mRNA_H-paniculata_contig304.8237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig304.8237.1
Unique NamemRNA_H-paniculata_contig304.8237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: D8LKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS0_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 3.520e-56
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 SYALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKPIKAAILESAAAK 321
            S+AL+EVHFRPGLYICEEGKPG+SF+IITSG CRVTI+DPNA  Q+REVTKLHQDDFFGEVAL+E+GLR+ATVVAETDVT LSLTRRHFDLYLKPIKAAILESAAAK
Sbjct:  141 SHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKPIKAAILESAAAK 247
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.010e-35
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    7 ALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKPIK 291
            ALVE+ FRPG YICE+GKPGNSFYII  G C+VT++DP+   QQREVTKLH  DFFGEVAL+E  +R+A+VVAET V  LSLTRRHF+ +L  IK
Sbjct:  496 ALVEMSFRPGAYICEQGKPGNSFYIIVEGVCKVTVHDPSVPGQQREVTKLHASDFFGEVALIEKSMRTASVVAETVVRCLSLTRRHFETHLSGIK 590
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A7S2G2W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2W4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.360e-23
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:   10 LVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALM-ETGLRSATVVAETDVTTLSLTRRHFDLYLKPIKAAILESAAAK 321
            +  +H+    YIC +G  GN+F+II  G CRVTI DP     +REV  LH DD+FGEVAL+ E+  R+A V++ET VTT+S+TR  F+ +L+ I+  ++E +A K
Sbjct:  332 MTSMHYARNTYICAQGDHGNTFHIIVEGICRVTIADPECPGSEREVANLHADDYFGEVALLDESTKRTANVISETAVTTMSMTRFAFNHFLQSIRPMLMEHSALK 436
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A482T0W6_9ARCH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0W6_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 3.310e-18
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    7 ALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALME-TGLRSATVVAETDVTTLSLTRRHFDLYLKPIKAAILESAAAK 321
            A++ + + PG YIC +G  GNSF+I+T G CRVTIN   +   +R+V  L   DFFGEVAL+E +  R+A V++   V+ L+L+R  F+  L+ +K  I+E  A +
Sbjct:   95 AMIPMTYLPGSYICRQGTTGNSFFILTEGGCRVTIN--TSDHNERDVATLRAGDFFGEVALIEASNRRTANVISNNTVSCLTLSRSDFNRMLRNLKVKIMEHQAMR 198
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A7S3MH52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MH52_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.910e-15
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   10 LVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETG-LRSATVVAETDVTTLSLTRRHFDLYLKPIKAAILESAAAK 321
            +V + + PG YIC +G  GNSF+I+T G CRVT+N+      +R+V KL   D FGE AL +T   R A V++   V+ L+L+R  F L L  +K  +LE+ AA+
Sbjct:  208 MVLMTYLPGSYICRQGTTGNSFFILTEGHCRVTVNEEKG---ERDVGKLRAGDTFGEHALTDTSNRRQANVISVESVSCLTLSRADFRL-LTNLKGKLLEAQAAR 308
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A3N5TT75_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5TT75_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 1.150e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   16 EVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKP---IKAAILESAA 315
            E  F  G  I  EG+PG++FY+I  G  +V   D N     R +++L   DFFGE++LM+ G R+ATVVAET++T L+L+R+ F   L+    +   +L+ AA
Sbjct:   32 EQRFMEGAVIVREGEPGDAFYVIVQGEAKV--KDRNG----RTLSRLIPGDFFGEISLMDGGPRTATVVAETNLTALALSRQDFAKLLRSEPHVTVGLLKHAA 128
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A7S2CA35_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA35_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-12
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    7 ALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKPIK 291
            +L E  F  G  +C +G+PG++FYI+  G    T  D  AK QQ EV +L    +FGE+AL+ +  R ATV AE ++  LSL R+ F   + P++
Sbjct:  292 SLNEESFDDGKVVCRQGEPGDTFYIVKEGTAVCTQTD--AKGQQLEVARLSAGQYFGEIALLTSKTRQATVAAEGELAVLSLDRKTFKRVMGPME 384
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BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: E4WS69_OIKDI (cGMP-dependent protein kinase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WS69_OIKDI)

