mRNA_H-paniculata_contig1129.826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1129.826.1
Unique NamemRNA_H-paniculata_contig1129.826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: D8LNT0_ECTSI (Ribosomal protein L15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT0_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 1.010e-138
Identity = 202/205 (98.54%), Postives = 203/205 (99.02%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRV KVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYW+NQDATFKYYEVITVDPSH AIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVCKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWVNQDATFKYYEVITVDPSHMAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A835ZF84_9STRA (Ribosomal protein L15 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF84_9STRA)

HSP 1 Score: 341 bits (875), Expect = 2.850e-113
Identity = 167/205 (81.46%), Postives = 183/205 (89.27%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKY+EELWRKKQSDVLRF+LRVRAWEYRQLP+V K + PTRTDKAHRLGYKAKQGY++ RVAVRRGGRKRPN KGIVYGKPK+ GI ++K VR+LRSVAEER GAK  NMRVLNSYW+NQDAT+KYYEVI VDP H AIRND RI WI KPVMKHRECRGLTSAGR  RGLRK GHRANN+IG S RAAW++RNTLSL+RYR
Sbjct:    1 MGAYKYMEELWRKKQSDVLRFLLRVRAWEYRQLPKVYKCTKPTRTDKAHRLGYKAKQGYSVFRVAVRRGGRKRPNYKGIVYGKPKNQGITQLKFVRSLRSVAEERAGAKCANMRVLNSYWVNQDATYKYYEVILVDPQHKAIRNDSRINWIAKPVMKHRECRGLTSAGRTSRGLRKSGHRANNIIGGSHRAAWRKRNTLSLRRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A7S1UIX1_9STRA (Ribosomal protein L15 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIX1_9STRA)

HSP 1 Score: 337 bits (863), Expect = 1.860e-111
Identity = 164/202 (81.19%), Postives = 181/202 (89.60%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLK 606
            MGAYKYLEELWRKKQSDVLRF+LRVRAWEYRQLPRV+ +  PTRT+KAHRLGYKAKQGYT+VRVAVRRGGRKRPN KGIV+GKPKHHGIN +K  RNL+SVAEER G K  N+RVLNSYW+NQDAT+KYYEVI VDPSHNAIRNDPRI WI  P MKHRE RGLTSAGR+ RG+R+KGH+ANN+IG S +AAWKRRNTL LK
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQLPRVMSLHRPTRTEKAHRLGYKAKQGYTIVRVAVRRGGRKRPNNKGIVFGKPKHHGINHLKFARNLQSVAEERAGRKAANLRVLNSYWVNQDATYKYYEVIMVDPSHNAIRNDPRINWIVAPTMKHRENRGLTSAGRKARGMRQKGHKANNIIGGSWKAAWKRRNTLKLK 202
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A7S2UVW3_9STRA (Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVW3_9STRA)

HSP 1 Score: 335 bits (859), Expect = 7.490e-111
