mRNA_H-paniculata_contig30243.8202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.190e-14 Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RADG PS+V V
Sbjct: 154 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVV 235
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.560e-14 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RA+G PS+V V
Sbjct: 20 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVV 101
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5KKV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV4_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.120e-14 Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG S GG Y L +RDD TR +YF + +SDAAE+FER+LA+ RADG PSEV V
Sbjct: 11 KPIPNRTSTRAVKKLQRVFVDLSGRARVLSLGGKWYTLVVRDDCTRWNRVYFLKNKSDAAEAFERYLAENRADGAPSEVMVV 92
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5JF07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF07_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 6.730e-14 Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RADG PS+V V
Sbjct: 359 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVV 440
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.040e-13 Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RADG PS+V V
Sbjct: 201 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVV 282
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.510e-13 Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 2
Query: 2147 LVGLGMEQCMVEPCVFREMVDDKVSLMLSVHVDVMVVAGKEVDCNRIFDALSQNVPMTNLGELACYIGCLFDID----------------LMERFEITCVFELPATYLAGLDPRRDDEEDGD 2464
LV G EQC +PCVFR+MVD+ V +++ +HVD ++VAG + DC + + ++ P NLGE + GC + D +++RF++ +PA+ L P+RDDE+ G+
Sbjct: 473 LVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRDDEKAGE 594
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 5.440e-13 Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++D +TR +YF + +SDAAE+FER+LA+ RADG PS+V V
Sbjct: 326 KPIPNETSTRAVKKLQRVFVDLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVV 407
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 6.060e-13 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RA+G PS+V V
Sbjct: 51 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVV 132
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 7.170e-13 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RA+G PS+V V
Sbjct: 373 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVV 454
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 7.450e-13 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 2
Query: 1013 KPIKRSTNLRADNKLGKSFVDLSGPKSFESRGGMSYVLFIRDDHTR*MWIYFPRKRSDAAESFERWLADVRADGVPSEVANV 1258
KPI T+ RA KL + FVDLSG +S GG Y L ++DD+TR +YF + +SDAAE+FER+LA+ RA+G PS+V V
Sbjct: 360 KPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVV 441 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30243.8202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30243.8202.1 >prot_H-paniculata_contig30243.8202.1 ID=prot_H-paniculata_contig30243.8202.1|Name=mRNA_H-paniculata_contig30243.8202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MLIHYWSLTLAAKPYFNTTCLVGELVGLGMEQCMVEPCVFREMVDDKVSLback to top mRNA from alignment at H-paniculata_contig30243:5..2905+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30243.8202.1 ID=mRNA_H-paniculata_contig30243.8202.1|Name=mRNA_H-paniculata_contig30243.8202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2901bp|location=Sequence derived from alignment at H-paniculata_contig30243:5..2905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30243:5..2905+ >mRNA_H-paniculata_contig30243.8202.1 ID=mRNA_H-paniculata_contig30243.8202.1|Name=mRNA_H-paniculata_contig30243.8202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig30243:5..2905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |