mRNA_H-paniculata_contig30421.8243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30421.8243.1
Unique NamemRNA_H-paniculata_contig30421.8243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 8.510e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  234 FIQDRREQVKLDNPDIAFMQQQKIMSEIWKTMSGDEREAYRSRARDDQKRYK 389
            FIQ+RREQVK DNPDIA  QQQKIMSEIWKT++ DEREAYR+RARDDQKRYK
Sbjct:  150 FIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYK 201
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.250e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  234 FIQDRREQVKLDNPDIAFMQQQKIMSEIWKTMSGDEREAYRSRARDDQKRYK 389
            FIQ+RREQVK DNPDIA  QQQKIMSEIWKT++ DEREAYR+RARDDQKRYK
Sbjct:  257 FIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYK 308
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: D8LKT3_ECTSI (APH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT3_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.070e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADA 124
            FHPTE+RVIAVLDWELSTLGH LADLANLCILHHLPA+A A
Sbjct:  229 FHPTESRVIAVLDWELSTLGHPLADLANLCILHHLPASAVA 269
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A6H5L392_9PHAE (APH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L392_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.340e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADA 124
            FHP E RVIAVLDWELSTLGH LADLANLCILHHLPA+A A
Sbjct:  292 FHPAEPRVIAVLDWELSTLGHPLADLANLCILHHLPASAAA 332
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A8C2UZR9_CHILA (Acyl-CoA dehydrogenase family member 11 n=2 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2UZR9_CHILA)

HSP 1 Score: 65.9 bits (159), Expect = 5.740e-10
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADAATRGIH 142
            FHPTEARVIAVLDWELST+GH L+DLA+LC+ +  P       RG H
Sbjct:  231 FHPTEARVIAVLDWELSTIGHPLSDLAHLCLFYFWPRTLPMINRGSH 277
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A448YZL2_9STRA (APH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZL2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.590e-10
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADAATRGI 139
            FHPTE RVIAVLDWELST+G +L DLANLC+++ +P +  AA  G+
Sbjct:  259 FHPTEPRVIAVLDWELSTVGDSLCDLANLCVMYLMPQSKKAAISGV 304
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: UPI00192AFF02 (phosphotransferase family protein n=4 Tax=Skermanella TaxID=204447 RepID=UPI00192AFF02)

HSP 1 Score: 64.7 bits (156), Expect = 1.190e-9
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADAAT 130
            FHPTE RV+AVLDWELSTLGH LADLA  C++ HLPA   A T
Sbjct:  226 FHPTEPRVLAVLDWELSTLGHPLADLAYNCMIWHLPAGQRALT 268
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A8J3E3V5_9PROT (Aminoglycoside phosphotransferase n=2 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E3V5_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 3.050e-9
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAA-------DAATRGI 139
            FHPTE RVIA+LDWELSTLGH LADLA  CI +H+P+         D A  GI
Sbjct:  232 FHPTEPRVIAILDWELSTLGHPLADLAYNCIAYHMPSGTMGGIADLDIAAEGI 284
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A645GG47_9ZZZZ (APH domain-containing protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645GG47_9ZZZZ)

HSP 1 Score: 62.8 bits (151), Expect = 3.070e-9
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADAATRGI 139
            FHPTE RVIAVLDWELSTLGH LAD A  C+  H+PAA      G+
Sbjct:  113 FHPTEPRVIAVLDWELSTLGHPLADFAYHCMSWHIPAALGRGIAGL 158
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BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Match: A0A2P6NMN7_9EUKA (APH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NMN7_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.270e-9
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:    2 FHPTEARVIAVLDWELSTLGHALADLANLCILHHLPAAADAATRGIHHHTRRAINESQE 178
            FHPTEARVI +LDWELST+GH L+D+ANLC  + LP    AA  G   H    I + +E
Sbjct:  264 FHPTEARVIGILDWELSTIGHPLSDVANLCHPYSLPYFKGAANSGFVGHEVEGIPKLEE 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30421.8243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P1_ECTSI8.510e-1984.62HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV94_9PHAE2.250e-1884.62HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D8LKT3_ECTSI2.070e-1490.24APH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L392_9PHAE1.340e-1387.80APH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8C2UZR9_CHILA5.740e-1063.83Acyl-CoA dehydrogenase family member 11 n=2 Tax=Ch... [more]
A0A448YZL2_9STRA9.590e-1063.04APH domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
UPI00192AFF021.190e-972.09phosphotransferase family protein n=4 Tax=Skermane... [more]
A0A8J3E3V5_9PROT3.050e-960.38Aminoglycoside phosphotransferase n=2 Tax=Aliidong... [more]
A0A645GG47_9ZZZZ3.070e-965.22APH domain-containing protein n=1 Tax=bioreactor m... [more]
A0A2P6NMN7_9EUKA3.270e-954.24APH domain-containing protein n=1 Tax=Planoprotost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30421contigH-paniculata_contig30421:293..2024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 orthologEc-11_002940.1
Exons2
Model size391
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30421.8243.1prot_H-paniculata_contig30421.8243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30421 412..2024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.0466115-UTR-H-paniculata_contig30421:292..4111622929934.0466115-UTR-H-paniculata_contig30421:292..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30421 293..411 +
1691481076.173578-UTR-H-paniculata_contig30421:292..4111691481076.173578-UTR-H-paniculata_contig30421:292..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30421 293..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.0688174-CDS-H-paniculata_contig30421:411..5941622929934.0688174-CDS-H-paniculata_contig30421:411..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30421 412..594 +
1691481076.186951-CDS-H-paniculata_contig30421:411..5941691481076.186951-CDS-H-paniculata_contig30421:411..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30421 412..594 +
1622929934.0874233-CDS-H-paniculata_contig30421:1937..20241622929934.0874233-CDS-H-paniculata_contig30421:1937..2024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30421 1938..2024 +
1691481076.1960347-CDS-H-paniculata_contig30421:1937..20241691481076.1960347-CDS-H-paniculata_contig30421:1937..2024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30421 1938..2024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30421.8243.1

