mRNA_H-paniculata_contig30259.8207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30259.8207.1
Unique NamemRNA_H-paniculata_contig30259.8207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig30259.8207.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.060e-22
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QEHFVVYNRMHPTEQYRVSLKLTSGALRTFFLSPGSKSAHPFRTLEEKITTFLQVF 168
            +EHF+VYNR HPTEQYR+SLKLTSGALR FFLSPGSK+A+PF TLE+KITTFLQ +
Sbjct: 3220 EEHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAY 3275
[Close]
BLAST of mRNA_H-paniculata_contig30259.8207.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.810e-22
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 EHFVVYNRMHPTEQYRVSLKLTSGALRTFFLSPGSKSAHPFRTLEEKITTFLQVF 168
            EHF+VYNR HPTEQYR+SLKLTSGALR FFLSPGSK+A+PF TLE+KITTFLQ +
Sbjct: 4398 EHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAY 4452
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30259.8207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE2.060e-2280.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI2.810e-2281.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30259contigH-paniculata_contig30259:1826..1993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue4.7e-14
Seed eggNOG ortholog2880.D8LHH6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.8155196-CDS-H-paniculata_contig30259:1825..19661622929929.8155196-CDS-H-paniculata_contig30259:1825..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30259 1826..1966 -
1691481073.9722006-CDS-H-paniculata_contig30259:1825..19661691481073.9722006-CDS-H-paniculata_contig30259:1825..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30259 1826..1966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.866604-UTR-H-paniculata_contig30259:1966..19931622929929.866604-UTR-H-paniculata_contig30259:1966..1993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30259 1967..1993 -
1691481073.99374-UTR-H-paniculata_contig30259:1966..19931691481073.99374-UTR-H-paniculata_contig30259:1966..1993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30259 1967..1993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30259.8207.1prot_H-paniculata_contig30259.8207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30259 1826..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30259.8207.1

>prot_H-paniculata_contig30259.8207.1 ID=prot_H-paniculata_contig30259.8207.1|Name=mRNA_H-paniculata_contig30259.8207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MHPTEQYRVSLKLTSGALRTFFLSPGSKSAHPFRTLEEKITTFLQVF
back to top

mRNA from alignment at H-paniculata_contig30259:1826..1993-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30259.8207.1 ID=mRNA_H-paniculata_contig30259.8207.1|Name=mRNA_H-paniculata_contig30259.8207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig30259:1826..1993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACATTTCGTGGTCTATAACCGGATGCATCCGACGGAGCAGTACCG
CGTGAGCCTCAAGCTGACCTCGGGGGCGCTCCGCACGTTTTTTCTATCCC
CTGGATCGAAGAGCGCCCACCCCTTCCGGACGTTGGAGGAAAAAATCACC
ACTTTTTTGCAGGTATTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30259:1826..1993-

>mRNA_H-paniculata_contig30259.8207.1 ID=mRNA_H-paniculata_contig30259.8207.1|Name=mRNA_H-paniculata_contig30259.8207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig30259:1826..1993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCGACGGAGCAGTACCGCGTGAGCCTCAAGCTGACCTCGGGGGC
GCTCCGCACGTTTTTTCTATCCCCTGGATCGAAGAGCGCCCACCCCTTCC
GGACGTTGGAGGAAAAAATCACCACTTTTTTGCAGGTATTTATGCATCCG
ACGGAGCAGTACCGCGTGAGCCTCAAGCTGACCTCGGGGGCGCTCCGCAC
GTTTTTTCTATCCCCTGGATCGAAGAGCGCCCACCCCTTCCGGACGTTGG
AGGAAAAAATCACCACTTTTTTGCAGGTATTT
back to top