mRNA_H-paniculata_contig30343.8225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 120 bits (302), Expect = 6.740e-29 Identity = 69/178 (38.76%), Postives = 92/178 (51.69%), Query Frame = 1
Query: 4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQE-----------------------------------FSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
PLE+VHTD AGP D S GG R+ + F+DD+SR +Y L++KS AL L +F+ + E +A YTPQQ VA R R+I +MA + + + R +WAEAVR AVY LNR P + TP E W G+ P + HL++FGC AY
Sbjct: 388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 565
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 119 bits (298), Expect = 2.320e-28 Identity = 68/178 (38.20%), Postives = 91/178 (51.12%), Query Frame = 1
Query: 4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQE-----------------------------------FSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
PLE+VHTD AGP D S GG R+ + F+DD+SR +Y L++KS AL L +F+ + E + YTPQQ VA R R+I +MA + + + R +WAEAVR AVY LNR P + TP E W G+ P + HL++FGC AY
Sbjct: 1310 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 1487
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 115 bits (287), Expect = 6.890e-27 Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 1
Query: 1 EPLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKS----------------------------GALWTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAY 426
+PLE+VH+D AGP D S GG R+ + F+DD+SR VY L++KS G +T FE + + + YTPQQ VA R R+I ++A + + ++ R +WAEAVR AVY LNR P + TP E W G+ P + HL++FGC AY
Sbjct: 841 KPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAY 1018
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A4C1SRD4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SRD4_EUMVA) HSP 1 Score: 107 bits (266), Expect = 3.930e-24 Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 4 PLELVHTDRAGPVDKS-FGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQS 441
PLEL+H+D GP++ S FGG ++ I ++DD++RM + YTPQQ +A R R++ E A + N+ ++YWAEA+ A Y +NR+P + G TPYE W G P L H+++FG A V S
Sbjct: 186 PLELIHSDLCGPMENSSFGGMKYFITYIDDFTRMTSI------------------------PYTPQQNGMAERMNRTLVERARCMLFYANLEKKYWAEALATAAYVVNRSPTKSLQGKTPYEMWKGMKPNLSHMKIFGSEAMVHVPS 308
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1FB66_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FB66_TRIPS) HSP 1 Score: 105 bits (262), Expect = 1.500e-23 Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 1
Query: 4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALW----TLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
P E++H D G + S GG R+ I F D+ S RKVY ++ K L LT+ ++ V E + Y PQ +A R R++ E A A + N+ R WAEAV A Y LNR P R TPYE+W G P ++HLR+FGC AYV
Sbjct: 199 PGEIIHADVCGSFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGQKKIVHEKTPPYAPQCNGMAERENRTLVEKARAMLHKRNLPRCLWAEAVHTAAYLLNRIPHRKEITKTPYEEWFGRRPTVEHLRIFGCDAYV 352
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1KP93_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1KP93_9BILA) HSP 1 Score: 103 bits (258), Expect = 5.420e-23 Identity = 63/154 (40.91%), Postives = 83/154 (53.90%), Query Frame = 1
Query: 4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGAL----WTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
P E++H D GP + S GG R+ I F D+ S RKVY ++ K L LT+ ++ V E + YTPQ +A R R++ E A A + T N+ R AEAV A Y LNR P R TPYE+W G ++HLR+FGC AYV
Sbjct: 472 PGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTALTEIKQETGQKKIVHEKTPPYTPQCNGMAERENRTLAEKARAMLHTRNLPRCLCAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRLTVEHLRIFGCDAYV 625
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A8J5H6Z3_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H6Z3_ZINOF) HSP 1 Score: 103 bits (257), Expect = 7.220e-23 Identity = 59/155 (38.06%), Postives = 80/155 (51.61%), Query Frame = 1
Query: 1 EPLELVHTDRAGPVDKSFGGC-----RFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERV-------QEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
+PLEL+H D GP+ S +F ++ + K+ TLR G + T+F R + +A YTPQQ V R R++ MA + + +M R+W EA+R AVY LNR P + TP+E W G P L HLRVFGC AYV
Sbjct: 9 KPLELLHADICGPISPSKNDAFQAFKKFKVL--TENKTGYKIRTLRTDRGGEFLSTEFTRFCGNEGIERHLTAPYTPQQNGVVERRNRTVIAMARSLLKGTHMPARFWGEAIRHAVYLLNRLPTKALGERTPFEAWMGRKPHLSHLRVFGCVAYV 161
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1JKA5_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1JKA5_TRIPS) HSP 1 Score: 103 bits (257), Expect = 7.320e-23 Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1
Query: 4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALW----TLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
P E++H D G + S GG R+ I F ++ S KVY ++ K L LT+ ++ V E ++ Y PQ +A R R++ E A A + N+ R WAEAV A Y LNR P R TPYE+W G P ++HLR+FGC AYV
Sbjct: 477 PGEIIHADVCGSFIHPSVGGNRYFICFKNESSEYCKVYLMKTKDEVLRCLKIALTEIKQETGQKKIVHEKTSPYAPQCNGMAERENRTLVEKARAMLHKRNLPRCLWAEAVHTAAYLLNRIPQRKEITKTPYEEWFGRRPTVEHLRIFGCVAYV 630
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY) HSP 1 Score: 102 bits (254), Expect = 1.910e-22 Identity = 60/150 (40.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query: 4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
P +L+HTD AGP D S GG R + K+ LR G +T FE + + +A YTPQQ VA R R+I +MA + + + R +WAEAVR AVY LNR P + TP E W G+ P + HL++FGC AY
Sbjct: 372 PNQLLHTDIAGPFDIPSLGGNRIQSNVGKQSGQYLKI--LRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 519
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3AQW2_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AQW2_HIBSY) HSP 1 Score: 100 bits (250), Expect = 6.680e-22 Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = 1
Query: 7 LELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGA-----LWTLTQFERVQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
L+ VH+D GP S GG R+ + F+DD+SR VY L+QKS LW + + F+ TPQ V R RS+ E A + + + +WAEAV +A Y +NR+P G E W G D+LR+FGC AYV
Sbjct: 1242 LDYVHSDVWGPSTTPSLGGSRYYVTFIDDFSRKVWVYFLKQKSEVFEKFKLWKAEERGIQRHFTVRKTPQHNGVVERMNRSLNERARCLRLNAGLPKHFWAEAVNMACYLINRSPRASLAGKVAEEVWTGHDISFDNLRIFGCPAYV 1388 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30343.8225.1 >prot_H-paniculata_contig30343.8225.1 ID=prot_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp EPLELVHTDRAGPVDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLback to top mRNA from alignment at H-paniculata_contig30343:19..567- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30343.8225.1 ID=mRNA_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at H-paniculata_contig30343:19..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30343:19..567- >mRNA_H-paniculata_contig30343.8225.1 ID=mRNA_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig30343:19..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |