mRNA_H-paniculata_contig3026.8208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3026.8208.1
Unique NamemRNA_H-paniculata_contig3026.8208.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3026.8208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3026contigH-paniculata_contig3026:12900..13511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.9097676-CDS-H-paniculata_contig3026:12899..132981622929929.9097676-CDS-H-paniculata_contig3026:12899..13298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3026 12900..13298 +
1691481074.0034704-CDS-H-paniculata_contig3026:12899..132981691481074.0034704-CDS-H-paniculata_contig3026:12899..13298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3026 12900..13298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.929601-UTR-H-paniculata_contig3026:13298..135111622929929.929601-UTR-H-paniculata_contig3026:13298..13511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3026 13299..13511 +
1691481074.0148273-UTR-H-paniculata_contig3026:13298..135111691481074.0148273-UTR-H-paniculata_contig3026:13298..13511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3026 13299..13511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3026.8208.1prot_H-paniculata_contig3026.8208.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3026 12900..13298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3026.8208.1

>prot_H-paniculata_contig3026.8208.1 ID=prot_H-paniculata_contig3026.8208.1|Name=mRNA_H-paniculata_contig3026.8208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
HRVKPVANVYDSNYASDSLVCFGHEVVVKIWGCAVACRGKSRFNRASVAR
RTTNTISSVRCVVYAVLSSNDASGSCVAFQSSFRGKKNCPRCRVFCRLRE
FSHVSCTPVLGFGSSYLLLSVLFPPHLVRGLE*
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mRNA from alignment at H-paniculata_contig3026:12900..13511+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3026.8208.1 ID=mRNA_H-paniculata_contig3026.8208.1|Name=mRNA_H-paniculata_contig3026.8208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig3026:12900..13511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAGGGTAAAGCCTGTGGCAAATGTATACGATAGCAACTACGCCTCTGA
TTCGTTGGTGTGTTTCGGACATGAGGTGGTTGTGAAAATTTGGGGCTGTG
CTGTGGCTTGCAGAGGAAAATCAAGATTTAATCGTGCGAGTGTCGCAAGG
CGTACTACTAATACCATTTCGAGCGTCCGGTGCGTCGTCTATGCAGTGTT
GTCGTCAAACGACGCGTCGGGGTCGTGTGTGGCATTTCAGTCCTCGTTTC
GGGGAAAAAAAAATTGCCCCCGTTGTCGGGTGTTTTGTAGGCTCCGCGAG
TTTTCGCATGTCTCTTGTACTCCGGTGTTGGGATTTGGATCCAGCTATCT
CTTGCTTTCTGTTCTGTTCCCCCCCCATCTTGTTAGGGGACTGGAGTAGC
AGCTCTCCATTATTTTCCAGAGGTGTGTTTTTTCGCCGTTTCTGCATGGA
ACGTGCGGGTAGATGCTTTGATGATGTGAATGAGGTATAGATGGGTACCA
CAGCCATGTTGTGGCGTGAAACCACCGGGTTGTGTTGCGGCATGAAGCCG
TCGGATTAACGGCTTCAAGCTGCCGAATTGTTGTATGACACCACGGAACC
TGACGGTTTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3026:12900..13511+

>mRNA_H-paniculata_contig3026.8208.1 ID=mRNA_H-paniculata_contig3026.8208.1|Name=mRNA_H-paniculata_contig3026.8208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig3026:12900..13511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAGGGTAAAGCCTGTGGCAAATGTATACGATAGCAACTACGCCTCTGA
TTCGTTGGTGTGTTTCGGACATGAGGTGGTTGTGAAAATTTGGGGCTGTG
CTGTGGCTTGCAGAGGAAAATCAAGATTTAATCGTGCGAGTGTCGCAAGG
CGTACTACTAATACCATTTCGAGCGTCCGGTGCGTCGTCTATGCAGTGTT
GTCGTCAAACGACGCGTCGGGGTCGTGTGTGGCATTTCAGTCCTCGTTTC
GGGGAAAAAAAAATTGCCCCCGTTGTCGGGTGTTTTGTAGGCTCCGCGAG
TTTTCGCATGTCTCTTGTACTCCGGTGTTGGGATTTGGATCCAGCTATCT
CTTGCTTTCTGTTCTGTTCCCCCCCCATCTTGTTAGGGGACTGGAGTAGC
ACAGGGTAAAGCCTGTGGCAAATGTATACGATAGCAACTACGCCTCTGAT
TCGTTGGTGTGTTTCGGACATGAGGTGGTTGTGAAAATTTGGGGCTGTGC
TGTGGCTTGCAGAGGAAAATCAAGATTTAATCGTGCGAGTGTCGCAAGGC
GTACTACTAATACCATTTCGAGCGTCCGGTGCGTCGTCTATGCAGTGTTG
TCGTCAAACGACGCGTCGGGGTCGTGTGTGGCATTTCAGTCCTCGTTTCG
GGGAAAAAAAAATTGCCCCCGTTGTCGGGTGTTTTGTAGGCTCCGCGAGT
TTTCGCATGTCTCTTGTACTCCGGTGTTGGGATTTGGATCCAGCTATCTC
TTGCTTTCTGTTCTGTTCCCCCCCCATCTTGTTAGGGGACTGGAGTAG
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