mRNA_H-paniculata_contig304.8236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig304.8236.1
Unique NamemRNA_H-paniculata_contig304.8236.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig304.8236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig304contigH-paniculata_contig304:304..1230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size905
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig304.8236.1prot_H-paniculata_contig304.8236.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig304 304..1069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.9886975-CDS-H-paniculata_contig304:303..5991622929932.9886975-CDS-H-paniculata_contig304:303..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 304..599 -
1691481075.5756078-CDS-H-paniculata_contig304:303..5991691481075.5756078-CDS-H-paniculata_contig304:303..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 304..599 -
1622929933.0019274-CDS-H-paniculata_contig304:621..10691622929933.0019274-CDS-H-paniculata_contig304:621..1069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 622..1069 -
1691481075.585556-CDS-H-paniculata_contig304:621..10691691481075.585556-CDS-H-paniculata_contig304:621..1069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig304 622..1069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.0143979-UTR-H-paniculata_contig304:1069..12301622929933.0143979-UTR-H-paniculata_contig304:1069..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig304 1070..1230 -
1691481075.5964398-UTR-H-paniculata_contig304:1069..12301691481075.5964398-UTR-H-paniculata_contig304:1069..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig304 1070..1230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig304.8236.1

>prot_H-paniculata_contig304.8236.1 ID=prot_H-paniculata_contig304.8236.1|Name=mRNA_H-paniculata_contig304.8236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MQAISSQHLHVVVYNMKVFHAHNQGDVCSSSLLHLKERGFSSACVKMCDG
HPVLKSGNVYLHQCAGMNLKKRAQHWPLSCLTASRNTIYSSQNPLSYSFF
GSSRHPSVLQLRNRLDSTLMPSTFNLAICTHRKFSGRFPSARQRLYRGQT
GGGGTNVGGVEGFGTRVQQRAVKKRGQTKSFRVNIRTDTKYSGLTTICFP
RSTTVAVYSGDTVRSTGHCHTSVFITVRHKKSCCTIPCVNGTNPQFP*
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mRNA from alignment at H-paniculata_contig304:304..1230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig304.8236.1 ID=mRNA_H-paniculata_contig304.8236.1|Name=mRNA_H-paniculata_contig304.8236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig304:304..1230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGGGAGGGCGGGAGGGAGAGTTGTGTAGGGGGTGATGGACTACATGT
AACAAGGAGATAACTGTAACATTCAATAGTGTGCGTAACGAACAATGTAG
ATATAAGTTAACAAGAGAAAAACAGAGGTATGATAGCCCGGGACCCCAGG
