mRNA_H-paniculata_contig3042.8241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3042.8241.1
Unique NamemRNA_H-paniculata_contig3042.8241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3042.8241.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.640e-6
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    4 EAWSRVRGRG---RSVRHQ-ARIRPT-LGPGASPSSTPRNDLKAGLMDESGLEGVDFLSSAGGTGSLFDGFCSPLSEYNGA 231
            E W+ VR      RS RH   RI+PT + P   PS+ P+    A   D+SGL GV  LSS GGTG+L D FCSPLSE   A
Sbjct:  435 EGWAPVRALRAPPRSYRHNHPRIQPTHVSPRVGPSNPPQKPPPA---DDSGLGGVQLLSSPGGTGAL-DAFCSPLSEATAA 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3042.8241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4C8_9PHAE2.640e-649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3042contigH-paniculata_contig3042:1755..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.991751-CDS-H-paniculata_contig3042:1755..18701622929933.991751-CDS-H-paniculata_contig3042:1755..1870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3042 1756..1870 -
1691481076.143417-CDS-H-paniculata_contig3042:1755..18701691481076.143417-CDS-H-paniculata_contig3042:1755..1870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3042 1756..1870 -
1622929934.005611-CDS-H-paniculata_contig3042:2853..29691622929934.005611-CDS-H-paniculata_contig3042:2853..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3042 2854..2969 -
1691481076.155267-CDS-H-paniculata_contig3042:2853..29691691481076.155267-CDS-H-paniculata_contig3042:2853..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3042 2854..2969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3042.8241.1prot_H-paniculata_contig3042.8241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3042 1756..2969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3042.8241.1

>prot_H-paniculata_contig3042.8241.1 ID=prot_H-paniculata_contig3042.8241.1|Name=mRNA_H-paniculata_contig3042.8241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
TEAWSRVRGRGRSVRHQARIRPTLGPGASPSSTPRNDLKAGLMDESGLEG
VDFLSSAGGTGSLFDGFCSPLSEYNGA
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mRNA from alignment at H-paniculata_contig3042:1755..2969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3042.8241.1 ID=mRNA_H-paniculata_contig3042.8241.1|Name=mRNA_H-paniculata_contig3042.8241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1215bp|location=Sequence derived from alignment at H-paniculata_contig3042:1755..2969- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGAGGCATGGTCAAGGGTGAGGGGGAGAGGGCGCAGCGTTCGGCATCA
GGCGCGAATTCGTCCAACGCTCGGCCCCGGGGCTTCTCCGAGCTCGACAC
CCAGGAATGATCTGAAGTGAGAAGATGTTTAGTTCATTTGTTCTGTTTTT
TCCCGTTGGCTTGCTTTAGACTTGTCTTTTTGAGGCAGCCGTATTTTTGT
GCCGTTTATTTGTCGGATTCCGCTTTCTTGTGTGTATATATATATATATT
CGGTTATTCGTCGATCATGCTGCTACTACTACTACTACAGAGTAGAGCAA
AAGTTCGTTTTTGGTTTGTTAGTTTTTTAAAAGTTTAAGTTTAACCATAT
AGATATAACGGGAGTAGAGTGGTGTGCACGGAGACAAGGCAGACAGACAG
TACGGCACAGCACAGCACAGCACGTAATATATGTCTGTGCTGTGAGACCG
GGGGGGAGATGTTATAACAGAGAGAGAGAGGGAGAGAGAGAGAGAGCACC
ATTTTTTCGTTTTTTTTATATGCAATGGTTTCATCACTCAGAATAGAGTT
AATTAGAATGCATGTTCCTCCCGCAGACATCGTACCTCCGCAGCATGTGC
GAACACAGTTAGAGTTTGTGGGTGGGTCATGCGTTTTTGAATAGTTGGAT
ACGAGGATGCAAGACGGACTGCACGGGCGTGGCCATGGCTCTAATAATCC
CGCCACCAATCTGAATTAATTTGTTTTTTCTAGTCTGGCGTTGTTTTGTA
GTTTGGGAGCATCGAATAAAAAACAAAAAAATCAATCCCATTAACTCTTC
TAACGCTGGATAGAAGACGTGAAGGTTAATCGAGCAATTCTGATCTGTTA
CCGTGCAGCCGTTATTCATATAATTGAATTGTGTCAATTTCCTATCTTTC
AGAATGTATTTATTTTTCATTTTTTATTAGGTGCAGAATAATAATGTGAA
TGTAAAATATAGGAATGATTTTACAAACGAAAGAGGAATGAAAAATAAGA
TGAACGAACGAACGGTGTATGAACTAAACATACCGCGTAGCAGATTTTTT
TATAACTGTTTTTTATGAATGGGTTCTCTCTTGATCATTTCTTGTCCAGG
GCGGGTTTGATGGACGAGAGCGGGCTCGAAGGAGTAGATTTTCTGTCGTC
GGCCGGTGGCACCGGGAGCCTGTTTGATGGGTTTTGCTCTCCGCTTTCGG
AGTACAACGGAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3042:1755..2969-

>mRNA_H-paniculata_contig3042.8241.1 ID=mRNA_H-paniculata_contig3042.8241.1|Name=mRNA_H-paniculata_contig3042.8241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig3042:1755..2969- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGAGGCATGGTCAAGGGTGAGGGGGAGAGGGCGCAGCGTTCGGCATCA
GGCGCGAATTCGTCCAACGCTCGGCCCCGGGGCTTCTCCGAGCTCGACAC
CCAGGAATGATCTGAAACCGAGGCATGGTCAAGGGTGAGGGGGAGAGGGC
GCAGCGTTCGGCATCAGGCGCGAATTCGTCCAACGCTCGGCCCCGGGGCT
TCTCCGAGCTCGACACCCAGGAATGATCTGAAGGCGGGTTTGATGGACGA
GAGCGGGCTCGAAGGAGTAGATTTTCTGTCGTCGGCCGGTGGCACCGGGA
GCCTGTTTGATGGGTTTTGCTCTCCGCTTTCGGAGTACAACGGAGCGGGC
GGGTTTGATGGACGAGAGCGGGCTCGAAGGAGTAGATTTTCTGTCGTCGG
CCGGTGGCACCGGGAGCCTGTTTGATGGGTTTTGCTCTCCGCTTTCGGAG
TACAACGGAGCG
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