mRNA_H-paniculata_contig30487.8257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30487.8257.1
Unique NamemRNA_H-paniculata_contig30487.8257.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 4.190e-30
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 YTKVVLARTAKLGFLSNLAPADVLVRLREQYGFLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            Y KVVLARTA+L F   L+P +VL R R  YGFLFCLQPD  + FLGC PERLFLS+ +TVVTE+LAGTR RG T  ED RLG ELM+S K
Sbjct:  552 YCKVVLARTARLRFAGPLSPPNVLARFRGHYGFLFCLQPDASTAFLGCTPERLFLSKGSTVVTEALAGTRGRGDTTTEDERLGEELMDSEK 642          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A7S0TSH9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TSH9_HEMAN)

HSP 1 Score: 87.0 bits (214), Expect = 7.620e-20
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLREQYGFLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            KVVLAR   + F  ++ P DVL++LR  +G+LFCLQP   S FLGC+PE LF      + T ++AGTRPRG +  ED  L  EL+ SSK
Sbjct:   48 KVVLARNYLVKFDVDVEPLDVLLQLRSHHGYLFCLQPQRGSAFLGCSPEPLFRISPECIETMAIAGTRPRGGSEREDEELAQELLASSK 136          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A2E7ZSD1_9DELT (Isochorismate synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7ZSD1_9DELT)

HSP 1 Score: 80.9 bits (198), Expect = 7.770e-16
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 YTKVVLARTAKLGFLSNLAPADVLVRL--REQYGFLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSKVG 279
            + KVV AR  ++ F  +  P  + + L  +EQ  F F +QP   S F G +PERLF  R + ++TE+LAGTRPRG T  +D+ L TEL+NS K G
Sbjct:  218 FRKVVFARRRRVRFSQDADPMHMFIALSTQEQATFRFFVQPAPDSAFFGASPERLFSLRGDRILTEALAGTRPRGATDAQDSALATELLNSDKDG 312          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A1G1NDZ6_9BACT (Isochorismate synthase MenF n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1NDZ6_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 3.320e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 YTKVVLARTAKLGFLSNLAPADVLVRLRE--QYGFLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            Y K+VLAR +     + L  AD+L  L++   + F F LQP   + F+G +PERL+     T+ TE+LAGTRPRG  P  D +L  EL+NS+K
Sbjct:  217 YKKIVLARKSSFRMSAPLEAADILRNLQKVSPHCFYFYLQPKAGAAFVGASPERLYKREGQTIQTEALAGTRPRGSNPQADEKLKKELLNSTK 309          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A524LRL9_9BACT (Isochorismate synthase MenF n=1 Tax=Calditrichales bacterium TaxID=2528038 RepID=A0A524LRL9_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 8.580e-14
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 YTKVVLARTAKLGFLSNLAPADVLVRLREQYG--FLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            Y K+VLAR  +L FLS++ P  ++  LRE+      FC+Q  +H  FLG  PE L+   D  +++E++AGTRPRG+   ED  L   L  S K
Sbjct:  213 YEKIVLAREIELQFLSHIDPFSLMSVLRERNSQTINFCIQNGKHQVFLGSTPEMLYRRTDREILSEAVAGTRPRGRNAAEDLALAMALQTSEK 305          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: D0MFF4_RHOM4 (Isochorismate synthase MenF n=5 Tax=Rhodothermus marinus TaxID=29549 RepID=D0MFF4_RHOM4)

HSP 1 Score: 72.8 bits (177), Expect = 5.580e-13
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLREQYG--FLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            KVVLAR  +  F   L    +L RL+E     F F  QP+  + FLG +PERLF   D  V +E++AGTRPRG+T  +DARL  EL+ S K
Sbjct:  219 KVVLARQVQYAFGEALDGLALLQRLQEATPGCFHFYYQPEPGTAFLGASPERLFRRADGHVWSEAVAGTRPRGRTEADDARLAAELLQSEK 309          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: Q2LXF2_SYNAS (Isochorismate synthase MenF n=1 Tax=Syntrophus aciditrophicus (strain SB) TaxID=56780 RepID=Q2LXF2_SYNAS)

