mRNA_H-paniculata_contig3048.8255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3048.8255.1
Unique NamemRNA_H-paniculata_contig3048.8255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3048.8255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3048contigH-paniculata_contig3048:959..1714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3048.8255.1prot_H-paniculata_contig3048.8255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3048 959..1688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.8907928-CDS-H-paniculata_contig3048:958..11261622929934.8907928-CDS-H-paniculata_contig3048:958..1126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 959..1126 -
1691481076.484289-CDS-H-paniculata_contig3048:958..11261691481076.484289-CDS-H-paniculata_contig3048:958..1126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 959..1126 -
1622929934.906618-CDS-H-paniculata_contig3048:1571..16881622929934.906618-CDS-H-paniculata_contig3048:1571..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 1572..1688 -
1691481076.4953663-CDS-H-paniculata_contig3048:1571..16881691481076.4953663-CDS-H-paniculata_contig3048:1571..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3048 1572..1688 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.925392-UTR-H-paniculata_contig3048:1688..17141622929934.925392-UTR-H-paniculata_contig3048:1688..1714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3048 1689..1714 -
1691481076.5030174-UTR-H-paniculata_contig3048:1688..17141691481076.5030174-UTR-H-paniculata_contig3048:1688..1714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3048 1689..1714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3048.8255.1

>prot_H-paniculata_contig3048.8255.1 ID=prot_H-paniculata_contig3048.8255.1|Name=mRNA_H-paniculata_contig3048.8255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MTREPLTWLQRETRVWDRPTRGRLAAGSDAALASDAAQIFCHENPLPMVT
SDRWMPRPLLFSSARPRVMFLFLASSARPRRQATKQASVASVHVE
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mRNA from alignment at H-paniculata_contig3048:959..1714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3048.8255.1 ID=mRNA_H-paniculata_contig3048.8255.1|Name=mRNA_H-paniculata_contig3048.8255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig3048:959..1714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGTAGCGGCGGCGACGGAGAACGATGACCAGGGAGCCGTTAACGTGG
CTGCAGCGAGAAACGAGGGTATGGGATCGGCCAACACGGGGTCGACTGGC
GGCGGGGTCAGACGCAGCACTCGCATCCGACGCCGCCCAGATTGTGAGTG
TTGGTTTGTGTGTTCCAGTTGGTTAGCTTTCTCTCCTTTCTCCAAACCCT
GAAACCGTTTGGTATGTTTGGCGGAGCGGGTTACAGTATGTTGTTTGCGC
GCGTTCAAGAGCTGCTTGATTCTCAACAACGAGACGATGATGTGGTATAT
GATGAACGCAGCCGGGGAATGTTGATCTACCGGTACAGTAAATCCGTTGA
GCAAATATCGACAGTTGTTGGAGACCTGCTGAAGTGTGTTGGTGTTCGGC
TCGCTTTTACCCTCATGTTGTTCTCCAGCCCCGCGCCCATGGCCTAGCCC
TGAGATCCGTTGTTGGTGTCTTGATAGCACTCCCGCCAACATGGCGAACT
GTTAATGGTGCTTGCCCCTCATCTCTTGCCCTGAAAATTCCCGTTATCCG
CTGCGTTTCCTTACATCTCCCCTCTGTACGTGTACCAGTTTTGTCATGAG
AACCCTCTTCCGATGGTGACGAGTGACCGATGGATGCCTCGACCACTTTT
GTTTTCGTCAGCTAGACCTAGGGTCATGTTCTTGTTTTTGGCATCCTCAG
CACGTCCACGGAGACAAGCGACAAAACAAGCCAGCGTCGCCAGTGTCCAT
GTTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3048:959..1714-

>mRNA_H-paniculata_contig3048.8255.1 ID=mRNA_H-paniculata_contig3048.8255.1|Name=mRNA_H-paniculata_contig3048.8255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig3048:959..1714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGGAGCCGTTAACGTGGCTGCAGCGAGAAACGAGGGTATGGGA
TCGGCCAACACGGGGTCGACTGGCGGCGGGGTCAGACGCAGCACTCGCAT
CCGACGCCGCCCAGATTATGACCAGGGAGCCGTTAACGTGGCTGCAGCGA
GAAACGAGGGTATGGGATCGGCCAACACGGGGTCGACTGGCGGCGGGGTC
AGACGCAGCACTCGCATCCGACGCCGCCCAGATTTTTTGTCATGAGAACC
CTCTTCCGATGGTGACGAGTGACCGATGGATGCCTCGACCACTTTTGTTT
TCGTCAGCTAGACCTAGGGTCATGTTCTTGTTTTTGGCATCCTCAGCACG
TCCACGGAGACAAGCGACAAAACAAGCCAGCGTCGCCAGTGTCCATGTTG
AATTTTGTCATGAGAACCCTCTTCCGATGGTGACGAGTGACCGATGGATG
CCTCGACCACTTTTGTTTTCGTCAGCTAGACCTAGGGTCATGTTCTTGTT
TTTGGCATCCTCAGCACGTCCACGGAGACAAGCGACAAAACAAGCCAGCG
TCGCCAGTGTCCATGTTGAA
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