HSP 1 Score: 72.4 bits (176), Expect = 1.350e-12
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   16 EVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHF 267
            E  F  G  I  +G  G+ FYI+ SG+CRVTIN  + K+  REV++L + DFFGE AL++  +R+A V A +DV   SL R HF
Sbjct:  298 EESFVSGHQIIRQGDKGDLFYILRSGKCRVTINQGDGKE--REVSQLTRGDFFGERALVKKEVRAANVYAISDVVLYSLERDHF 379
[Close]
BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A7S3HFC7_9STRA (cGMP-dependent protein kinase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFC7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.480e-12
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   10 LVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKPIKAAI 300
            L E  +  G YI  +G+ G +FY+I SG C  TIN+PN +   + V  L  +D+FGE AL+E   R+A V+A +D   L + +  F+  L P+   I
Sbjct:  411 LSEESYSAGSYIIRQGEAGENFYLIVSGTCDCTINNPNGQGS-KVVLSLRDNDYFGERALLEAKPRAANVIATSDTKVLYIGKSSFEQVLGPLSDII 506
[Close]
BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Match: A0A538B481_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B481_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 7.110e-12
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    7 ALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVTKLHQDDFFGEVALMETGLRSATVVAETDVTTLSLT 255
            A  EV  R G  +  EG+ G  F++IT G   VTI +       R   KL   DFFGE++L++ G R+ATV AET VTTL LT
Sbjct:   63 AAKEVTHREGSVLAREGQSGIGFFLITDGTAGVTIGE-------RSAAKLGPGDFFGEISLLDGGPRTATVTAETSVTTLGLT 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig304.8237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKS0_ECTSI3.520e-5687.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9P8_9STRA4.010e-3568.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2G2W4_9STRA7.360e-2346.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A482T0W6_9ARCH3.310e-1842.45Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3MH52_9STRA4.910e-1542.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A3N5TT75_9ACTN1.150e-1340.78Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2CA35_9STRA1.170e-1240.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
E4WS69_OIKDI1.350e-1247.62cGMP-dependent protein kinase n=1 Tax=Oikopleura d... [more]
A0A7S3HFC7_9STRA3.480e-1238.14cGMP-dependent protein kinase n=1 Tax=Spumella elo... [more]
A0A538B481_9ACTN7.110e-1245.78Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig304contigH-paniculata_contig304:1299..3154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.6e-47
Seed eggNOG ortholog2880.D8LKS0
Preferred nameCNBD2
KEGG koko:K04739
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007276,GO:0007283,GO:0008150,GO:0017076,GO:0019953,GO:0022414,GO:0030551,GO:0030552,GO:0030554,GO:0032501,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048232,GO:0048609,GO:0051704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-07_004550.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size323
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig304.8237.1prot_H-paniculata_contig304.8237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig304 1300..3154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.0639231-CDS-H-paniculata_contig304:1299..13601622929933.0639231-CDS-H-paniculata_contig304:1299..1360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 1300..1360 -
1691481075.6121426-CDS-H-paniculata_contig304:1299..13601691481075.6121426-CDS-H-paniculata_contig304:1299..1360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 1300..1360 -
1622929933.0783892-CDS-H-paniculata_contig304:2107..21921622929933.0783892-CDS-H-paniculata_contig304:2107..2192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 2108..2192 -
1691481075.6262438-CDS-H-paniculata_contig304:2107..21921691481075.6262438-CDS-H-paniculata_contig304:2107..2192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 2108..2192 -
1622929933.0904405-CDS-H-paniculata_contig304:2434..25551622929933.0904405-CDS-H-paniculata_contig304:2434..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 2435..2555 -