HSP 1 Score: 72.4 bits (176), Expect = 7.550e-13
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLR--EQYGFLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            K+VLAR   +       PA ++  L   ++  F F  Q D+   FLG +PERLF  ++  ++TE++AGTRPRGKTP +D RL  EL++S K
Sbjct:  210 KIVLARKKVITHRDLWNPAQIIASLSRIQENSFTFFYQVDDGIAFLGRSPERLFRMQNGQILTEAIAGTRPRGKTPFDDQRLEAELLSSPK 300          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A1M6Q7Q4_9BACT (Isochorismate synthase MenF n=2 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6Q7Q4_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 4.940e-12
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLREQYG--FLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            KVVLAR  +  F   L    +L RL E     F F  QP   + FLG +PERLF   D  V +E++AGTRPRG+T  +DARL  EL+ S K
Sbjct:  208 KVVLARQVQYVFNEALDGLALLHRLEEATPGCFHFYYQPQPGTAFLGASPERLFRRADGHVWSEAVAGTRPRGQTEADDARLAAELLQSEK 298          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A7S3Q7H0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7H0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.400e-12
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLR---EQYGFLFCLQPDE-HSTFLGCAPERLFLSR--DNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            KVVLAR   L F + +   DV+++L+      G LF ++P    + FLGC+PERLF  R  D  V++E+LAGTRPRG+T   DA L  +LM S K
Sbjct:  446 KVVLARRGDLHFATEVKGLDVMMKLKFGGRVDGHLFYMKPGRLGNEFLGCSPERLFQVRGDDGIVMSEALAGTRPRGRTSEADAELLRDLMRSDK 540          
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Match: A0A2H5XN56_9BACT (Isochorismate synthase MenF n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5XN56_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 6.750e-12
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 KVVLARTAKLGFLSNLAPADVLVRLREQYG--FLFCLQPDEHSTFLGCAPERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSK 273
            KVVLAR     F   L    ++ RL E     F F  QP+    FLG +PERLF   +  V TE++AGTRPRG+T  +DARL  EL+ S K
Sbjct:  206 KVVLARQVCFTFGEPLDSLTLMQRLEEATPGCFHFYYQPEVGKAFLGASPERLFRRAEGQVWTEAVAGTRPRGQTEADDARLAAELLESEK 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30487.8257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF2_ECTSI4.190e-3067.03Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A7S0TSH9_HEMAN7.620e-2050.56Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2E7ZSD1_9DELT7.770e-1645.26Isochorismate synthase n=1 Tax=Myxococcales bacter... [more]
A0A1G1NDZ6_9BACT3.320e-1444.09Isochorismate synthase MenF n=2 Tax=unclassified C... [more]
A0A524LRL9_9BACT8.580e-1441.94Isochorismate synthase MenF n=1 Tax=Calditrichales... [more]
D0MFF4_RHOM45.580e-1347.25Isochorismate synthase MenF n=5 Tax=Rhodothermus m... [more]
Q2LXF2_SYNAS7.550e-1342.86Isochorismate synthase MenF n=1 Tax=Syntrophus aci... [more]
A0A1M6Q7Q4_9BACT4.940e-1247.25Isochorismate synthase MenF n=2 Tax=Rhodothermus p... [more]
A0A7S3Q7H0_9STRA5.400e-1246.32Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A2H5XN56_9BACT6.750e-1246.15Isochorismate synthase MenF n=3 Tax=Bacteria TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30487contigH-paniculata_contig30487:1641..2766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue6.2e-26
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.0479991-CDS-H-paniculata_contig30487:1640..17541622929935.0479991-CDS-H-paniculata_contig30487:1640..1754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30487 1641..1754 +
1691481076.534762-CDS-H-paniculata_contig30487:1640..17541691481076.534762-CDS-H-paniculata_contig30487:1640..1754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30487 1641..1754 +
1622929935.0595899-CDS-H-paniculata_contig30487:2601..27661622929935.0595899-CDS-H-paniculata_contig30487:2601..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30487 2602..2766 +
1691481076.5467947-CDS-H-paniculata_contig30487:2601..27661691481076.5467947-CDS-H-paniculata_contig30487:2601..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30487 2602..2766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30487.8257.1prot_H-paniculata_contig30487.8257.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30487 1641..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30487.8257.1