ACAAATAATTGATGCAAGCGATAAGTTCCCAACACCTCCATGTAGTCGTT
TACAACATGAAGGTATTTCATGCCCATAATCAGGGCGATGTATGCTCGTC
ATCACTCTTGCACCTTAAAGAAAGAGGGTTTTCGTCTGCCTGCGTCAAAA
TGTGCGACGGCCACCCAGTGCTGAAAAGTGGCAATGTTTATCTCCATCAA
TGTGCAGGCATGAATCTAAAGAAACGAGCTCAGCATTGGCCTCTCAGCTG
TCTAACAGCATCCCGGAATACTATATATTCATCGCAAAACCCTCTATCAT
ATTCTTTTTTTGGTTCGTCCAGACACCCGAGTGTGCTGCAACTCCGCAAC
CGACTCGACTCGACTCTGATGCCGTCCACTTTTAACCTTGCCATATGTAC
ACACAGGAAATTCAGCGGCCGTTTCCCCTCCGCGCGACAACGTTTGTACA
GGGGGCAGAGCAGCCGAGGTAGTGGGAGCAGCAGGCGGTGGAGGAACGAA
TGTTGGGGGCGTTGAAGGATTCGGCACACGAGTCCAGCAGAGGGCCGTCA
AGAAAAGGGGTCAGACCAAGTCGTTTCGGGTAAATATCCGCACTGATACG
AAATATTCAGGGCTAACCACGATTTGTTTTCCTAGGTCAACCACAGTAGC
GGTGTACTCCGGTGATACGGTGCGTAGTACTGGCCATTGTCACACCTCAG
TTTTCATCACGGTTCGACACAAAAAGTCGTGTTGCACGATACCGTGCGTG
AACGGTACCAATCCCCAATTTCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig304:304..1230-

>mRNA_H-paniculata_contig304.8236.1 ID=mRNA_H-paniculata_contig304.8236.1|Name=mRNA_H-paniculata_contig304.8236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig304:304..1230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCGATAAGTTCCCAACACCTCCATGTAGTCGTTTACAACATGAA
GGTATTTCATGCCCATAATCAGGGCGATGTATGCTCGTCATCACTCTTGC
ACCTTAAAGAAAGAGGGTTTTCGTCTGCCTGCGTCAAAATGTGCGACGGC
CACCCAGTGCTGAAAAGTGGCAATGTTTATCTCCATCAATGTGCAGGCAT
GAATCTAAAGAAACGAGCTCAGCATTGGCCTCTCAGCTGTCTAACAGCAT
CCCGGAATACTATATATTCATCGCAAAACCCTCTATCATATTCTTTTTTT
GGTTCGTCCAGACACCCGAGTGTGCTGCAACTCCGCAACCGACTCGACTC
GACTCTGATGCCGTCCACTTTTAACCTTGCCATATGTACACACAGGAAAT
TCAGCGGCCGTTTCCCCTCCGCGCGACAACGTTTGTACAGGGGGCAGAAT
GCAAGCGATAAGTTCCCAACACCTCCATGTAGTCGTTTACAACATGAAGG
TATTTCATGCCCATAATCAGGGCGATGTATGCTCGTCATCACTCTTGCAC
CTTAAAGAAAGAGGGTTTTCGTCTGCCTGCGTCAAAATGTGCGACGGCCA
CCCAGTGCTGAAAAGTGGCAATGTTTATCTCCATCAATGTGCAGGCATGA
ATCTAAAGAAACGAGCTCAGCATTGGCCTCTCAGCTGTCTAACAGCATCC
CGGAATACTATATATTCATCGCAAAACCCTCTATCATATTCTTTTTTTGG
TTCGTCCAGACACCCGAGTGTGCTGCAACTCCGCAACCGACTCGACTCGA
CTCTGATGCCGTCCACTTTTAACCTTGCCATATGTACACACAGGAAATTC
AGCGGCCGTTTCCCCTCCGCGCGACAACGTTTGTACAGGGGGCAGACAGG
CGGTGGAGGAACGAATGTTGGGGGCGTTGAAGGATTCGGCACACGAGTCC
AGCAGAGGGCCGTCAAGAAAAGGGGTCAGACCAAGTCGTTTCGGGTAAAT
ATCCGCACTGATACGAAATATTCAGGGCTAACCACGATTTGTTTTCCTAG
GTCAACCACAGTAGCGGTGTACTCCGGTGATACGGTGCGTAGTACTGGCC
ATTGTCACACCTCAGTTTTCATCACGGTTCGACACAAAAAGTCGTGTTGC
ACGATACCGTGCGTGAACGGTACCAATCCCCAATTTCCGTGACAGGCGGT
GGAGGAACGAATGTTGGGGGCGTTGAAGGATTCGGCACACGAGTCCAGCA
GAGGGCCGTCAAGAAAAGGGGTCAGACCAAGTCGTTTCGGGTAAATATCC
GCACTGATACGAAATATTCAGGGCTAACCACGATTTGTTTTCCTAGGTCA
ACCACAGTAGCGGTGTACTCCGGTGATACGGTGCGTAGTACTGGCCATTG
TCACACCTCAGTTTTCATCACGGTTCGACACAAAAAGTCGTGTTGCACGA
TACCGTGCGTGAACGGTACCAATCCCCAATTTCCGTGA
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