mRNA_H-paniculata_contig3048.8256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3048.8256.1
Unique NamemRNA_H-paniculata_contig3048.8256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3048.8256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3048contigH-paniculata_contig3048:6335..8162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size334
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3048.8256.1prot_H-paniculata_contig3048.8256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3048 6335..8162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.9666398-CDS-H-paniculata_contig3048:6334..63941622929934.9666398-CDS-H-paniculata_contig3048:6334..6394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 6335..6394 -
1691481076.510659-CDS-H-paniculata_contig3048:6334..63941691481076.510659-CDS-H-paniculata_contig3048:6334..6394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 6335..6394 -
1622929934.978324-CDS-H-paniculata_contig3048:7335..74321622929934.978324-CDS-H-paniculata_contig3048:7335..7432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 7336..7432 -
1691481076.5186315-CDS-H-paniculata_contig3048:7335..74321691481076.5186315-CDS-H-paniculata_contig3048:7335..7432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 7336..7432 -
1622929934.9992714-CDS-H-paniculata_contig3048:7986..81621622929934.9992714-CDS-H-paniculata_contig3048:7986..8162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 7987..8162 -
1691481076.5261264-CDS-H-paniculata_contig3048:7986..81621691481076.5261264-CDS-H-paniculata_contig3048:7986..8162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 7987..8162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3048.8256.1

>prot_H-paniculata_contig3048.8256.1 ID=prot_H-paniculata_contig3048.8256.1|Name=mRNA_H-paniculata_contig3048.8256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
LVKATSSGAFEAEVKSGIQMRNRNALGFAKLLGYKRNFDPPHGNNQSAFN
AIVYGDVGRFSLRTAIICRGMALPYCDVKVEPKAIDDLFAQVLNILVHLH
ADGGCSHCDLD
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mRNA from alignment at H-paniculata_contig3048:6335..8162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3048.8256.1 ID=mRNA_H-paniculata_contig3048.8256.1|Name=mRNA_H-paniculata_contig3048.8256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-paniculata_contig3048:6335..8162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTAAAAGCAACGTCATCTGGCGCGTTTGAGGCCGAGGTGAAGTCTGG
TATCCAGATGCGTAACAGGAATGCCCTCGGCTTCGCCAAACTGCTTGGCT
ACAAGAGAAATTTCGATCCGCCGCATGGAAACAACCAGTCTGCCTTCAAT
GCGATCGTCTACGGGGATGTGGGCAGGTATTTTGATCGTACCGCACAGTA
TGGGGTGGGATGCTTTATGTTGGCAAATATTGAACTACGCGAAATATAAA
