mRNA_H-paniculata_contig30289.8214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30289.8214.1
Unique NamemRNA_H-paniculata_contig30289.8214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30289.8214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30289contigH-paniculata_contig30289:668..2166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30289.8214.1prot_H-paniculata_contig30289.8214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30289 694..2151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.3928013-UTR-H-paniculata_contig30289:667..6931622929930.3928013-UTR-H-paniculata_contig30289:667..693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30289 668..693 -
1691481074.2279074-UTR-H-paniculata_contig30289:667..6931691481074.2279074-UTR-H-paniculata_contig30289:667..693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30289 668..693 -
1622929930.4408026-UTR-H-paniculata_contig30289:2151..21661622929930.4408026-UTR-H-paniculata_contig30289:2151..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30289 2152..2166 -
1691481074.2676837-UTR-H-paniculata_contig30289:2151..21661691481074.2676837-UTR-H-paniculata_contig30289:2151..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30289 2152..2166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.405448-CDS-H-paniculata_contig30289:693..8691622929930.405448-CDS-H-paniculata_contig30289:693..869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30289 694..869 -
1691481074.2404177-CDS-H-paniculata_contig30289:693..8691691481074.2404177-CDS-H-paniculata_contig30289:693..869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30289 694..869 -
1622929930.4197445-CDS-H-paniculata_contig30289:2135..21511622929930.4197445-CDS-H-paniculata_contig30289:2135..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30289 2136..2151 -
1691481074.2506151-CDS-H-paniculata_contig30289:2135..21511691481074.2506151-CDS-H-paniculata_contig30289:2135..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30289 2136..2151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30289.8214.1

>prot_H-paniculata_contig30289.8214.1 ID=prot_H-paniculata_contig30289.8214.1|Name=mRNA_H-paniculata_contig30289.8214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MLGLRGSCVSRESSLKKSDRACSPKGGGGWCGVRCYLWHPLLNDGVTFQS
IFFVPSRFVLSAA*
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mRNA from alignment at H-paniculata_contig30289:668..2166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30289.8214.1 ID=mRNA_H-paniculata_contig30289.8214.1|Name=mRNA_H-paniculata_contig30289.8214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1499bp|location=Sequence derived from alignment at H-paniculata_contig30289:668..2166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATATCGCCTTGGATGTTGGGCTTGAGAGGTACGTTTATTATTATTAT
TTTTTTAATTGATGGATCAGCCGGATTCCTCCTCCAGTACGGTGAGGGCG
GGGTCCTTCGAAAATGCGAGAGACCCACAGAAAAGGGGTGGTCCTTACTG
ACACCTAATAATGATAAGAATTCAGTACCGAGATTTATCACATGACAAAT
CATGCAGGACCCCTGATGAAGTCTGAAATCTTGCCCGAATTACGCCGCGC
TCCGCGGCGGCGGCGGCGTGTTTTGGTAACTTTTTCCATATATTTTTTTG
TTTTCCCGCGTACGGATTTATTTACAACATACGGATTTATCCACTTTTAA
AATGGTTGGAACATGAGCCGCGTGTGTAAACAGGTGCGCAAATTTAAGCC
TCCAAAGCTGATGAGTAAATTTTAGATACCTGGACTGATCTCGGTATTTA
TGAGGCAGGTTCCCAAATCAGAATTAGCTTCCTACATACTACAGTTATGG
TACTACTTGGATTGAGCGGGGGCGGGATCAGTCATTTTTGGAGCATGACA
CTCTTGAGAGAGGGAGGTTCCGGATGCTCTTGAGCACGTAGTAACTCGGT
TTGTGCTTTGTGCTTTTTGCTTCTTGTTTTTGATAGTTTTTCGGACCCAC
CATCTGTCCGCGTGTTTTTATTAACGATCTTAGTGATTTCACACCGTCCA
AAGACAGGACGTACGTAAATCATTTTCACAACAACAAAAAAGGGGGGGGA
GAGGCGCCCACTAAGTATCGTCGTAATGTCATGGGATTAAATAGATAATG
ATCGGTGGATGTAGCATCTGCCGGTGACGATTTTTCCACACCTGGATTTT
ATCGCCACTACTACTGTTACTTTTTACGGATTTCTTCACCGATTACGGAT
TACGGAGTACGGATTGCGGAGTACGGATTATGGAGTACGGATTACGGATT
ACGGATTACGGAATACGGAGGAACATAATAGTCCGGAGCATTTTTTTTGT
TTTGTCGGAAACTGAATTTTGTTTTTCCCCGTTGGTCAACAGATTTTCGC
TTCTGGCTGAAAACAAAAGCACACTCTAAAAACACTCGCACAGGCATGCA
GCAACCGATTGGTGCATATCGTATTGCATGAGTTACACCTCAAAGTGTCA
ATTTTCTAATTTGCTCCTGATTAATATGTTCCTCCGTAATAGTACTAGTT
GTGGTAGTGGTAGTAGGGTGGCCCCCGAAGGCTGTATCGTTAGAACTGTC
TCGTCTTTATCTACCTGTTGATGGACAATCTTGTTCGATGGTTGCAGGGT
CTTGCGTCTCGAGGGAATCAAGCTTGAAGAAAAGTGACAGGGCATGCTCA
CCGAAGGGAGGGGGAGGGTGGTGTGGTGTCCGCTGTTACTTATGGCACCC
TCTCCTGAATGATGGCGTGACGTTTCAGTCCATTTTTTTTGTTCCTTCGC
GTTTTGTTTTGTCTGCAGCTTGAGCTTCGGGACACAGCGAGAGACAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig30289:668..2166-

>mRNA_H-paniculata_contig30289.8214.1 ID=mRNA_H-paniculata_contig30289.8214.1|Name=mRNA_H-paniculata_contig30289.8214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig30289:668..2166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGGCTTGAGAGATGTTGGGCTTGAGAGGGTCTTGCGTCTCGAGGG
AATCAAGCTTGAAGAAAAGTGACAGGGCATGCTCACCGAAGGGAGGGGGA
GGGTGGTGTGGTGTCCGCTGTTACTTATGGCACCCTCTCCTGAATGATGG
CGTGACGTTTCAGTCCATTTTTTTTGTTCCTTCGCGTTTTGTTTTGTCTG
CAGCTTGAGGTCTTGCGTCTCGAGGGAATCAAGCTTGAAGAAAAGTGACA
GGGCATGCTCACCGAAGGGAGGGGGAGGGTGGTGTGGTGTCCGCTGTTAC
TTATGGCACCCTCTCCTGAATGATGGCGTGACGTTTCAGTCCATTTTTTT
TGTTCCTTCGCGTTTTGTTTTGTCTGCAGCTTGA
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