Identity = 164/205 (80.00%), Postives = 179/205 (87.32%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEELWRKKQSDVLRF+LRVRAWEYRQLP+V K + PTRTDKAHRLGYKAKQGY + RVAVRRGGRKRPN KGIVYGKPKH GIN++K VRNL+SVAE+R G +  N+RVLNSYW+NQDAT+KYYEVI VDP H  IRNDPRI W+ K V KHRECRGLTSAGR+HRGLRKKGHRA+ L GSS R  W RRNTLSLKRYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQLPKVYKCTKPTRTDKAHRLGYKAKQGYVVYRVAVRRGGRKRPNPKGIVYGKPKHQGINQLKFVRNLQSVAEQRAGKRCANLRVLNSYWVNQDATYKYYEVIMVDPQHKVIRNDPRINWLVKAVHKHRECRGLTSAGRKHRGLRKKGHRAHKLQGSSTRGNWLRRNTLSLKRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: F0Y8J7_AURAN (Ribosomal protein L15 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8J7_AURAN)

HSP 1 Score: 323 bits (829), Expect = 2.560e-106
Identity = 154/205 (75.12%), Postives = 178/205 (86.83%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEE+W++KQ DVLR+++R+RAW+YRQ  +V + + PTR DKAH+LGYKAK+GY + R AVRRGGRKRPN KGIVYGKPKH GIN++K  RNL+SVAEERVG K  N+RVLNSYW+NQDAT+KYYEVI VDPSH  IRNDPRI WI  P  KHRECRGLTSAGR+ RGLRK+GHRANN+IGSSRRAAWKRRN LSL+RYR
Sbjct:    1 MGAYKYLEEMWKRKQCDVLRYLMRIRAWQYRQQTKVCRCTRPTRHDKAHKLGYKAKEGYVIYRSAVRRGGRKRPNGKGIVYGKPKHQGINQLKFARNLQSVAEERVGKKCGNLRVLNSYWVNQDATYKYYEVIAVDPSHAVIRNDPRINWIVNPTHKHRECRGLTSAGRKSRGLRKQGHRANNIIGSSRRAAWKRRNNLSLRRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A8J2X0T5_9STRA (Ribosomal protein L15 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0T5_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.660e-104
Identity = 154/205 (75.12%), Postives = 175/205 (85.37%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEELW+KKQ DVLR+++R+RAWEYRQ  +V +V+ PTR DKAH+LGYKAK+GY + R AVRRG RKRP  +G+VYGKPKH GIN+IK  RNL++VAEERVG K  N+RVLNSYW+NQDAT+KYYEVI VDPSH  IRNDPRI WI     KHRECRGLTSAGR+ RGLRKKGHRANNLIGSSRR AWKRRN LSL+RYR
Sbjct:    1 MGAYKYLEELWKKKQCDVLRYLMRIRAWEYRQQTKVCRVTRPTRHDKAHKLGYKAKEGYAIFRSAVRRGSRKRPTHRGVVYGKPKHQGINQIKFARNLQAVAEERVGKKAANLRVLNSYWVNQDATYKYYEVICVDPSHQVIRNDPRINWICGATHKHRECRGLTSAGRKSRGLRKKGHRANNLIGSSRRGAWKRRNNLSLRRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: F0WIA3_9STRA (Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 RepID=F0WIA3_9STRA)

HSP 1 Score: 318 bits (815), Expect = 3.450e-104
Identity = 156/205 (76.10%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEELW++KQSDVLRF++RVRAWEYRQ P + + + PTR DKA RLGYKAKQGY +VR AVRRGGRKRPN+KGIVYGKPKHHGIN++K  RNLRSVAEER GA+FTN+RVLNSYWINQDAT+KY+EVI VD SH  IR DPRI WI  P  K RE RGLTSAGRQ RGLRK+GHRAN + G S R  WKRRNTLSL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLIRVRAWEYRQQPVIYRTTRPTRIDKARRLGYKAKQGYVIVRAAVRRGGRKRPNSKGIVYGKPKHHGINQLKFARNLRSVAEERAGARFTNLRVLNSYWINQDATYKYFEVIMVDHSHKVIRQDPRINWIVNPTHKRREKRGLTSAGRQGRGLRKRGHRANKIQGGSSRHNWKRRNTLSLRRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A2D4BT83_PYTIN (Ribosomal protein L15 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT83_PYTIN)

HSP 1 Score: 316 bits (809), Expect = 2.680e-103
