mRNA_H-paniculata_contig3036.8227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3036.8227.1
Unique NamemRNA_H-paniculata_contig3036.8227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3036.8227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3036contigH-paniculata_contig3036:4915..5862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.196207-CDS-H-paniculata_contig3036:4914..50341622929932.196207-CDS-H-paniculata_contig3036:4914..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 4915..5034 +
1691481075.1976075-CDS-H-paniculata_contig3036:4914..50341691481075.1976075-CDS-H-paniculata_contig3036:4914..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 4915..5034 +
1622929932.208189-CDS-H-paniculata_contig3036:5621..58611622929932.208189-CDS-H-paniculata_contig3036:5621..5861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 5622..5861 +
1691481075.2065752-CDS-H-paniculata_contig3036:5621..58611691481075.2065752-CDS-H-paniculata_contig3036:5621..5861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3036 5622..5861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3036.8227.1prot_H-paniculata_contig3036.8227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3036 4915..5861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3036.8227.1

>prot_H-paniculata_contig3036.8227.1 ID=prot_H-paniculata_contig3036.8227.1|Name=mRNA_H-paniculata_contig3036.8227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
GDGKAAAGAGRGDRDPRVDVLQKLLVRQRRSLWGEIEKKLISLLSDASVS
GGALELEDLAGVMGAVGLLATLGDEFVAGCSGCRCDDVHDANAGAASASA
STTATTTATTQVGARTNMEG
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mRNA from alignment at H-paniculata_contig3036:4915..5862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3036.8227.1 ID=mRNA_H-paniculata_contig3036.8227.1|Name=mRNA_H-paniculata_contig3036.8227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=948bp|location=Sequence derived from alignment at H-paniculata_contig3036:4915..5862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGATGGAAAGGCAGCGGCGGGGGCGGGTAGGGGGGACAGGGATCCCCG
TGTGGATGTTCTGCAAAAGCTGCTCGTGCGGCAGCGGCGATCGCTGTGGG
GGGAGATTGAAAAGAAACTGGTGAGAGGCGCGGGGAGTGAAGGCGTGTGG
TTTGTTTCTGTTGTCATGTTCCTGGATAGTCCTCAGATGTGTCTACTGTT
CAGTCTGTTGGTAAGTTAGTTAGTTTTACGCTTGCAGGAGACCAGAGAAA
AACCTGTTGTGATACTACTGCCGGACGGTCAGGTACGTCTCAGCTTTCGA
ACACGGGTTCTCTTATGACGGTTACCAGGATTGTTTACCCCACCGATGTA
TTTTGGACCTCCGCACGGGATTACTCGCAGCTTAGGATCTACTTTAGCTC
GTAAGTGTTCACAACCAAAGTTTGAGGTCAGCTATATACCCTCAACATGA
GTATGATGATGGAGCTATTATATGAGCGTTAGAGCTGTGTTCTACTGTGG
CAGGTCGGTTGGTTGATTCGTTAATGAGGCTTACCGTGGATGAATAAGGT
GTTTGATGCTTGTTGGTACGTTCTGTGTCTGTGCTTGTGCATGTTTCAAA
ACATGCTCCAATGTTGTGAATTGTGTCCTGTTGATGAGGGTGACTCCGCC
ACCCCCTCCCCCCCTTTCCTTCATCGGTCTTCTAAACAAACCCAACACTA
CTGCAAGATATCTCTGCTGTCGGACGCCTCAGTGAGCGGCGGAGCCCTAG
AGCTGGAAGACCTCGCGGGCGTAATGGGGGCCGTTGGCCTCTTGGCAACG
CTTGGAGATGAATTTGTCGCGGGCTGCTCAGGTTGCCGTTGTGATGATGT
CCATGATGCCAATGCTGGTGCTGCTTCTGCTTCTGCTTCTACTACTGCTA
CTACTACTGCTACTACGCAAGTTGGGGCGCGAACTAATATGGAGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3036:4915..5862+

>mRNA_H-paniculata_contig3036.8227.1 ID=mRNA_H-paniculata_contig3036.8227.1|Name=mRNA_H-paniculata_contig3036.8227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig3036:4915..5862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGATGGAAAGGCAGCGGCGGGGGCGGGTAGGGGGGACAGGGATCCCCG
TGTGGATGTTCTGCAAAAGCTGCTCGTGCGGCAGCGGCGATCGCTGTGGG
GGGAGATTGAAAAGAAACTGGGTGATGGAAAGGCAGCGGCGGGGGCGGGT
AGGGGGGACAGGGATCCCCGTGTGGATGTTCTGCAAAAGCTGCTCGTGCG
GCAGCGGCGATCGCTGTGGGGGGAGATTGAAAAGAAACTGATATCTCTGC
TGTCGGACGCCTCAGTGAGCGGCGGAGCCCTAGAGCTGGAAGACCTCGCG
GGCGTAATGGGGGCCGTTGGCCTCTTGGCAACGCTTGGAGATGAATTTGT
CGCGGGCTGCTCAGGTTGCCGTTGTGATGATGTCCATGATGCCAATGCTG
GTGCTGCTTCTGCTTCTGCTTCTACTACTGCTACTACTACTGCTACTACG
CAAGTTGGGGCGCGAACTAATATGGAGGGAATATCTCTGCTGTCGGACGC
CTCAGTGAGCGGCGGAGCCCTAGAGCTGGAAGACCTCGCGGGCGTAATGG
GGGCCGTTGGCCTCTTGGCAACGCTTGGAGATGAATTTGTCGCGGGCTGC
TCAGGTTGCCGTTGTGATGATGTCCATGATGCCAATGCTGGTGCTGCTTC
TGCTTCTGCTTCTACTACTGCTACTACTACTGCTACTACGCAAGTTGGGG
CGCGAACTAATATGGAGGGA
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