPDDGGTPATKELQSLAADCRKLRAENFNGKTIQASYATFQSETRQLEEQIKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLDRLESEIN--------------ERSALNIVLEAGITATKVALGASGEAARKVAALAERRAHWAESEGLRAEE--------------EFSRRILAQEANAKQIASLTSDLSAAQTELVRRRREAKEHAEEMKGFRAVVEQRERLEVEISRQHERLEEVEKQASTDVAIIEELKLQIVLMQSMRREVLVLEDKVDMKQKELAVTQSSLKIMRDKNEVYQVATADHNARVQESCAEKLALDATCKQRGAQLSNMEEAIRQVKLSLKALEEEHARVLAAKEALDELTLKQNEALLDNHTELQRYVALKVEYEAEVLQHGRVSRRLETKENEARSLIAKLYVETSARAAAEAATEKAEHVRASAVKKRKAAEREMDIHRAKMERVNEMKTKAESKLNALIEAENVRLATTKAVATEV 2793
EN EL+ VKRRT ALD +R+AYIVDV LK++L D+ IVH + V KL Q+ ++ EL E G+ LG S+A E K + S++ +++EI LK KL +GPEVVAK+ EER+K E RVR AN V++LE A + D A++ K ++ EE ++I K R + A+ +EA +R+ELA LREE L+ + D ++R + P +F + V +DKM +LEL E L+ K++A + E+ILSGA +RREEQ E +L+ LL++A + + +D ++LL+M A+ R +AE + +E+ P E A G+ A +T ++ D+ D D G A + L DCR+L +L+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E D+++ E++ E +N VLEAG+ ATK +L A + A AER A A E SRR L+ A++IA L +L+ EL RRR EAKEHAE+MK FR VV +R RLE E++ Q + + ++ ++ + D +IEELKLQ+VL+ MR+EVL LEDK++ Q EL+ T++SL+ + +V Q+AT +H+ RV + +++L LD+ CKQR AQ+SNMEEA+R+++ + AL++EH +L KE L E LKQ + LLDN EL++Y ALKVE+ EV QHG+V+R L+ E R + +L A A + ++AE VRASAV++RKAA E R MER E +L+ L+EA RLAT AVATEV
Sbjct: 11 ENAELRRHVKRRTQALDTIRRAYIVDVEHLKRDLRDQVEGKSAAGSENSDDVALGGIPSLDFRPVLELFAPTGDTLQISPCEECGGTMEIVHYDEKEVVKLRRQLETIREELMESGKALGNSKAIVETYRAKAETASSEFSEIHNMLLREIKMLKEKLANAGPEVVAKISEERDKAESRVRSANRTVSDLESVVVELQAQVQRDADDNLKVEEMEHHLLEASKETKAMAFERDTQASAADELRATVASLNTDLQQANDKNAKLLKAFEDHEENSKRSIAKLRKLLDS----AKTSEAEMREELAALREENLQNMLTSEGGDGNSRSHEHLDRPQDAASADGSFAGFNGEPEVEAPPPEKSDKMLVLELTEGLRRKSTAAVGEEILSGAYARREEQAALEIAQLKALLTKADAQVLKGKRDNKKLLKMWNGARARLQEAEGTDRSGDSSNLSLPITVSKVPTEEHAPPEE--VKESAANLRSGKRARRSTRKVAADTVDSSDEDDTEGVMAVA-ISYLEEDCRRLGVAKG-----------------ELQEYCNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSKATLAVAEHSMALHDAQESTDKVKQELDQEKTATAQLGLQLKEMGTVNGVLEAGLVATKHSLEIMTTAKGEAEAAAERNASQAXXXXXXXXXXXXXXXXXXXXXXXESSRRFLSDVVAAERIAVLGVELNKCVNELERRRLEAKEHAEQMKEFRQVVAERARLEEEVASQRDTILDMRQRTAKDQTMIEELKLQVVLLDGMRKEVLCLEDKLERLQVELSATKTSLEASNQQRKV-QIATVEHHDRVDGARSDQLLLDSLCKQRAAQISNMEEAMRRLEATRAALQKEHDELLVEKEELHETLLKQKDVLLDNSKELRKYSALKVEHATEVKQHGKVARCLQEAEGNIRRVNIRLERAIGDAAVAASTAKEAESVRASAVEERKAAVVEAQTIRDTMEREKEQAQAVGKQLHDLVEANVTRLATNTAVATEV 1012
BLAST of mRNA_H-paniculata_contig305.8262.1 vs. uniprot
Match: A0A6H5KG14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG14_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.120e-29 Identity = 155/509 (30.45%), Postives = 220/509 (43.22%), Query Frame = 1
