prot_H-paniculata_contig3046.8253.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3046.8253.1
Unique Nameprot_H-paniculata_contig3046.8253.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length74
Homology
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BLAST of mRNA_H-paniculata_contig3046.8253.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.250e-8
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:    1 MIKKAEEAERLERDKECRKTNNRIKHSKAGAVEIEPERKQKCSRSL 46
            ++KKA EAER++RDKE RK +NRIKHSKAG VE  PERK+K  + L
Sbjct:  401 IVKKAAEAERVQRDKERRKVDNRIKHSKAGTVETVPERKKKIVKEL 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3046.8253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIH9_ECTSI5.250e-865.22Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007287Sof1-like proteinPFAMPF04158Sof1coord: 1..41
e-value: 1.0E-5
score: 25.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3046contigH-paniculata_contig3046:6532..8445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3046.8253.1mRNA_H-paniculata_contig3046.8253.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3046 6480..8445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3046.8253.1 ID=prot_H-paniculata_contig3046.8253.1|Name=mRNA_H-paniculata_contig3046.8253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MIKKAEEAERLERDKECRKTNNRIKHSKAGAVEIEPERKQKCSRSLRDHH
HDHVTANREHTRSSPLFPVPGMDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007287Sof1