TCCGAGATAGATGGTATAACCTATGGATCATGTCATCTCGTCTGCTCTAG
TAGTCAATCGTATCGCGCGGTAATGTGAATGTGGATGTTATTTGAGGTGA
AAAGTATACTAGGGTAGGCAATGGCTCCACAGGCACACTGGTGTGCGAAT
CGTGAATTGTGCATCTCCGCTCTAGAGAGGGACTGAACGACACCTGTTTT
TGAGATCCACCGTTTTGCGTCGCGAAATTGAAATATGCATTGAGCACGTT
GATACGAATAGAACAGACAGGTGGCTGTATTTTTGCCTGTTCGATGTGAC
AGCGTGTCGCTTAGCCAGTTTCGGGTCTAACTCCTTTCCGGGGAGTGGAA
AAAAAGACCGTCAAGTCAGTAGCCACGAGTGAGACGATCATGTTGAGTGC
TAACATGATTGTTGGCAGCACAGTTGTCCGTCTGCCTTATAACCGTGCGT
ATTCCATGTCCGTTTTTCTTCATTTGCCAGGTTTTCGCTGAGAACTGCCA
TCATCTGCAGGGGCATGGCATTGCCTTACTGTGATGTGAAGGTGGAGCCG
AAAGCCATCGATGACTTATTTGCCCAGGTAAGCTACTACGGAAGATGATA
AGTAGCGCTTGTTGATTTCTTGCTGGACATTGAGTCCAAGACAAGAGACA
GTATAGCAATCAACCGCGAAGCAGCAAAGAAACTGGATATTGTTCTGATG
TCAAAGTGTGCCAGCCTGTTCACTTTTCTCGCTGTCTATAGGCAGACTCG
GTGTGTTTTTTTCGTACAATGTCAAAGTTTTTGTGGACAGAGATCATATC
TTACCATAAACTATGGTATACCTCTACCATTTCTACCAACTGCTGGAGTG
AGAAGCTGGTGGCGTGAATGAAGTTGGCAAACCGGGGCGTCACGATGAAA
GATTAACCGTCAAAATTCCATGATACAAGTTTTGTCCCGAGATCCGACCG
ATATTCGCATATGCAAACGAGGTTTCTTCGAGAGAATGTTGTTTTTACCG
GTATGTTTTTATTCACGCGCCGTAAACGCGGGCAGGATTTTTGTTTTTGA
TCATCGAAGGGGGGGCTTCCATCGTCAGAGAGCTGAGAGCATCGCCTCCA
CACCGATATGGGCTTACTCCCTTGATGCAAATTGTGTGTAGCTGATACTA
TGTCTCCAACCGAATGATTTGTGAAGAACAACGACATTTTGGCCCATAGA
GATAGACCGGGGGACAAAAGAGAAGACCAATTTGATCAAGCAATCAATCC
TAAACACGACGGTATGCTCGTGTTGTGTCTCGCTGTTGAAGGGTTGCTCT
GAAGTTGTACCGTCCTTGCTGCTATTTCTGGTTTCATGATAAGTTGGGCA
GAGAAAACATGCTTCTGGCGCGCGTTTTCATCAGGGCACCGAGCAGCTTG
ACGTTCATTTCCATCACATCACATTGTGTTGCTTGTGATTGGAAGGGCTC
CTCAGTTGCTGGCAAAGAGGCAAAGGTGTGACCGTCCACCTGCCCCGCTC
TGCTTACCTTTTCTGTAGGTATTGAACATCCTGGTGCACCTGCACGCCGA
CGGGGGGTGCTCACACTGCGACCTGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3048:6335..8162-

>mRNA_H-paniculata_contig3048.8256.1 ID=mRNA_H-paniculata_contig3048.8256.1|Name=mRNA_H-paniculata_contig3048.8256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig3048:6335..8162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTAAAAGCAACGTCATCTGGCGCGTTTGAGGCCGAGGTGAAGTCTGG
TATCCAGATGCGTAACAGGAATGCCCTCGGCTTCGCCAAACTGCTTGGCT
ACAAGAGAAATTTCGATCCGCCGCATGGAAACAACCAGTCTGCCTTCAAT
GCGATCGTCTACGGGGATGTGGGCAGCTGGTAAAAGCAACGTCATCTGGC
GCGTTTGAGGCCGAGGTGAAGTCTGGTATCCAGATGCGTAACAGGAATGC
CCTCGGCTTCGCCAAACTGCTTGGCTACAAGAGAAATTTCGATCCGCCGC
ATGGAAACAACCAGTCTGCCTTCAATGCGATCGTCTACGGGGATGTGGGC
AGGTTTTCGCTGAGAACTGCCATCATCTGCAGGGGCATGGCATTGCCTTA
CTGTGATGTGAAGGTGGAGCCGAAAGCCATCGATGACTTATTTGCCCAGG
TTTTCGCTGAGAACTGCCATCATCTGCAGGGGCATGGCATTGCCTTACTG
TGATGTGAAGGTGGAGCCGAAAGCCATCGATGACTTATTTGCCCAGGTAT
TGAACATCCTGGTGCACCTGCACGCCGACGGGGGGTGCTCACACTGCGAC
CTGGACGTATTGAACATCCTGGTGCACCTGCACGCCGACGGGGGGTGCTC
ACACTGCGACCTGGAC
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