prot_H-paniculata_contig30432.8246.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30432.8246.1
Unique Nameprot_H-paniculata_contig30432.8246.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length191
Homology
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.080e-72
Identity = 139/190 (73.16%), Postives = 151/190 (79.47%), Query Frame = 0
Query:    3 LSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRKLEAELQEGI-DESAAAVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVALVRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGXXXXXXXXTGAYSAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV 191
            LS AVLERFETAVL+MDE GIAAACPLLAPLGLAT+GQELYLGFARR LEAEL+ G  D S  A   LPAIYN SAAFLRRQVPVAAAGL+PCLGDVALVRVVT+ECGDRAA VLE +LR+  VA+WAA G E  AA               A +A+ LG+ADALLEELAVLTQHTESYDRFV+FLV EV
Sbjct:  222 LSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGVEGAAA---------------AAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEV 396          
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.750e-25
Identity = 76/206 (36.89%), Postives = 104/206 (50.49%), Query Frame = 0
Query:    1 ARLSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRKLEAELQEGIDESAA--AVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVALVRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGXXXXXXXXTGAY-------------SAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV 191
            ARL   VL R   AV   +   +   CPLL PLGLA +G  +Y  FA R L+  L   + E++   AV  LP IYN +A FL+R +P+ + G      DV+L+R+V +EC D A  V+  +L  K VA    A AEA     G           G +              A  +G+ D L++ LA++ QHTESYDRF+R +  EV
Sbjct:  235 ARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDGLDGGAFHARKEGGHRRRGAQASGGEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEV 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE3.080e-7273.16Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA8.750e-2536.89Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30432contigH-paniculata_contig30432:980..1957 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30432.8246.1mRNA_H-paniculata_contig30432.8246.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30432 980..1957 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30432.8246.1 ID=prot_H-paniculata_contig30432.8246.1|Name=mRNA_H-paniculata_contig30432.8246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
ARLSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRK
LEAELQEGIDESAAAVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVAL
VRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGGGGDGGG
GTGAYSAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV
back to top