mRNA_H-paniculata_contig30243.8201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30243.8201.1
Unique NamemRNA_H-paniculata_contig30243.8201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30243.8201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30243contigH-paniculata_contig30243:5..1254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1250
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.480687-UTR-H-paniculata_contig30243:4..7831622929928.480687-UTR-H-paniculata_contig30243:4..783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30243 5..783 +
1691481073.6367016-UTR-H-paniculata_contig30243:4..7831691481073.6367016-UTR-H-paniculata_contig30243:4..783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30243 5..783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.4927945-CDS-H-paniculata_contig30243:783..12541622929928.4927945-CDS-H-paniculata_contig30243:783..1254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30243 784..1254 +
1691481073.6474106-CDS-H-paniculata_contig30243:783..12541691481073.6474106-CDS-H-paniculata_contig30243:783..1254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30243 784..1254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30243.8201.1prot_H-paniculata_contig30243.8201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30243 784..1254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30243.8201.1

>prot_H-paniculata_contig30243.8201.1 ID=prot_H-paniculata_contig30243.8201.1|Name=mRNA_H-paniculata_contig30243.8201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MLIDGGKLGELGVGAGEESWISDSGATGHAAPSAPHMSSYRQVKETLRIA
SGQVIPIIGQGNLSIMFRTSDRNVSLAVLNVAHAPELCWGSLRNKCAFET
GGVLDLPSNGRLNYLHGSRNDLNTSPSENANAVIALGSAPVKPASPEDIN
DFHCSHG
back to top

mRNA from alignment at H-paniculata_contig30243:5..1254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30243.8201.1 ID=mRNA_H-paniculata_contig30243.8201.1|Name=mRNA_H-paniculata_contig30243.8201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1250bp|location=Sequence derived from alignment at H-paniculata_contig30243:5..1254+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGATTTACGGATCTAGTCGGGCCTTCGGGTAACCGACACACGAACCC
GGTTTCGGGGTAAGTGTTGGGCAAAGGTTTCCTCCCCTCCTTTCAAGGAC
AAACCCCCCCCCAAAAAACAAAACAAAACGGAAGGTGGGCAGTCACCACC
CTGGGGATCAAGACGAGCCCTGGGACGGGCTGCAGCACAGCCTAACATGG
TGGGGCAGGATCGAGATCAGCGAATCAGCAGTGACGGGGCTAGGAGTACA
AACCCCGACGGTGAATTACTGGGTGTGTTTGGTCGAAGGACTGTAGAAGG
AAACTATGCGTCGACAATGCCTGCCACAGTGATGGGTTAATTGAAACCGA
AGACTCCGTCCTTTTCTGGTAACTGGGAAGATTTTGCCCGGTTCGAGATC
GAAATTATTAATTTCGCCAAGATGCATGGGTGTGAAGAAGCTTTCGTGAA
ATATGTATCCGTGCCCCTGGGTGAAACAGAAAGGTTGCTGCAAAGTTTAG
TGACTGAAGGTTACAACAGACGGCGAGTGGAGAGCCATCGTTGGGCCTGG
CAACTTTTATGTTCTGCGTTGAGAGGATATGACTTGAAAGATATGAGAGG
GGCCATGTCACCTCGGCAGGTCTGACCAGGTGCGTCAAGGATGCGGGGGA
AAGGGGCGTACCTCGTGCGTGTGCCCTAGCCTGCATGAGACGACCGTGGT
GGCTGTTCAAGAGCAAGTGTCTTCGGATGGTAAGGAGTGTGACGCCTTTA
TCGCCGAAGACTTTGCAGGCGAGTTTGGCATGCTTATAGACGGGGGTAAG
CTGGGAGAGCTCGGCGTTGGTGCAGGGGAAGAGTCGTGGATCAGTGATAG
TGGGGCGACTGGTCATGCTGCACCATCTGCGCCTCACATGTCCAGCTATC
GGCAAGTCAAGGAGACGCTGCGGATTGCGTCAGGGCAGGTGATCCCGATT
ATTGGTCAAGGAAACCTGAGCATAATGTTTAGGACGAGTGATAGAAATGT
GTCTCTCGCGGTTCTGAATGTCGCACATGCTCCTGAACTATGTTGGGGAT
CATTAAGGAATAAATGTGCATTTGAGACTGGAGGAGTACTGGACTTGCCT
TCGAATGGTAGACTGAATTATTTACATGGAAGCCGAAACGACTTGAATAC
TAGCCCCTCTGAAAACGCCAATGCCGTAATTGCTCTGGGCAGTGCGCCCG
TCAAACCCGCTTCTCCCGAAGATATCAACGACTTCCACTGCTCGCACGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30243:5..1254+

>mRNA_H-paniculata_contig30243.8201.1 ID=mRNA_H-paniculata_contig30243.8201.1|Name=mRNA_H-paniculata_contig30243.8201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig30243:5..1254+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTATAGACGGGGGTAAGCTGGGAGAGCTCGGCGTTGGTGCAGGGGA
AGAGTCGTGGATCAGTGATAGTGGGGCGACTGGTCATGCTGCACCATCTG
CGCCTCACATGTCCAGCTATCGGCAAGTCAAGGAGACGCTGCGGATTGCG
TCAGGGCAGGTGATCCCGATTATTGGTCAAGGAAACCTGAGCATAATGTT
TAGGACGAGTGATAGAAATGTGTCTCTCGCGGTTCTGAATGTCGCACATG
CTCCTGAACTATGTTGGGGATCATTAAGGAATAAATGTGCATTTGAGACT
GGAGGAGTACTGGACTTGCCTTCGAATGGTAGACTGAATTATTTACATGG
AAGCCGAAACGACTTGAATACTAGCCCCTCTGAAAACGCCAATGCCGTAA
TTGCTCTGGGCAGTGCGCCCGTCAAACCCGCTTCTCCCGAAGATATCAAC
GACTTCCACTGCTCGCACGGCATGCTTATAGACGGGGGTAAGCTGGGAGA
GCTCGGCGTTGGTGCAGGGGAAGAGTCGTGGATCAGTGATAGTGGGGCGA
CTGGTCATGCTGCACCATCTGCGCCTCACATGTCCAGCTATCGGCAAGTC
AAGGAGACGCTGCGGATTGCGTCAGGGCAGGTGATCCCGATTATTGGTCA
AGGAAACCTGAGCATAATGTTTAGGACGAGTGATAGAAATGTGTCTCTCG
CGGTTCTGAATGTCGCACATGCTCCTGAACTATGTTGGGGATCATTAAGG
AATAAATGTGCATTTGAGACTGGAGGAGTACTGGACTTGCCTTCGAATGG
TAGACTGAATTATTTACATGGAAGCCGAAACGACTTGAATACTAGCCCCT
CTGAAAACGCCAATGCCGTAATTGCTCTGGGCAGTGCGCCCGTCAAACCC
GCTTCTCCCGAAGATATCAACGACTTCCACTGCTCGCACGGC
back to top