mRNA_H-paniculata_contig3036.8229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3036.8229.1
Unique NamemRNA_H-paniculata_contig3036.8229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3036.8229.1 vs. uniprot
Match: A0A6H5KJN5_9PHAE (DUF2451 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.250e-21
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:   25 EELEAEENRYGSGWVVTQAALNGVARYAGHALQIMALVRPAAPSAFEGLTQLV 183
            EELEAEE RYGSGWVVTQA+LNGVARYAGHALQIMALVRPAAPSAF GL QLV
Sbjct:   86 EELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFGGLRQLV 138
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BLAST of mRNA_H-paniculata_contig3036.8229.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.910e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   40 EENRYGSGWVVTQAALNGVARYAGHALQIMALVRPAAPSAFEGL 171
            E +RYGS WVVTQAALNG+ARY GH LQ+M L+RP A  AF GL
Sbjct: 1281 EVDRYGSKWVVTQAALNGIARYTGHYLQMMTLLRPVAGDAFRGL 1324
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3036.8229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJN5_9PHAE2.250e-2192.45DUF2451 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CNI9_9STRA2.910e-1070.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3036contigH-paniculata_contig3036:15790..17414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.3330038-CDS-H-paniculata_contig3036:15789..158391622929932.3330038-CDS-H-paniculata_contig3036:15789..15839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 15790..15839 +
1691481075.2743037-CDS-H-paniculata_contig3036:15789..158391691481075.2743037-CDS-H-paniculata_contig3036:15789..15839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 15790..15839 +
1622929932.349117-CDS-H-paniculata_contig3036:17281..174141622929932.349117-CDS-H-paniculata_contig3036:17281..17414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 17282..17414 +
1691481075.2826192-CDS-H-paniculata_contig3036:17281..174141691481075.2826192-CDS-H-paniculata_contig3036:17281..17414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 17282..17414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3036.8229.1prot_H-paniculata_contig3036.8229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3036 15790..17414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3036.8229.1

>prot_H-paniculata_contig3036.8229.1 ID=prot_H-paniculata_contig3036.8229.1|Name=mRNA_H-paniculata_contig3036.8229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
VGWGVGLEEELEAEENRYGSGWVVTQAALNGVARYAGHALQIMALVRPAA
PSAFEGLTQLV
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mRNA from alignment at H-paniculata_contig3036:15790..17414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3036.8229.1 ID=mRNA_H-paniculata_contig3036.8229.1|Name=mRNA_H-paniculata_contig3036.8229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1625bp|location=Sequence derived from alignment at H-paniculata_contig3036:15790..17414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCTGGGGGGTGGGTTTGGAGGAGGAACTCGAGGCGGAAGAGAATCG
GTGAGTATGGAAGCATCGGATAAAGGTTTTTGCCTTCGCCTTCCGGGGGT
TAAAAAACCCCCCAATAAAACGAACGACACAATTTTGGCGCCGAGAAGCG
CAAGGAGACTCGTGCCGCAAGACCTCAGCCCTTATTGTAGATTGATTGCC
TATTTGCTATGTTTTCCAACCCTCCTTTTTTATGGTGCGTGGGTCTCTGG
TGCTCTGACTTCCTACGTTTCTTGTTTGTGCGGTACTTGTCGGCGCAAGC
CAATCATAACTAATGCCATCTTCACACCTTGTTACTGTACACTGGTAAGG
ACGACAGTAGCAGGGACATTAAGAAATTCACCACTGACATGCAAGGAGAA
ATGAAACACTACGTCTCTCAATTCCTCAGCTCTTAGACCTCTATCGGCGG
CATTGGATGTGCCTTCAATGGGTGTGATGCTCACTAAACGCATGTTGACT
GTGAGTTGCTCGCTGATCACTTGCGAACTATGGCAAATCGACTCCGTGAC
GGTTCATGCCGCATTTAATGAACACACCCAATCAGCGCAACACCCGCCAC
CACGTCATCCGATGTTCGATACTGAAAGTTTTGTGCATCTTCCCAAGGTT
TTCAAGCGACTTCGTTACTGAGATTTTCGTTACTGAAGTGCAAAAACACA
ATTTTTCTTTCCGAAATCGTCTAATGTATCGTATTCTCGAGCAACTATGC
GCATGAGAATTGTACACATGAACGTGGGTGAGTATGCACGTTCGGAACAT
TGATGCGCATACCAATCGTTGTATGACTGTTTGTTTTCCGGATAGTATGG
CGTGTATATCCTATCGGTATTTCACAAAATGTTCAATTGATGGAGGGTAG
TGTGCATGTTCAGAACACTAGTGCATATACAGTCGCCGTACGGTTGGTTG
TTTTCCGAATAGTTCAGTGTATATATATCCCATCGATACTTCCCTGAGTG
ATGTAATGGTCGAGTGCACACCGAATACAGTATTCACGATTAGTTTCTCG
CATTTATTCGTGTTTTTTGTTGATATTTGTTCGGGGGATGAAGGGTTTCG
CCCCCCGGACAAATACGAATAATTGGCGTGACCGCCACGAGATAAAAAAA
GAATAATTCGCCTGAGTTTCACAACGAGCTCGTGTATTCTATGCTAATAA
TACTCGTAAATTGAATGGACAGGAGTGGGTACTTTATTCTATGGGTCCGC
TCATTCTGAAACTCAGGCGACTACTTTTTAATTTTCGTATTTGTCTGGGG
GATGAAGGGTTTCAAGTAGTCGGCAATTGGCCATATGACCGTCCATGAAT
CAGGGAAAAATCTCACATGACCATCCGACCGCGAACCGGTTCGTAACAAT
GTTATGTGAAGAAGACATGTGTACTGAATACCGGACCGTTAATGAAAGGA
GTTACGAAAATCTTCTCCCCTTGCCTCCACCACACACCGCAGGTATGGGT
CTGGATGGGTTGTGACGCAGGCAGCGCTAAACGGTGTGGCTCGCTACGCA
GGGCACGCGCTGCAGATAATGGCGCTGGTGCGGCCTGCCGCACCGTCGGC
CTTCGAGGGCTTGACGCAGCTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3036:15790..17414+

>mRNA_H-paniculata_contig3036.8229.1 ID=mRNA_H-paniculata_contig3036.8229.1|Name=mRNA_H-paniculata_contig3036.8229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig3036:15790..17414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCTGGGGGGTGGGTTTGGAGGAGGAACTCGAGGCGGAAGAGAATCG
GTCGGCTGGGGGGTGGGTTTGGAGGAGGAACTCGAGGCGGAAGAGAATCG
GTATGGGTCTGGATGGGTTGTGACGCAGGCAGCGCTAAACGGTGTGGCTC
GCTACGCAGGGCACGCGCTGCAGATAATGGCGCTGGTGCGGCCTGCCGCA
CCGTCGGCCTTCGAGGGCTTGACGCAGCTGGTGGTATGGGTCTGGATGGG
TTGTGACGCAGGCAGCGCTAAACGGTGTGGCTCGCTACGCAGGGCACGCG
CTGCAGATAATGGCGCTGGTGCGGCCTGCCGCACCGTCGGCCTTCGAGGG
CTTGACGCAGCTGGTG
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