Identity = 155/205 (75.61%), Postives = 173/205 (84.39%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKYLEELW++KQSD LRF+LRVRAWEYRQLP V +++ PTR DKA RLGYKAKQGY +VR AVRRGGRKR NAKGIVYGKP H GIN++KA RNLRS+AEER G KF N+RVLNSYW+NQDAT+KY+E+I VD SH AIR D RI WI  PV KHRE RGLTSAGRQ RGLRK+GHRAN +IG S R  WKRRNT SL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDALRFLLRVRAWEYRQLPVVHRLTQPTRLDKARRLGYKAKQGYVVVRAAVRRGGRKRQNAKGIVYGKPSHQGINQLKAERNLRSIAEERAGRKFANLRVLNSYWVNQDATYKYFEIIMVDYSHKAIRRDARINWIVNPVHKHRELRGLTSAGRQGRGLRKRGHRANKIIGGSHRGNWKRRNTTSLRRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: A0A6U0QFC2_9STRA (Ribosomal protein L15 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0QFC2_9STRA)

HSP 1 Score: 315 bits (808), Expect = 3.800e-103
Identity = 152/205 (74.15%), Postives = 173/205 (84.39%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYKY+EELWR KQSD LRF+LRVRAWEYRQ P++ +V+ PTRTDKAHRLGYKAKQGY +VR+ VRRGGRKR N +G+VYGKPKH GIN +K  RNL+SVAEE+VG KF N+RVLNSYWINQDA +KYYE+I VDPSH  IRNDPRI WI   V KHRECRGLTSAGR+ RG R++GHRAN  IG S RAAW +RNT+ LKRYR
Sbjct:    1 MGAYKYMEELWRHKQSDALRFLLRVRAWEYRQRPKMTRVNRPTRTDKAHRLGYKAKQGYVVVRIGVRRGGRKRQNHRGMVYGKPKHQGINHLKFERNLQSVAEEKVGRKFANLRVLNSYWINQDAVYKYYEIILVDPSHTKIRNDPRINWIVGAVHKHRECRGLTSAGRKSRGFRRQGHRANGRIGGSYRAAWLKRNTMRLKRYR 205
[Close]
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Match: W7U484_9STRA (Ribosomal protein L15 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U484_9STRA)

HSP 1 Score: 315 bits (807), Expect = 5.380e-103
Identity = 151/205 (73.66%), Postives = 176/205 (85.85%), Query Frame = 1 
Query:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 615
            MGAYK+LEELWRKKQ+D+LRF+LRVRAWEYRQLP++ +++ PTRTDKAHRLGYKAKQG+ + RVAVRRGGRKRPN KGIVYGKPK+ GIN++K VRNL+S AEER G K   +RVLNSYW+NQDAT+KYYEVI VDP H AIR D R+ WI  P  KHRE RGLTS+GR  RGLRK+GHRA+N+IGSS   +WKRRNT+SLKRYR
Sbjct:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1129.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT0_ECTSI1.010e-13898.54Ribosomal protein L15 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZF84_9STRA2.850e-11381.46Ribosomal protein L15 n=2 Tax=Tribonema minus TaxI... [more]
A0A7S1UIX1_9STRA1.860e-11181.19Ribosomal protein L15 n=1 Tax=Phaeomonas parva Tax... [more]
A0A7S2UVW3_9STRA7.490e-11180.00Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica ... [more]
F0Y8J7_AURAN2.560e-10675.12Ribosomal protein L15 n=1 Tax=Aureococcus anophage... [more]
A0A8J2X0T5_9STRA1.660e-10475.12Ribosomal protein L15 n=1 Tax=Pelagomonas calceola... [more]
F0WIA3_9STRA3.450e-10476.10Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 R... [more]
A0A2D4BT83_PYTIN2.680e-10375.61Ribosomal protein L15 n=1 Tax=Pythium insidiosum T... [more]
A0A6U0QFC2_9STRA3.800e-10374.15Ribosomal protein L15 n=1 Tax=Eucampia antarctica ... [more]
