mRNA_H-paniculata_contig304.8238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig304.8238.1 vs. uniprot
Match: D8LMH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH8_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 5.600e-10 Identity = 75/277 (27.08%), Postives = 113/277 (40.79%), Query Frame = 1
Query: 1579 PGCAPAIFLRVHPSPSDSPEKDSNASXXXXXXXXXXX-----AAEVLEAGAGGGATVGYLEAAKNNPENDPGTSLDNDLESDRGVDGDTVEQVREKHPHGLHHHVSALSSSNILKTEQQQGVDDKXXXXXXXEAEIAMCLWVDQPGSGAGDDLVTK-----GRARAVLQEVRSRVSHLRCLQGDILKPAPAGGVILRARYNPDANGLPIMVVSTKIRLLKGGAPRVYRVILQPGLGCCVGFCSTHDIGTGEAGKVWEDAGFSQVTQRGEYEGSRAGE 2379
PG P IFL + PSP +P+ + AS A+ E G T +++ + N E G L G V E G+ +S+ ++ + +++ XXXXXXX AE+ M LW DQPG+ D+ TK A LQEV V + KP P G +I+R +++ + NGLP T ++ KVWE+AG++QVT+ G+Y+G+R+ E
Sbjct: 6 PGSPPPIFLVITPSPRSAPKITTTASSMRQSADRDAPDGEKTIAQEREPEPGDSKTENEMDSHRRNEET--GELLGEGPPXXXAAAGAVASAVSEMSRGGVVESPPEMSAGCGVQRSSGERLEEXXXXXXXXXAEVLMNLWADQPGA----DITTKKADWNASAMVALQEVLPGVPEGLHTSAESFKPVPGGRLIMRVKHDLEPNGLPF---------------------------------------TAKSAKVWEEAGYNQVTETGKYDGARSIE 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig304.8238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig304.8238.1 >prot_H-paniculata_contig304.8238.1 ID=prot_H-paniculata_contig304.8238.1|Name=mRNA_H-paniculata_contig304.8238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp MRRGKEGQAMNSTTSASAPGSTPTLPTPTLRWVTRAAIEQSGGVVVAALTback to top mRNA from alignment at H-paniculata_contig304:13437..40693+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig304.8238.1 ID=mRNA_H-paniculata_contig304.8238.1|Name=mRNA_H-paniculata_contig304.8238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=27257bp|location=Sequence derived from alignment at H-paniculata_contig304:13437..40693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig304:13437..40693+ >mRNA_H-paniculata_contig304.8238.1 ID=mRNA_H-paniculata_contig304.8238.1|Name=mRNA_H-paniculata_contig304.8238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig304:13437..40693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |