mRNA_H-paniculata_contig30432.8246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30432.8246.1
Unique NamemRNA_H-paniculata_contig30432.8246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.080e-72
Identity = 139/190 (73.16%), Postives = 151/190 (79.47%), Query Frame = 1 
Query:    7 LSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRKLEAELQEGI-DESAAAVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVALVRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGXXXXXXXXTGAYSAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV 573
            LS AVLERFETAVL+MDE GIAAACPLLAPLGLAT+GQELYLGFARR LEAEL+ G  D S  A   LPAIYN SAAFLRRQVPVAAAGL+PCLGDVALVRVVT+ECGDRAA VLE +LR+  VA+WAA G E  AA               A +A+ LG+ADALLEELAVLTQHTESYDRFV+FLV EV
Sbjct:  222 LSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGVEGAAA---------------AAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEV 396
[Close]
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.750e-25
Identity = 76/206 (36.89%), Postives = 104/206 (50.49%), Query Frame = 1 
Query:    1 ARLSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRKLEAELQEGIDESAA--AVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVALVRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGXXXXXXXXTGAY-------------SAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV 573
            ARL   VL R   AV   +   +   CPLL PLGLA +G  +Y  FA R L+  L   + E++   AV  LP IYN +A FL+R +P+ + G      DV+L+R+V +EC D A  V+  +L  K VA    A AEA     G           G +              A  +G+ D L++ LA++ QHTESYDRF+R +  EV
Sbjct:  235 ARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDGLDGGAFHARKEGGHRRRGAQASGGEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30432.8246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE3.080e-7273.16Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA8.750e-2536.89Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30432contigH-paniculata_contig30432:980..1957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue2.5e-61
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.3355503-CDS-H-paniculata_contig30432:979..13071622929934.3355503-CDS-H-paniculata_contig30432:979..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30432 980..1307 -
1691481076.303616-CDS-H-paniculata_contig30432:979..13071691481076.303616-CDS-H-paniculata_contig30432:979..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30432 980..1307 -
1622929934.3490674-CDS-H-paniculata_contig30432:1712..19571622929934.3490674-CDS-H-paniculata_contig30432:1712..1957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30432 1713..1957 -
1691481076.3134897-CDS-H-paniculata_contig30432:1712..19571691481076.3134897-CDS-H-paniculata_contig30432:1712..1957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30432 1713..1957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30432.8246.1prot_H-paniculata_contig30432.8246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30432 980..1957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30432.8246.1

>prot_H-paniculata_contig30432.8246.1 ID=prot_H-paniculata_contig30432.8246.1|Name=mRNA_H-paniculata_contig30432.8246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
ARLSLAVLERFETAVLEMDERGIAAACPLLAPLGLATQGQELYLGFARRK
LEAELQEGIDESAAAVHRLPAIYNVSAAFLRRQVPVAAAGLSPCLGDVAL
VRVVTKECGDRAANVLESYLRQKKVANWAAAGAEAWAAGGGEGGGGDGGG
GTGAYSAKTLGQADALLEELAVLTQHTESYDRFVRFLVEEV
back to top