W7U484_9STRA5.380e-10373.66Ribosomal protein L15 n=2 Tax=Monodopsidaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1129contigH-paniculata_contig1129:22730..28010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.6
Seed ortholog evalue1.4e-110
Seed eggNOG ortholog2880.D8LNT0
Preferred nameRPL15
KEGG koko:K02877,ko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016236,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0031672,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042493,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1632@1,KOG1678@2759
Ec32 ortholog descriptionRibosomal protein L15e
Ec32 orthologEc-08_005940.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko02000,ko03011
Exons4
Model size1442
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1129.826.1prot_H-paniculata_contig1129.826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1129 22730..27186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.838522-CDS-H-paniculata_contig1129:22729..229001622928835.838522-CDS-H-paniculata_contig1129:22729..22900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 22730..22900 +
1691480638.6295812-CDS-H-paniculata_contig1129:22729..229001691480638.6295812-CDS-H-paniculata_contig1129:22729..22900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 22730..22900 +
1622928835.855937-CDS-H-paniculata_contig1129:24770..248431622928835.855937-CDS-H-paniculata_contig1129:24770..24843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 24771..24843 +
1691480638.640218-CDS-H-paniculata_contig1129:24770..248431691480638.640218-CDS-H-paniculata_contig1129:24770..24843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 24771..24843 +
1622928835.869854-CDS-H-paniculata_contig1129:26496..266451622928835.869854-CDS-H-paniculata_contig1129:26496..26645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 26497..26645 +
1691480638.648062-CDS-H-paniculata_contig1129:26496..266451691480638.648062-CDS-H-paniculata_contig1129:26496..26645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 26497..26645 +
1622928835.8906906-CDS-H-paniculata_contig1129:26961..271861622928835.8906906-CDS-H-paniculata_contig1129:26961..27186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 26962..27186 +
1691480638.655634-CDS-H-paniculata_contig1129:26961..271861691480638.655634-CDS-H-paniculata_contig1129:26961..27186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1129 26962..27186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.9047854-UTR-H-paniculata_contig1129:27186..280101622928835.9047854-UTR-H-paniculata_contig1129:27186..28010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1129 27187..28010 +