>prot_H-paniculata_contig30421.8243.1 ID=prot_H-paniculata_contig30421.8243.1|Name=mRNA_H-paniculata_contig30421.8243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MRPPEVSTTIPEERSTNHRRVGAERVDGVGSKFWWRGSFIQDRREQVKLD
NPDIAFMQQQKIMSEIWKTMSGDEREAYRSRARDDQKRYK
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mRNA from alignment at H-paniculata_contig30421:293..2024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30421.8243.1 ID=mRNA_H-paniculata_contig30421.8243.1|Name=mRNA_H-paniculata_contig30421.8243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1732bp|location=Sequence derived from alignment at H-paniculata_contig30421:293..2024+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCACCCCACAGAAGCCCGAGTAATCGCCGTATTGGACTGGGAACTGT
CGACGCTTGGTCACGCCCTGGCGGACCTTGCTAACCTGTGCATCTTGCAC
CACCTTCCAGCGGCGGCAGATGCGGCCACCAGAGGTATCCACCACCATAC
CAGAAGAGCGATCAACGAATCACAGGAGAGTGGGAGCGGAGAGGGTAGAC
GGGGTGGGCTCGAAATTTTGGTGGAGAGGCTCGTTCATCCAGGACAGGCG
GGAACAAGTGAAGCTCGACAATCCTGACATCGCCTTTATGCAGCAGCAAA
AGGCGAGCAGTGGGATTCAGTATATTTATTTGCGTCACGGAGGGGCGTAG
ATGGCAGGGTTCAAATACAATGCAACGGTATTGTTGTCCATTGGGTTTTT
GCTATAGTTGTAGTTGCTGCGTGTTTCGTGTCACAATATGTACAACTCGT
TATGTATTTGCCCCTTGTCCGTGCCTTTCCACTCCCTTGCTCCGTCCTCT
CGGGAAAACGTGGTTAATGGTTTAATAACGATGGCAGGTAGAACATGAGT
ACCCCTAAGTTTGTTTAGTTTGTGGCAGCTTGAAGATGCTGAGCATACGT
CCGTTTTGTGTTACGATGGTTGTCATGTTGTCTTCCAGTACAGTAAGTTG
TGTATACTTGCTTGTACGTTTGACTTGCTATTTACTCTCAAGATACAATT
CCAAAGTGCACTTTCGTAGTGTAGACGCCGTCCTCCTGACGAAACTGTCC
TGGCCATTTGATGCGTGTGATGATGTCGCTATCACTTATCATGTGGTCTG
TAGATTTTGCTTCAGTCTCTACCATGTTACGCACACAATTTATCAAATCC
AATTCGTTTATTCACCTGCACGAAGTAGTCGTAGTAGTAGTAGAGGGGCG
GCGGAAGCATAGTGTAAGCGAGAGGGGAGCAAGCACTTGTTTGTGTGCAG
CACTCCTGGCCAAGCGAAGACCAATCTAGAACAAACGTGCCGGCCTGAAC
TCCATACTTTTGAGCTTCGGTTACCAATATGGAGTGATACAATACTCAAG
TATGGAAGCATCGGTAAAGGTTTTTGCCTCAGCCTTTCGGGGGTTAAAAA
TAAAATAATAATAACAATAAAAAGGGAGTGATACACACAGACAGGTTTGC
TTTTTGCGTCCTTATCCATATCTTTACTTTTTAGCTAATAGTCATCCTGC
ATCGCACTTTGGATCTTCATTGTGTATTCTCACCTGTGCACCCTTCCAGT
TCCTATGATACAATTGACCGTCGTATACCACCTGAATTTACCTCACAAGA
TATTGCCTGATTGGCTATGTACCGTGAACGCTATTACGAAGTCGTTGCTT
TTGGTCGTCCTCGTCCGATATACAACAAATTAGCATAGTTCCAAACAACG
GTTCCATTTTTTTTCCTTCTCAATCTTTTGATCGAATTGTTCAAGAACCC
ATTTTTTTAATGTTTTTTTCATTAATAGTCTTTTTTTTTTCTTCACGTGA
GTGTTTCTCGAAAATGTTACCCTATCGCAAGATTTTATTTGATGCCAGGA
TATGATCATTCCCTCCCTCCTTCCCTACATCCCTCCGCCGCGGCCGCCGC
ATCTGAATTTTTTTCTGTTTTCTGAAAAAAACAAAAAATCGGAAGATCAT
GAGCGAGATCTGGAAAACGATGTCTGGAGACGAGAGAGAGGCTTATCGTT
CCAGGGCACGGGACGACCAGAAGCGGTATAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig30421:293..2024+

>mRNA_H-paniculata_contig30421.8243.1 ID=mRNA_H-paniculata_contig30421.8243.1|Name=mRNA_H-paniculata_contig30421.8243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig30421:293..2024+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCCACCAGAGGTATCCACCACCATACCAGAAGAGCGATCAACGAA
TCACAGGAGAGTGGGAGCGGAGAGGGTAGACGGGGTGGGCTCGAAATTTT
GGTGGAGAGGCTCGTTCATCCAGGACAGGCGGGAACAAGTGAAGCTCGAC
AATCCTGACATCGCCTTTATGCAGCAGCAAAAGATGCGGCCACCAGAGGT
ATCCACCACCATACCAGAAGAGCGATCAACGAATCACAGGAGAGTGGGAG
CGGAGAGGGTAGACGGGGTGGGCTCGAAATTTTGGTGGAGAGGCTCGTTC
ATCCAGGACAGGCGGGAACAAGTGAAGCTCGACAATCCTGACATCGCCTT
TATGCAGCAGCAAAAGATCATGAGCGAGATCTGGAAAACGATGTCTGGAG
ACGAGAGAGAGGCTTATCGTTCCAGGGCACGGGACGACCAGAAGCGGTAT
AAAATCATGAGCGAGATCTGGAAAACGATGTCTGGAGACGAGAGAGAGGC
TTATCGTTCCAGGGCACGGGACGACCAGAAGCGGTATAAA
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