1691481075.6363852-CDS-H-paniculata_contig304:2434..25551691481075.6363852-CDS-H-paniculata_contig304:2434..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 2435..2555 -
1622929933.1030543-CDS-H-paniculata_contig304:3100..31541622929933.1030543-CDS-H-paniculata_contig304:3100..3154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 3101..3154 -
1691481075.6455228-CDS-H-paniculata_contig304:3100..31541691481075.6455228-CDS-H-paniculata_contig304:3100..3154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 3101..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig304.8237.1

>prot_H-paniculata_contig304.8237.1 ID=prot_H-paniculata_contig304.8237.1|Name=mRNA_H-paniculata_contig304.8237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
SYALVEVHFRPGLYICEEGKPGNSFYIITSGRCRVTINDPNAKDQQREVT
KLHQDDFFGEVALMETGLRSATVVAETDVTTLSLTRRHFDLYLKPIKAAI
LESAAAK
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mRNA from alignment at H-paniculata_contig304:1299..3154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig304.8237.1 ID=mRNA_H-paniculata_contig304.8237.1|Name=mRNA_H-paniculata_contig304.8237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1856bp|location=Sequence derived from alignment at H-paniculata_contig304:1299..3154- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTACGCCCTTGTGGAGGTGCACTTTCGCCCAGGCCTTTACATCTGCGA
AGAGGTGACTAAAGTTTGGACCATCCCATGTAGACGTGTGTGCTGTAAAG
CCAGTACCCCGCCGTGTAAACTGGAACCTGTTAATTCATCTTATTTTATG
AAGATTCTATCAATATAGTGATCTCTGTTCTAGACACCAACTACCACATC
GAGCCGATTCTTGAGGATAATGTTAAACTCTATTGAAAGCACACGTCGTT
GCGGCGAGTTCAGGATCGATCGGCGTCTCTCTCCCAAAATCCATGTCAAC
GCACGAAAAGCAAAGGGTTGGGAATTATTCGATTTTTTTTATTCGGCCTG
CAAACCGGCCTGCTCTTGTTCCTTTGAATTTTTGCTGGTGTGGTGGTACA
AAACCTTCCGCAGAGGGTAATTGCGTTAGGTTCCAGGAATATATTTCTTG
AACAAGGTACAGCGTCACGTCCACCACCCCGCCAAACCAGTTTCACACAG
AGTTAATACGGAGTCCCCAACACCTTAAGAGATGTGTGTTGATTTGGAAA
CCATATATTTGACCTTGGCGACTTTGTTGTGGGTGGCGTTGTTCCACAGG
GAAAGCCGGGTAACTCGTTTTATATCATTACTTCAGGGAGGTGTAGGGTG
ACAATCAACGATCCGAACGCCAAGGACCAGCAGCGGGAGGTTACCAAGCT
CCACCAGGACGATTTCTTTGGTGAGTAAGATGGGACTTCGAGGCGTGGAT
CGATGTGGTATCTTCAGTAGATGGACCAATTGATCGGCTGATCGATACGA
CGATTCTCGCTGTCTCTGTCTCTGATTTTAAATGGACGATGTTGGATCAT
TCGTTCGTAGTTTCTCCGGGGTTATTTTTTTCCCGAGGTTCACTTTAGTA
CCTAATTTTGAGTTGTGCCTTTTTATACCGACCGCCGTCCGTCAACCCAC
GTGCGAGCGAAGGCGAGGTGGCCTTGATGGAGACTGGGCTGCGTTCGGCG
ACCGTAGTGGCGGAAACGGACGTGACAACCCTCAGCTTGACACGAAGGTA
CGGGTAGCCACTTGCAACACCTGTTGTCCTTCCTGGAAAAATGATCTTAA
CGTGAAATATGGAAAAATCGGCTCGCCATAATAAGGCGCACCTAGACAAA
CCCTTACAATTCCATACAGACCGCGTTTGCTCCGGTATTATACCGCACCT
GCTGTACACGTGGCGGCAGAAAAACCTGTTGTATCGTACCAATCGGTTAT
AATCTGTTCGTCATAGAGCAAACCAACATTTATGCAGCAAGAGTGGTGCC
AGTTTCCGTGTCATTTCTCTCTGGTCACGCCAAATCTCTTTACCAGTAGT
GTCCGTGGTGGTGGCACACTACGGTACTTCATCCGAAATATGTGTTACTT
GGCATGGCTGCCTGTGTTGTTATGTTAGAATAGTTGCTGTTAGGACATGA
GCCCAAAACGCGTTTTGCTCACACATGACGCCAACGCCGCCAGTTGATCT
CGGCCAATAGACATGATGCCCCAGGCGTGACGTGGGGGCTATACAAAAGT
ATGTACGGGTTTTACGTTGATTTGGCCCACTCCTGTACTGAGATATACCT
GTTCCCTAAGCCGCTTGCAACGTAAGCAGCACCCACCGACTTTTCACTAT
CTAGTATATCCAAAACACGTGAGCACCATCAAAACCCACATTGTCTTTCA
CCTAATTTTATCTTCCAAGGCGCCGAGACTCCCTCCCTCTCTCCCTCTCT
CCCTCGCCCTCCTCCCCCTTCTTCCCCCCTTCTGTACCCCTCAGGCACTT
CGATTTGTACCTAAAACCTATCAAGGCCGCAATTCTCGAGAGTGCCGCAG
CTAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig304:1299..3154-

>mRNA_H-paniculata_contig304.8237.1 ID=mRNA_H-paniculata_contig304.8237.1|Name=mRNA_H-paniculata_contig304.8237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig304:1299..3154- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTACGCCCTTGTGGAGGTGCACTTTCGCCCAGGCCTTTACATCTGCGA
AGAGTCCTACGCCCTTGTGGAGGTGCACTTTCGCCCAGGCCTTTACATCT
GCGAAGAGGGAAAGCCGGGTAACTCGTTTTATATCATTACTTCAGGGAGG
TGTAGGGTGACAATCAACGATCCGAACGCCAAGGACCAGCAGCGGGAGGT
TACCAAGCTCCACCAGGACGATTTCTTTGGGAAAGCCGGGTAACTCGTTT
TATATCATTACTTCAGGGAGGTGTAGGGTGACAATCAACGATCCGAACGC
CAAGGACCAGCAGCGGGAGGTTACCAAGCTCCACCAGGACGATTTCTTTG
GCGAGGTGGCCTTGATGGAGACTGGGCTGCGTTCGGCGACCGTAGTGGCG
GAAACGGACGTGACAACCCTCAGCTTGACACGAAGGCGAGGTGGCCTTGA
TGGAGACTGGGCTGCGTTCGGCGACCGTAGTGGCGGAAACGGACGTGACA
ACCCTCAGCTTGACACGAAGGCACTTCGATTTGTACCTAAAACCTATCAA
GGCCGCAATTCTCGAGAGTGCCGCAGCTAAAGCACTTCGATTTGTACCTA
AAACCTATCAAGGCCGCAATTCTCGAGAGTGCCGCAGCTAAA
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