1691480638.6630106-UTR-H-paniculata_contig1129:27186..280101691480638.6630106-UTR-H-paniculata_contig1129:27186..28010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1129 27187..28010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1129.826.1

>prot_H-paniculata_contig1129.826.1 ID=prot_H-paniculata_contig1129.826.1|Name=mRNA_H-paniculata_contig1129.826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVVKVSHPTRTDKAHR
LGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRS
VAEERVGAKFTNMRVLNSYWINQDATFKYYEVITVDPSHNAIRNDPRIQW
ITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLS
LKRYR*
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mRNA from alignment at H-paniculata_contig1129:22730..28010+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1129.826.1 ID=mRNA_H-paniculata_contig1129.826.1|Name=mRNA_H-paniculata_contig1129.826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5281bp|location=Sequence derived from alignment at H-paniculata_contig1129:22730..28010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCCTACAAGTACCTGGAGGAGCTCTGGCGGAAGAAGCAGAGCGA
TGTACTTCGCTTCGTACTGCGTGTGCGCGCGTGGGAGTACCGCCAACTCC
CCCGCGTGGTGAAGGTGTCTCACCCCACCAGGACCGACAAGGCCCACCGG
CTAGGCTACAAGGCAAAGCAGGTGGGTGGCAGTGGATGATGAGTTATAAT
ATCGTTATTTTAATGGTAGGCTATCCTACTCCCCCTATCACTGTGGCGTG
TCGGAGTGTCTTGTCGTGCAGGTATGTATCTCCCGAACCATCCGTTGTTG
TGTTTCTTGTCTGGAGTACTTGTTTGTATCGATTGGAGGAAGGCACTTCG
TGGTCATCAAGTTTTTCACGCTTGTTGTGCGGTACGATATTGCTGGTTAG
CACACACCTAGTTAGCGATGCAATATGGACTGGGTTGAATTCGACATGGA
CTCCCGAGATGCGTTGCTTAATATTGTGCTAAATGTTGTGGGAATGTATC
TTGCTCTAGCGTGTGGTCTGGCGTTGTCGCCTGTAACCGCGGGTGTAAAG
TGAGCACGAAACCGAATATTGGTGATGTAAAGCCTACTGTGTGTCCGTCT
TTGTTATTTGGGTAACTACAGTGGCGCGTCCATGACAGTATGGACGATAA
TATCATGCCGTACAGACAGTGCCTCCTACCTTGGAGTAGGAGTCTTCACC
GCGTATAGACTAAGCCCGTCTTGCCATATGTTGAATGCATGGCTGAAATC
ACGAGAGGGGACACTCTGTATTTCAGTAGCGTAAATATCGCCTTCGTGCA
AATCTCTGAAGCCTAGTAGAAGCCACATCTGAAGGCGTAACTACTTCTCA
TCGATGGTAATACTTTTGGGGTAGATACTGATCACTCATGACTGTACGTT
TATTGTCATATTATGTAAAGCCCGAGTCCCCTCTTCAGGGCTGAATCCAG
CAGCCGCAGTTGTCGACATGAAATATCTGTAGATTGCCAAACATTTCATG
GACTCGAAGCGAATCATGAGGCACAGCGCATCATGAACCAAGTCCAGGTA
CGTACCAAGTTCAGGTTCCTCAAAAAGACACGTAAATGGCTGTAACGTAC
TCTGCGGTTACCAGCACGTCAAACACTACCGTGAAGCTCTTTGCGGAGCG
CAAGCTATTAGTTCCCGTCAGTTATTGGTTTTACGTGCCTAACTGATGAA
ACAGAGAAATTGGGATTTCGTGAGGGCTGGGGTATTAGGAAATCGTGAGA
TAAACGGAGTAAAAATTGACGAAACTCGACACACTCACCCCCGACCACCT
TTCGAGGTCAAGTCAAGGAAGACTGGCCGCTTCGTCCACTCGTGCTATGA
CAACGATTCGTACTTGAAGCAACTGCAATAACTGTCTGTGCCAGAGCAAT
ACCTGTCGACTATCGCGGCAAAGCTGGTTTACAGTGTCGAGCGAGAATCT
CGAATTTAATTTCGATCGAACTTTGCCGTCCCGTTTGTGATAACTCGGGT
TTTGGTCCACACGCAGAACTTCGGGTGAAATATTCTGAATGGACGAGTTT
TGGCTAATACTCGAAAATATATCGTGAGGAATCGCTCGTTACACGTCGAT
