mRNA_H-paniculata_contig3046.8253.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3046.8253.1
Unique NamemRNA_H-paniculata_contig3046.8253.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3046.8253.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-14
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2 
Query:    2 EHMLKVRPIS*HQHVPKMIKKAEEAERLERDKECRKTNNRIKHSKAGAVEIEPERKQKCSRSL 190
            EHM +VR I+ H+HVP+++KKA EAER++RDKE RK +NRIKHSKAG VE  PERK+K  + L
Sbjct:  384 EHMPEVRRIAKHRHVPRIVKKAAEAERVQRDKERRKVDNRIKHSKAGTVETVPERKKKIVKEL 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3046.8253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIH9_ECTSI1.180e-1463.49Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3046contigH-paniculata_contig3046:6480..8445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3046.8253.1prot_H-paniculata_contig3046.8253.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3046 6532..8445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.7649806-UTR-H-paniculata_contig3046:6479..65311622929934.7649806-UTR-H-paniculata_contig3046:6479..6531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3046 6480..6531 +
1691481076.4408498-UTR-H-paniculata_contig3046:6479..65311691481076.4408498-UTR-H-paniculata_contig3046:6479..6531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3046 6480..6531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.7797518-CDS-H-paniculata_contig3046:6531..65881622929934.7797518-CDS-H-paniculata_contig3046:6531..6588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3046 6532..6588 +
1691481076.451379-CDS-H-paniculata_contig3046:6531..65881691481076.451379-CDS-H-paniculata_contig3046:6531..6588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3046 6532..6588 +
1622929934.8002982-CDS-H-paniculata_contig3046:8280..84451622929934.8002982-CDS-H-paniculata_contig3046:8280..8445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3046 8281..8445 +
1691481076.4618986-CDS-H-paniculata_contig3046:8280..84451691481076.4618986-CDS-H-paniculata_contig3046:8280..8445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3046 8281..8445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3046.8253.1

>prot_H-paniculata_contig3046.8253.1 ID=prot_H-paniculata_contig3046.8253.1|Name=mRNA_H-paniculata_contig3046.8253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MIKKAEEAERLERDKECRKTNNRIKHSKAGAVEIEPERKQKCSRSLRDHH
HDHVTANREHTRSSPLFPVPGMDQ
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mRNA from alignment at H-paniculata_contig3046:6480..8445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3046.8253.1 ID=mRNA_H-paniculata_contig3046.8253.1|Name=mRNA_H-paniculata_contig3046.8253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-paniculata_contig3046:6480..8445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACATATGCTCAAGGTCCGGCCCATCTCCTAGCATCAACACGTGCCGA
