prot_H-paniculata_contig3045.8249.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3045.8249.1
Unique Nameprot_H-paniculata_contig3045.8249.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length170
Homology
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.970e-19
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct:   15 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 167          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.210e-18
Identity = 53/169 (31.36%), Postives = 90/169 (53.25%), Query Frame = 0
Query:    2 MLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLIST-KGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            ++++A  +  +L +   + AY+ A + +EI++  P       G V ++++A+Y   Q+GR W  EA       G EQ   D C+F K+VDGEVV +I+IY D++L++  +G +   E  A L     +K+L +  +Y GC    D +     + Q  Y  SM +RF +T
Sbjct:   30 VIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR--EELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVT 196          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.560e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct:  228 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 380          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.570e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct:  484 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 636          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct:  408 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 560          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.660e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct:  661 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 813          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.710e-18
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   11 WELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            W+++      AY  A + +EI++ +P     + G   ++++A+Y   Q+GR W  EA     + G EQ   D C+F K+VDGEVV +I+IY D++++S    +   E LA L+    +K+L D  +Y GC    D +     + Q  Y  SM  RF +T
Sbjct: 1123 WDIKQ-----AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEE-REELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVT 1275          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-18
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 0
Query:    2 MLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLIST-KGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            ++++A  +  +L +   + AY+ A + +EI++  P   R   G V ++++A+Y   Q+GR W  EA       G EQ   D C+F K+VDGEVV +I+IY D++L++  +G +   E  A L     +K+L +  +Y GC T  D +     +    Y  SM +RF +T
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER--EELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKRFDVT 279          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.220e-18
Identity = 53/172 (30.81%), Postives = 95/172 (55.23%), Query Frame = 0
Query:    1 MMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRG----AVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 168
            ++L++A I D EL N+  E AYLQ+ + ++++V+ P+ Y ++       V RL K++Y   Q+GR W  +    F   G   S AD C++ K      + VI++Y D+L+I++   ++  +F   +  +  +K+L++  + LG    RDR+KR + I Q  Y   M  +FG+
Sbjct:  509 LILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGM 680          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.780e-18
Identity = 54/168 (32.14%), Postives = 90/168 (53.57%), Query Frame = 0
Query:    2 MLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGIT 169
            ++++A  +  +L +   + AY+ A + +EI++  P       G V ++++A+Y   Q+GR W  EA       G EQ   D C+F K+VDGEVV +I+IY D++L++  G +   E LA L     +K+L +  +Y GC    D +     + Q  Y  SM +RF +T
Sbjct:  333 VIAVATEKGKKLAHWDVKQAYINAKL-KEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADGGE-RGELLASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 498          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCN6_9PHAE8.970e-1932.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.210e-1831.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE1.560e-1832.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE1.570e-1832.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE1.600e-1832.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE1.660e-1832.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE1.710e-1832.70CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5JXE8_9PHAE1.730e-1831.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA2.220e-1830.81Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6H5JFZ2_9PHAE2.780e-1832.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..169
e-value: 1.2E-22
score: 80.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3045contigH-paniculata_contig3045:99..608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3045.8249.1mRNA_H-paniculata_contig3045.8249.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3045 99..911 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3045.8249.1 ID=prot_H-paniculata_contig3045.8249.1|Name=mRNA_H-paniculata_contig3045.8249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLD
KAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIII
YADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRK
INIDQHLYARSMAERFGITK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2