GCAAGCCAGGACTTGCTTTGCGTCCATCGTTTGGCAACCGTTTTCCTGTG
TCGCCCTCGGGAGTCGCAAATAAACTACCAAAGAGGTTGAATACGAGAAT
TCATTGCTTGAAGAGAAGATATCTCATTTCGTGCTTCTGATCTAACCAAG
GAAAGTAACATGTTCTATACGAATGTGGGCGGAACGTACGCGTACATGAG
ACCTTTTGATATGTTCGTAAGTAGTGTTCCCTACCGTACCTCTGTCCCCT
TTTATAGATTCATGTACGATGCGTGCTGGTTGTGCAGCAGGGTCTGATGT
CTCTTCGATTCGTAGTGAGCGCAGCACCTGTGTCCTACTAGTATCCTTTA
TGCCTCGCTATTGTAATCACCCATTTTTTCATCATTCTACGAAAAGATGG
TCATTATTTGCTCTCGGTGCAACTTATCCGAATCTTGTCAGGGCTACACG
ATGGTGCGCGTGGCGGTCCGTCGTGGTGGACGCAAGAGGCCCAACGCCAA
GGGTATTGTATACGGTGAGATGTTCATGTCGATTTTTTATACTCGAACGT
ACCATCTTGCTGAATTGCGACCCCTCGCCTCTTCTCGATTTGTGCCAGCG
ATTAATAAGTAGTCAGATTACTACATCACTACATTTACTTATTTATTGAC
TCAATATCTTGATTCTTGATGACTGTACTTTTTATAGACAAAAAACATGA
TCGTAACTAGTGTAAAGCTGGATATGGTACGTGGACGAGGATATTACTTT
TTTGGCTTTGGGCTGCACAGTTGGTGTATTCATTTATCCTGACTGGAGCG
GAAGGTCTTGTCGCTGGAGATGCCACTACCGTGATGTGGGGAGTAACGCC
AAACATTTCATGTAGGTATAGCTTGAACTTTCGGTGAAGGTTCTGGCGGA
TTTGGTCACCGATAAGGGTGTTGAGTAGTTTTGATGAGCCGACCAAAGTA
AAATTCCCCAAGAGTTGTGCTGTTTAGATCCTGACCCTAGCGACCGTTGT
TGACTGAGATATAATATGGTAAAACGGTGCTGCTCCAGAGAGTTTATTTT
CTTTTTTTTACAAAGTTCGATTTTGTTCTCTCCCTACGTACTAATGGCTA
TAGTAGAGGTGAATCCAAAATATCAACTGACAGTTGTACCTGTAAGCTTA
CTGAAATGCGATGATTTGCTGGGGTGCCAAGGTCTGCATGCTAACGTCAC
GGTGAAGTCACAAACGCATCGGAACTAGTGTGAAACCAAGGAAGACCCGA
AACAGGCTCTCTTTCTTTCGTTCGCTCACAAAGATCAGTCGAGGGAAAAT
ACTCTTTCCGAAGAGAGTGATGGACTTCGTCCCGAAATTCTTGTTCATGC
TTGGAAGTCCGGCACGAAGTTGAATTGCCAAGCTACTGTGCAATCCATCT
TTCACTTGAGCGTCTACTGCCCACCGGAAAAACACGGCTGCCCTGACAAC
GAACTGAACAAACCCCGTGAAACAGCTCACAGAACAAAATGCGAATTCGA
CTGTGTGTGCCAATACCGAAGCAACCGAAGTCTTGGACCTATGAATTCCC
ATGTTGGTGAAAGGACTGGAAGATAGCATGAATGAGTTTGCACCCTTATG
TAGTATCGATTTCTCTGTAAGCAACCGGTTTATTGGGAAAAGAGGCAATA
AATCGCTCGAAACGATTGTTCCACTACACGATGGGTTGGACCTGCTGTAC
ACGCTTCCTGGTATGACATTACCTTTTACTGATGCCAGTCGTGGAGTAAC
GGTCATGCACGTCGACCACATGCTTTCCCCTTGATTCGTATACAACAGCT
TGTCCCCGACGTGGGGAAAGGAAAAAATCATCTGCGAGAAATTATTGTAG
TTCAAGTTGAATAATCGTTAAGGGAGAACCTCGCCCCATGAATATGATGC
CCTTATTCTAGAAGTGATGTCGTCGCTTTGCACTTTTAGAGCGTCTTTGC
TCGCCGCTCACGGACTCCGTGTTGACAATGCTCGCACGAACAAAGAGCGA
CTCAAGTGCCGCGTTTTATATATATTTTATCCCTTTTTTTCGAGTTGATC
CAGCACTGAATTGGCAATGATGGAAATGATAATCCGACCGTGTCGTGAGT
TTTGGTTCGCTGGGTCTGTGGTCTTATCACATTATATGAAACTGTTTCAT
TTTTTGTAAACCGACAGGTAAGCCCAAGCACCACGGTATCAACAAGATCA
AGGCCGTGCGTAACTTGAGGTCTGTGGCCGAGGAGCGGGTGGGCGCGAAG
TTCACCAACATGCGGGTGCTCAACTCGTACTGGATTAACCAGGATGCCAC
CTTCAAGTACTACGAGGTTTGTCATGGGTTACCCTTGCGATAGAACACCA
TAGCGCAGCTGTGCCCGATGAGGACGTGGTAATTTCATCCTTTGACTCGA
CATGGTTCCCTTCTAATTCTCACTTGAGCTGAGGAGTTGATTCATGACAT
GACATTATCACGCCGCTCCCTGAACAGACGGACCAGTACTATGTTGAGTA
GAAGAGGTACGTAGGTGACATGGTTATGTCACCAACCCACAACGCTTAAC
TTCATCTTGAAAATGCTTTCAATTATATTTGATGTGAACATGGTTGACTC
CTGATCGATTGTTGTTTTTCTGCAATCAACAGGTAATCACGGTGGACCCC