Query: 1645 RLESEINERSALNIVLEAGITATKVALGASGEAARKVAALAERRAHWAESEGLRAEE--------------EFSRRILAQEANAK------------------------QIASLTSDLSAAQTELVRRRREAKEHAEEMKGFRAVVEQRERLEVEISRQHERLEEVEKQASTDVAIIEELKLQIVLMQSMRREVLVLEDKVDMKQKELAVTQSSLKIMRDKNEV--------------------------------------------------------------------------------------------------------------------------YQVATADHNARVQESCAEKLALDATCKQRGAQLSNMEEAIRQVKLSLKALEEEHARVLAAKEALDELTLKQNEALLDNHTELQRYVALKVEYEAEVLQHGRVSRRLETKENEARSLIAKLYVETSARAAAEAATEKAEHVRASAVKKRKAAEREMDIHRAKME 2691
+L ++ E +N VLEAG+ ATK +L A + A AER A A+ L E SRR L+ A+ QIA L +LS EL RRR EAKEHAE+MK F VV +R RLE E++ Q + + ++ ++ + D +IEELKLQ+VL+ MR+EVL LEDK++ Q EL+ T++SL+ + +V Q+AT +H RV + ++++ LD+ CKQR AQ+SNMEEA+R+++ + AL++EH +L KE L E LKQN+ L DN EL++Y ALKVE+ AEV QH +V+R L+ E R + +L A A + ++AE VRASAV++RKAA E R ME
Sbjct: 528 QLGLQLKEMGTVNGVLEAGLVATKHSLEIMTTAKGEAEAAAERNASQAKHNALXXXXXXXXXXXXXXXXXXESSRRFLSDVVAAERVDFIRAFLVFCTALSPGAVFVDAQIAFLGVELSKCVNELKRRRLEAKEHAEQMKEFWQVVAERARLEEEVASQRDTILDMRQRTAKDQTMIEELKLQVVLLDGMRKEVLSLEDKLERLQVELSATRTSLEASNQQRKVTEQDLRANIKLNRSLWAALTSSVFLLDDWCAGPLLAWRERDPAAEPPAMPKPPLEARAVEDIVKLRRQSPGGADATRSSLTSPPLPTEEAGVSAGAPATTMSIQDRLEGQRPRAVAAWLRFRVQIATVEHQDRVDSARSDQVLLDSVCKQRAAQISNMEEAMRRLEATRAALQKEHDELLVEKEELHETVLKQNDVLFDNSKELRKYSALKVEHAAEVRQHRKVARCLQEAEGNIRRVNIRLERAIGDAAVAASLAKEAESVRASAVEERKAAVVEAQTIRDTME 1036 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig305.8262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig305.8262.1 >prot_H-paniculata_contig305.8262.1 ID=prot_H-paniculata_contig305.8262.1|Name=mRNA_H-paniculata_contig305.8262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=931bp MEENTELKNRVKRRTAALDAMRKAYIVDVARLKKNLCDKIVHLNHGLVKKback to top mRNA from alignment at H-paniculata_contig305:27095..39642- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig305.8262.1 ID=mRNA_H-paniculata_contig305.8262.1|Name=mRNA_H-paniculata_contig305.8262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12548bp|location=Sequence derived from alignment at H-paniculata_contig305:27095..39642- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig305:27095..39642- >mRNA_H-paniculata_contig305.8262.1 ID=mRNA_H-paniculata_contig305.8262.1|Name=mRNA_H-paniculata_contig305.8262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5586bp|location=Sequence derived from alignment at H-paniculata_contig305:27095..39642- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |