mRNA_H-paniculata_contig30426.8244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30426.8244.1
Unique NamemRNA_H-paniculata_contig30426.8244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A6H5L4B0_9PHAE (Putative_PNPOx domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.780e-19
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            YP GSVVGFSLD+KGRPLFAFSSMSAHTGDL  DSR SLTVT+ATF+
Sbjct:   20 YPSGSVVGFSLDEKGRPLFAFSSMSAHTGDLAADSRVSLTVTAATFK 66
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: D7FZW7_ECTSI (DUF2470 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.260e-18
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            YP GSVVGFSLDDKGRPLFAFSSMSAHTGDL  DSR SLTVT+ATF+
Sbjct:   87 YPSGSVVGFSLDDKGRPLFAFSSMSAHTGDLAADSRVSLTVTAATFK 133
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A836CG39_9STRA (DUF2470 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG39_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.960e-13
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            YP GSVVGF LDD GRPLFAFS+MSAHT DL  D RAS+T+ +A F+
Sbjct:   71 YPNGSVVGFGLDDAGRPLFAFSTMSAHTSDLGADGRASMTIMAANFK 117
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A1Q9D8F9_SYMMI (Putative_PNPOx domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D8F9_SYMMI)

HSP 1 Score: 67.4 bits (163), Expect = 5.780e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            +PGGSVVGF+ D+KGRPLF+FSSMS+HT DL+ D R SLTV +  F+
Sbjct:  135 FPGGSVVGFAPDEKGRPLFSFSSMSSHTQDLIKDKRCSLTVAAKEFK 181
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A813AVT9_SYMMI (Lrrc6 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813AVT9_SYMMI)

HSP 1 Score: 67.4 bits (163), Expect = 9.390e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            +PGGSVVGF+ D+KGRPLF+FSSMS+HT DL+ D R SLTV +  F+
Sbjct:  115 FPGGSVVGFAPDEKGRPLFSFSSMSSHTQDLIKDKRCSLTVAAKEFK 161
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A7S3SQ04_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SQ04_9SPIT)

HSP 1 Score: 64.3 bits (155), Expect = 1.660e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            +P GS+VGF+ D+KGRP+F FS MS+HTG++V DSRASL VT   F+
Sbjct:    7 FPVGSIVGFATDEKGRPIFCFSGMSSHTGNVVKDSRASLCVTEQDFR 53
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A7S4MBI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBI9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.750e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            YPGGSVVGF+ D+KGRP F FS MS HT D++ D R SLT+ S  F+
Sbjct:   80 YPGGSVVGFAPDEKGRPFFVFSGMSTHTQDILADPRCSLTIASKDFK 126
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A812L4Z4_9DINO (Lrrc6 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812L4Z4_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            +PGGSVVGF+ D+KGRPLF+FSSMS+HT DL+ D R SLTV +  F+
Sbjct:  111 FPGGSVVGFAPDEKGRPLFSFSSMSSHTQDLMKDKRCSLTVAAKEFK 157
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A7S1U7L0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATFQ 162
            YPGGSVVGF++++ G  +F+FS MS+HT DL+ D RASLTVT+ TFQ
Sbjct:  155 YPGGSVVGFAMEEAGTAIFSFSGMSSHTQDLLKDGRASLTVTAKTFQ 201
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BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Match: A0A7S0DCY3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DCY3_MICPS)

HSP 1 Score: 65.1 bits (157), Expect = 4.970e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   22 YPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTSATF 159
            YP GS+VGF+ DDKGRP+FA SSMS HTGDL  +   SLTVT+  F
Sbjct:  105 YPSGSIVGFAADDKGRPIFAMSSMSGHTGDLAANGNCSLTVTAPGF 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30426.8244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4B0_9PHAE3.780e-1985.11Putative_PNPOx domain-containing protein n=1 Tax=E... [more]
D7FZW7_ECTSI6.260e-1887.23DUF2470 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CG39_9STRA7.960e-1370.21DUF2470 domain-containing protein n=1 Tax=Tribonem... [more]
A0A1Q9D8F9_SYMMI5.780e-1265.96Putative_PNPOx domain-containing protein n=1 Tax=S... [more]
A0A813AVT9_SYMMI9.390e-1265.96Lrrc6 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A7S3SQ04_9SPIT1.660e-1161.70Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4MBI9_9STRA1.750e-1161.70Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A812L4Z4_9DINO1.750e-1165.96Lrrc6 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A7S1U7L0_9STRA2.970e-1163.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0DCY3_MICPS4.970e-1165.22Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30426contigH-paniculata_contig30426:2480..2641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FZW7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF2470)
EggNOG OGs2QV7B@2759,COG0748@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.1356554-CDS-H-paniculata_contig30426:2479..26411622929934.1356554-CDS-H-paniculata_contig30426:2479..2641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30426 2480..2641 -
1691481076.2050898-CDS-H-paniculata_contig30426:2479..26411691481076.2050898-CDS-H-paniculata_contig30426:2479..2641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30426 2480..2641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30426.8244.1prot_H-paniculata_contig30426.8244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30426 2480..2641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30426.8244.1

>prot_H-paniculata_contig30426.8244.1 ID=prot_H-paniculata_contig30426.8244.1|Name=mRNA_H-paniculata_contig30426.8244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MCHSPYRYPGGSVVGFSLDDKGRPLFAFSSMSAHTGDLVHDSRASLTVTS
ATFQ
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mRNA from alignment at H-paniculata_contig30426:2480..2641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30426.8244.1 ID=mRNA_H-paniculata_contig30426.8244.1|Name=mRNA_H-paniculata_contig30426.8244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig30426:2480..2641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCATTCTCCTTACAGGTACCCGGGAGGCTCGGTGGTTGGCTTTTC
ACTCGATGATAAGGGACGTCCACTGTTCGCGTTTTCCTCCATGAGCGCGC
ACACGGGCGATCTCGTCCATGACTCCCGGGCCAGCCTTACTGTAACATCG
GCCACCTTTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig30426:2480..2641-

>mRNA_H-paniculata_contig30426.8244.1 ID=mRNA_H-paniculata_contig30426.8244.1|Name=mRNA_H-paniculata_contig30426.8244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig30426:2480..2641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCATTCTCCTTACAGGTACCCGGGAGGCTCGGTGGTTGGCTTTTC
ACTCGATGATAAGGGACGTCCACTGTTCGCGTTTTCCTCCATGAGCGCGC
ACACGGGCGATCTCGTCCATGACTCCCGGGCCAGCCTTACTGTAACATCG
GCCACCTTTCAGATGTGTCATTCTCCTTACAGGTACCCGGGAGGCTCGGT
GGTTGGCTTTTCACTCGATGATAAGGGACGTCCACTGTTCGCGTTTTCCT
CCATGAGCGCGCACACGGGCGATCTCGTCCATGACTCCCGGGCCAGCCTT
ACTGTAACATCGGCCACCTTTCAG
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