>prot_H-paniculata_contig30487.8257.1 ID=prot_H-paniculata_contig30487.8257.1|Name=mRNA_H-paniculata_contig30487.8257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
YTKVVLARTAKLGFLSNLAPADVLVRLREQYGFLFCLQPDEHSTFLGCAP
ERLFLSRDNTVVTESLAGTRPRGKTPVEDARLGTELMNSSKVG
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mRNA from alignment at H-paniculata_contig30487:1641..2766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30487.8257.1 ID=mRNA_H-paniculata_contig30487.8257.1|Name=mRNA_H-paniculata_contig30487.8257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-paniculata_contig30487:1641..2766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACCAAAGTGGTGCTCGCGCGTACTGCAAAGCTGGGGTTTCTCAGTAA CCTGGCTCCCGCCGATGTGCTCGTTCGCTTGAGAGAGCAATACGGTTTTC TGTTCTGCTTGCAGGTGTGTATAGGGCTGGTTACTTTCGATCACAGCAGC CCCAAATCGAAGGAAATATAGTGAGTCTACACAGTAGTATGTGTGTGTGT GTGTGTTCTGGTTGTAGTGCTGCAGAGAAGCATTTCTTGTTTTTTCCTGT TCACGACCTGAATGTGCGTCATTGAACAACGGACATCTCGAGCATGGTTT ATGACGTGGGCTCGACTGTCATAAGACGTGGTGCTTGAGCGTTTTTGTTC AGATTCCAGTCCAACTCCTACGGTCTGTAGCGTGAGGCTTCTCTTTTGAT CATTGTTCGGTTCAAGATGTCCCCTATTGTTTTGGTAATCGGCTGGGTAA AAAATGTCTTGTAGTTGCACAAAATAAGCAAATACCATTATCCAAGAGAG GAAGCAAGAATGCACCAGTAGTGGAGTATGACCACGATTCCCCTACCCCT CTGCAGTCATACTCCACTCCGTGTTTTGTCCTCGACCCACGCACAAGGGC TCGCTGCGTCCGCACCAAGATTCGTCTTTCAGAAGTTACTTGAATATGGA GTTGAAAATATGTTTCGAAACGATGACCATAATGCTAACCTTGACGTATC AAGTAGTTAAAGAATGACTGTAAGTTGTTCACCTCAGTAGGGTTAAACTA CAAGCGAGATCCAATTTGTATGATTGATTTTGTGGAGCTTGCACTTATAC TTACTGCGACTACACGGTCGGACAAAGATCAATTCTCGCGACTGATCCAC TGTTCCACATTTCCCCCCCCAACCCGTTCCCCGCCGCTGCCACCGACGTG ACGTCGTGCTTGCTCAATACACGCGGTGGGCTTTATGCTTCCCAAAAAAT GAAAACAAAAGCCGGATGAACACTCGACCTTTTTGGGATGTGCGCCCGAG AGGTTGTTTTTGTCCCGAGATAATACTGTCGTAACCGAGTCGTTAGCTGG AACAAGACCCAGGGGGAAAACTCCTGTTGAAGACGCTCGGCTGGGTACAG AGCTCATGAATAGCTCAAAGGTTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig30487:1641..2766+

>mRNA_H-paniculata_contig30487.8257.1 ID=mRNA_H-paniculata_contig30487.8257.1|Name=mRNA_H-paniculata_contig30487.8257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig30487:1641..2766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACCAAAGTGGTGCTCGCGCGTACTGCAAAGCTGGGGTTTCTCAGTAA
CCTGGCTCCCGCCGATGTGCTCGTTCGCTTGAGAGAGCAATACGGTTTTC
TGTTCTGCTTGCAGTATACCAAAGTGGTGCTCGCGCGTACTGCAAAGCTG
GGGTTTCTCAGTAACCTGGCTCCCGCCGATGTGCTCGTTCGCTTGAGAGA
GCAATACGGTTTTCTGTTCTGCTTGCAGCCGGATGAACACTCGACCTTTT
TGGGATGTGCGCCCGAGAGGTTGTTTTTGTCCCGAGATAATACTGTCGTA
ACCGAGTCGTTAGCTGGAACAAGACCCAGGGGGAAAACTCCTGTTGAAGA
CGCTCGGCTGGGTACAGAGCTCATGAATAGCTCAAAGGTTGGTCCGGATG
AACACTCGACCTTTTTGGGATGTGCGCCCGAGAGGTTGTTTTTGTCCCGA
GATAATACTGTCGTAACCGAGTCGTTAGCTGGAACAAGACCCAGGGGGAA
AACTCCTGTTGAAGACGCTCGGCTGGGTACAGAGCTCATGAATAGCTCAA
AGGTTGGT
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