mRNA from alignment at H-paniculata_contig30432:980..1957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30432.8246.1 ID=mRNA_H-paniculata_contig30432.8246.1|Name=mRNA_H-paniculata_contig30432.8246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=978bp|location=Sequence derived from alignment at H-paniculata_contig30432:980..1957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGTTGTCCTTGGCTGTGCTTGAGCGCTTCGAGACTGCCGTCCTGGA
GATGGACGAAAGAGGCATCGCCGCTGCTTGTCCCCTGCTCGCTCCGCTGG
GGTTAGCGACACAGGGGCAGGAGCTGTACCTGGGCTTCGCGAGGAGAAAG
CTGGAGGCAGAATTGCAAGAGGGGATCGATGAGTCGGCCGCTGCCGTGCA
TCGCCTTCCCGCTATCTACAACGTCTCCGCGGCGTTTTTGCGACGGTGTG
TGATGTGTGTTGTGGGAGAGCGGGGAGGGAGAGCGTTTTTTTTTCGGGGA
GGGGCGGCAAACACATTCGCCAGAGGTAGATCGTTTGTACTCCTTTGTTA
TATGTTTTTATCGGAGTATTTGTCTATCTCGATGCTGTATTTGTATCTTA
CGTATCTCCATCTCTCATTTTCTCCCTCCACTCTCTCCATGCGATTGGCT
ATAATCGGAAATCACTCTGACAGGAACAAAGGTCCGTTATCCCGAGGACG
CGCAGGCAGTCAATGGCCCAACAATTAACTGCGGCATGCAACACATCGGT
ACGCCCCCTCACCCCCCCTATCCATTCCGTTCCTCATATATCAAAAGCAT
GCCCTGCCTCAAGTTCTGACATGCACGACCCTCCTCATGTGACAACACAG
GCAAGTTCCGGTAGCAGCCGCCGGGTTATCGCCCTGCCTAGGAGATGTCG
CCCTCGTTCGCGTTGTAACGAAGGAATGCGGAGATCGCGCGGCAAACGTC
TTGGAATCGTATCTCCGACAAAAGAAGGTGGCTAACTGGGCGGCCGCTGG
CGCCGAGGCGTGGGCGGCAGGTGGGGGGGAGGGAGGCGGGGGAGACGGGG
GGGGGGGAACGGGAGCGTATAGCGCCAAGACGTTGGGGCAGGCGGACGCG
CTGTTGGAGGAGCTGGCGGTGTTGACGCAGCACACGGAGAGCTACGACCG
ATTCGTGCGGTTTTTGGTAGAGGAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30432:980..1957-

>mRNA_H-paniculata_contig30432.8246.1 ID=mRNA_H-paniculata_contig30432.8246.1|Name=mRNA_H-paniculata_contig30432.8246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig30432:980..1957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGTTGTCCTTGGCTGTGCTTGAGCGCTTCGAGACTGCCGTCCTGGA
GATGGACGAAAGAGGCATCGCCGCTGCTTGTCCCCTGCTCGCTCCGCTGG
GGTTAGCGACACAGGGGCAGGAGCTGTACCTGGGCTTCGCGAGGAGAAAG
CTGGAGGCAGAATTGCAAGAGGGGATCGATGAGTCGGCCGCTGCCGTGCA
TCGCCTTCCCGCTATCTACAACGTCTCCGCGGCGTTTTTGCGACGGCCAG
GTTGTCCTTGGCTGTGCTTGAGCGCTTCGAGACTGCCGTCCTGGAGATGG
ACGAAAGAGGCATCGCCGCTGCTTGTCCCCTGCTCGCTCCGCTGGGGTTA
GCGACACAGGGGCAGGAGCTGTACCTGGGCTTCGCGAGGAGAAAGCTGGA
GGCAGAATTGCAAGAGGGGATCGATGAGTCGGCCGCTGCCGTGCATCGCC
TTCCCGCTATCTACAACGTCTCCGCGGCGTTTTTGCGACGGCAAGTTCCG
GTAGCAGCCGCCGGGTTATCGCCCTGCCTAGGAGATGTCGCCCTCGTTCG
CGTTGTAACGAAGGAATGCGGAGATCGCGCGGCAAACGTCTTGGAATCGT
ATCTCCGACAAAAGAAGGTGGCTAACTGGGCGGCCGCTGGCGCCGAGGCG
TGGGCGGCAGGTGGGGGGGAGGGAGGCGGGGGAGACGGGGGGGGGGGAAC
GGGAGCGTATAGCGCCAAGACGTTGGGGCAGGCGGACGCGCTGTTGGAGG
AGCTGGCGGTGTTGACGCAGCACACGGAGAGCTACGACCGATTCGTGCGG
TTTTTGGTAGAGGAGGTGGCAAGTTCCGGTAGCAGCCGCCGGGTTATCGC
CCTGCCTAGGAGATGTCGCCCTCGTTCGCGTTGTAACGAAGGAATGCGGA
GATCGCGCGGCAAACGTCTTGGAATCGTATCTCCGACAAAAGAAGGTGGC
TAACTGGGCGGCCGCTGGCGCCGAGGCGTGGGCGGCAGGTGGGGGGGAGG
GAGGCGGGGGAGACGGGGGGGGGGGAACGGGAGCGTATAGCGCCAAGACG
TTGGGGCAGGCGGACGCGCTGTTGGAGGAGCTGGCGGTGTTGACGCAGCA
CACGGAGAGCTACGACCGATTCGTGCGGTTTTTGGTAGAGGAGGTG
back to top