AGATGATCAAGAAAGCCGAGGAGGCAGAGCGACTTGAGAGAGACAAGGAA
TGCCGGAAGGTATACATCCTATATGACTGCTTATAGTAGAGAATGAAACA
CATGAAACGAATGACAATTTTTTTTTGCTTTATGTTGAAAATTTACATTG
ATTTATTTCCTGGAATGTGTCGACCCTTGTTCTCAGCTTTTTGAGGTCAT
GTGAACTTCAATTTCTCTATGTGGCTCTCAGTAAGTTTGGTCCAGGTGTA
GCTGGATGTCCTTCTTCGTTTATTTCTGTATGCATTTCCAGCCAAAGGGT
CATTCGTAGCCGTTGCAACCATAGAGTGTTTGTGAAACAGAAATCTGTTT
CACAATCAAATTCGTATCAGCACACTTTCCGTCAGCCGCAGAGGACAAAT
TTTTAGCAATCGAAATCTGAAAACGCGTTGGCGAAAATCTGAAAGTTGAC
ACTTTTCGGAACAGGTGGAAATGCTTTATCCTAGTTTTTGCGTGTGCTCT
TGTTTCTTGTGCATTTATTTGTATATCAATACGAAACAGACCTCGTTCCT
TTCGCAAACACGAACTCATGCCAACCGAGCGCTGTTGCCTGAGCATGCAA
AATTGAAGTGACCGCGCTGGACACGAACAGCAGTAGAGACAGATTGTACA
ACGGCACTTCCCGGGCTACAGTATTGTAGTAGGTACTCCGGCAACGAACT
GTTGTTTTTACCACGCAGCATCAACGCGCGAAACACATGATGTCGCTGTT
GACATGCTAAACACACAGAATCACGTGTGATTGCGACCAACAGCATGCCA
GCTGTTGCAACGGCATGTGCTGGCCGCACGGCAAGGGTCTGGAGATCATC
GAAGGGTCAGTCACGGGAAAAGAAGGGTTTCGGCATGGGGAAACACTCGA
ACAATCGTGACGGCAATAATACGTGCATAACTTGTACAGCTAGCTCACCG
ACAGACACTACTTCTACCGTTTACAACTGACGACTTGATGTTGTGTCAGG
CATCGCGTATTGGCCAACCACGGAGCGTTTCGACCATCAGCCTCACAGAT
TCGAATTTCGATATCAAGTTTCGGGTGTTTTTGGATTTAACGAAGTACCT
AGTCAATATTCGATAAAAATGAGGAAAAAACCTTGCCGTCGGTAACAGGT
CAGCAACAAATAGAAAATCAAAATAGGACTTTGTTTTCGCGAAGGCTCTC
GAGTCCTATGTACGACTGTAGTGCATTTCTTGACTAGTTTATTATAAAGT
TGCGATGTGGCAGACTATCGGAGAACTGCCTCTTTAGTTTTTTTGTGAGG
TAACGAAAGTGAAATTGGTACTGATTAGAGATCATGACCATCGTAGTAGT
ATATTAATCATGACTGAAATTTTCGCCAGGTCAGTCAACTGTGGAAATTT
TAGATCAATGCGTCGTGCTGAGGATGTAATGTATCCCAGGATACATCAAG
TTTCACGGTCATAATGCAATCCGATAACATCGTAAGTAGATGCATTCATT
CGAGAGCTTTTGCCGAATGGAAATGTTCAAGGTTGTGACTTTGCTTTTCG
CGGTTGGGATATACCGCTGCTCAAGTTCAGGCCGAAACATTTCATATTGA
AGCTAAAAATCATCCTTCTCTGTCCAAGTTTGTCAAGAATACGTTTCTAG
TCGGCTGCTGTGTGCCCTTGTGTCTCATGTCCTGTTGTTTCTCGTCCTCC
TGCACGTGTTTTTGTTGTCGCTACATTTGGTATTTGTTTTATACCGAACA
GACGAACAACCGCATCAAGCACAGCAAGGCTGGGGCAGTAGAAATTGAAC
CCGAACGAAAGCAAAAGTGTTCAAGGAGCTTACGTGATCATCACCATGAC
CACGTTACTGCCAATCGAGAGCACACTCGCAGCTCGCCGCTGTTCCCTGT
GCCGGGTATGGATCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3046:6480..8445+

>mRNA_H-paniculata_contig3046.8253.1 ID=mRNA_H-paniculata_contig3046.8253.1|Name=mRNA_H-paniculata_contig3046.8253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig3046:6480..8445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAGAAAGCCGAGGAGGCAGAGCGACTTGAGAGAGACAAGGAATG
CCGGAAGATGATCAAGAAAGCCGAGGAGGCAGAGCGACTTGAGAGAGACA
AGGAATGCCGGAAGACGAACAACCGCATCAAGCACAGCAAGGCTGGGGCA
GTAGAAATTGAACCCGAACGAAAGCAAAAGTGTTCAAGGAGCTTACGTGA
TCATCACCATGACCACGTTACTGCCAATCGAGAGCACACTCGCAGCTCGC
CGCTGTTCCCTGTGCCGGGTATGGATCAAACGAACAACCGCATCAAGCAC
AGCAAGGCTGGGGCAGTAGAAATTGAACCCGAACGAAAGCAAAAGTGTTC
AAGGAGCTTACGTGATCATCACCATGACCACGTTACTGCCAATCGAGAGC
ACACTCGCAGCTCGCCGCTGTTCCCTGTGCCGGGTATGGATCAA
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