TCCCACAACGCGATCCGCAACGACCCCCGCATCCAATGGATCACTAAGCC
AGTCATGAAGCACCGCGAGTGCCGCGGCCTGACATCGGCGGGTCGCCAAC
ACAGGGGTCTACGCAAGAAGGGCCACCGCGCAAACAACCTCATCGGTTCC
TCTCGCCGCGCAGCGTGGAAGCGTCGCAACACCTTGTCGCTCAAGCGGTA
CCGTTAGGCACGGTGCTGAAGATTGCCTCTGGACGGCTGTTCCAAGAGGT
GGCCTTGAGGGGAAATGGAACGAGTGGATGTATGTTACTCCTCATGACAT
GGATGGTTCGCAAAATCTACGTACCGCGGGGTGATGCGCGACACTTTTGA
CTTTGGTGCATGCACACGGACTCAAAATTGTAGTCGGCGCCGTGGTCGTT
GCTTGGCCAATCAGATTCTTTACGGTCTGTTTCGCCGAGGAACCTCGTCA
AGTGGCACGCGGGTTGGGCTGAACAATAGAGCGATCTATTTGATGCTGGA
ATCCGTCGTGGGGTGGTTGTGTTCTGTTCGTGTCTTTTTCTGTTTGGGTC
GCAATCTTGTGTGCATCCCGCGTGGGGTACAACGGGGGCAATGTCGTGAA
CATGAAAGAAAGAATATCAAAACCAATAACACACCTTGATTTTTGTCATG
GAGACGTGATGAAATATTTTCTCTGACTGGAATGTCGACGTTGTCGAGAA
TTGGAATACACAACGAAACCCAGTAGTTGGAGCGTTGACTCGAATGGACA
GTAGGAGACAAGGTTGATTGCATTACTAGATGATACGATCAAACCTTCAC
TATCACCACTAAATCATTCCCGAAATCACATGTTCAAGTACCGAATCGAA
GATGAAATCAGTCGACCGCTCTCATGGGACAAATGTTTTTTGACTCGAGA
CGGTGGGTGGTACGAGGGCAAAGTAAAAACACATGAAACGTCACATCCCA
CACAAGGTGTCGTGGCCGGATACGACGTGAAAGCGAAGCTGTCGAGAAAA
CTTTGGGGTAGCGTGAACGGTTGATATGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1129:22730..28010+

>mRNA_H-paniculata_contig1129.826.1 ID=mRNA_H-paniculata_contig1129.826.1|Name=mRNA_H-paniculata_contig1129.826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig1129:22730..28010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCCTACAAGTACCTGGAGGAGCTCTGGCGGAAGAAGCAGAGCGA
TGTACTTCGCTTCGTACTGCGTGTGCGCGCGTGGGAGTACCGCCAACTCC
CCCGCGTGGTGAAGGTGTCTCACCCCACCAGGACCGACAAGGCCCACCGG
CTAGGCTACAAGGCAAAGCAGATGGGTGCCTACAAGTACCTGGAGGAGCT
CTGGCGGAAGAAGCAGAGCGATGTACTTCGCTTCGTACTGCGTGTGCGCG
CGTGGGAGTACCGCCAACTCCCCCGCGTGGTGAAGGTGTCTCACCCCACC
AGGACCGACAAGGCCCACCGGCTAGGCTACAAGGCAAAGCAGGGCTACAC
GATGGTGCGCGTGGCGGTCCGTCGTGGTGGACGCAAGAGGCCCAACGCCA
AGGGTATTGTATACGGGCTACACGATGGTGCGCGTGGCGGTCCGTCGTGG
TGGACGCAAGAGGCCCAACGCCAAGGGTATTGTATACGGTAAGCCCAAGC
ACCACGGTATCAACAAGATCAAGGCCGTGCGTAACTTGAGGTCTGTGGCC
GAGGAGCGGGTGGGCGCGAAGTTCACCAACATGCGGGTGCTCAACTCGTA
CTGGATTAACCAGGATGCCACCTTCAAGTACTACGAGGTAAGCCCAAGCA
CCACGGTATCAACAAGATCAAGGCCGTGCGTAACTTGAGGTCTGTGGCCG
AGGAGCGGGTGGGCGCGAAGTTCACCAACATGCGGGTGCTCAACTCGTAC
TGGATTAACCAGGATGCCACCTTCAAGTACTACGAGGTAATCACGGTGGA
CCCCTCCCACAACGCGATCCGCAACGACCCCCGCATCCAATGGATCACTA
AGCCAGTCATGAAGCACCGCGAGTGCCGCGGCCTGACATCGGCGGGTCGC
CAACACAGGGGTCTACGCAAGAAGGGCCACCGCGCAAACAACCTCATCGG
TTCCTCTCGCCGCGCAGCGTGGAAGCGTCGCAACACCTTGTCGCTCAAGC
GGTACCGTTAGGTAATCACGGTGGACCCCTCCCACAACGCGATCCGCAAC
GACCCCCGCATCCAATGGATCACTAAGCCAGTCATGAAGCACCGCGAGTG
CCGCGGCCTGACATCGGCGGGTCGCCAACACAGGGGTCTACGCAAGAAGG
GCCACCGCGCAAACAACCTCATCGGTTCCTCTCGCCGCGCAGCGTGGAAG
CGTCGCAACACCTTGTCGCTCAAGCGGTACCGTTAG
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