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Homology
BLAST of mRNA_H-paniculata_contig3024.8199.1 vs. uniprot
Match: A0A6H5KDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE7_9PHAE) HSP 1 Score: 174 bits (442), Expect = 2.110e-44 Identity = 90/172 (52.33%), Postives = 120/172 (69.77%), Query Frame = 2
Query: 878 NALDEIDHPDLTGALAALHGYVTNGGDSVMLEKAYDLARSVAGSKHDVRVAFDACRIALAAGYVHSLQNSTAELAHEFVLYHSLPRLAKSLEPYWNRRGHWISLAEELEWEQSMQSLLEVTSSVSLMTRVTDIIAVMDAEVGSGVAEAIGRFCVANPDMVSEYPNVAKLCVK 1393
N L+E DHP L GA+AALHGY + GD+V LEKAY+LAR+VAGSKH + V+FDACR+ LA GYVH L +LA +F HSLP+LA+SL+PYW+R + EE EWE+ + SLLEVTSS++LMT DI V+D + VAEA+G + V P+ + +Y +V C++
Sbjct: 169 NPLEEFDHPALQGAIAALHGYAASDGDTVFLEKAYELARAVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDLADKFAHQHSLPKLAQSLKPYWSRSPS-PTPDEEAEWEECVSSLLEVTSSIALMTDERDIWTVLDRDPFGEVAEAMGLYLVRRPNALQQYQDVGSACLR 339
BLAST of mRNA_H-paniculata_contig3024.8199.1 vs. uniprot
Match: D7G8S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S7_ECTSI) HSP 1 Score: 169 bits (429), Expect = 9.810e-44 Identity = 87/172 (50.58%), Postives = 118/172 (68.60%), Query Frame = 2
Query: 878 NALDEIDHPDLTGALAALHGYVTNGGDSVMLEKAYDLARSVAGSKHDVRVAFDACRIALAAGYVHSLQNSTAELAHEFVLYHSLPRLAKSLEPYWNRRGHWISLAEELEWEQSMQSLLEVTSSVSLMTRVTDIIAVMDAEVGSGVAEAIGRFCVANPDMVSEYPNVAKLCVK 1393
N L+E DHP L GA+AALHGY + GD+ LEKAY+LAR+VAGSKH + V+FDACR+ LA GYVH L ++A+ F HSLP+LA+SL+PYW+R + EE EWE+ + SLLEVTSS++LMT DI V+D + VAEA+G + P+++ Y +V C++
Sbjct: 76 NPLEEFDHPALQGAVAALHGYAASDGDTSFLEKAYELARTVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDMANNFAHQHSLPKLAQSLKPYWSRSPS-PTPDEEAEWEECVSSLLEVTSSIALMTDEGDIWTVLDRDPFGEVAEAMGLYLARRPNVLQHYQDVGSACLR 246
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-22_002840.1 |
| Exons | 5 |
| Model size | 2825 |
| Cds size | 1242 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3024.8199.1 >prot_H-paniculata_contig3024.8199.1 ID=prot_H-paniculata_contig3024.8199.1|Name=mRNA_H-paniculata_contig3024.8199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
MSNMGVRNHITAHLVLDLMSTCCTKTSTARAASRNTHNGNHSKIGNNNMS QRVQNLRHAIMMSQREESPSCSTSVSDCSSSSIDCADDTVTSISNSNSSD NNSSFASSSAHTEKAPSSWREFPEPDGRSSECSDELFEGEEEDEEVDRSR AGAAAELRSLSCNTNMGLRYPQRQQQQQQQQQQLATTNDPSQDRHRQRRD LDSDCSHGTKDRSSRTLNALDEIDHPDLTGALAALHGYVTNGGDSVMLEK AYDLARSVAGSKHDVRVAFDACRIALAAGYVHSLQNSTAELAHEFVLYHS LPRLAKSLEPYWNRRGHWISLAEELEWEQSMQSLLEVTSSVSLMTRVTDI IAVMDAEVGSGVAEAIGRFCVANPDMVSEYPNVAKLCVKRHLSAQQKASA RRQQRQTNIYYSE* back to topmRNA from alignment at H-paniculata_contig3024:6608..12504- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3024.8199.1 ID=mRNA_H-paniculata_contig3024.8199.1|Name=mRNA_H-paniculata_contig3024.8199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5897bp|location=Sequence derived from alignment at H-paniculata_contig3024:6608..12504- (Halopteris paniculata Hal_grac_a_UBK monoicous) ACACATCAAGTAAACTCAAGTCAGAAAACGCTCAGAACAGACCTTCTGAC
TGGTTTCCATTCTTCTTATTAAAAGCACAACCGCCCGTGCACCCATCAGC
ACCAACCCCGTCGAAAGACAACACACACCTCGCCACTTCAAACCAATCCA
CCCATACATCTACCGCCCCGCACATCTCGCCCACGCACTGAGGCGCCACA
CCCTCACCAATCTCAAGTTAGCACTGATGAGCAACATGGGCGTCCGAAAT
CACATCACGGCACACCTTGTGCTCGATCTGATGAGTACGTGCTGTACTAA
AACATCTACAGCGCGAGCAGCGTCACGAAACACCCACAACGGCAATCACT
CAAAAATCGGTAACAACAACATGTCTCAACGGGTGCAAAACCTACGGCAC
GCGATCATGATGTCGCAGCGGGAGGAGTCCCCCTCGTGCTCAACTTCAGT
TTCCGACTGCTCCTCATCGAGCATTGATTGCGCTGATGACACTGTAACCA
GTATTAGCAACAGCAACAGCAGCGACAACAATAGCTCCTTCGCATCTTCC
TCCGCTCATACCGAAAAAGCACCTTCATCATGGAGAGAATTCCCGGAGCC
AGATGGTCGCTCGTCAGAGTGTAGCGATGAGCTGTTTGAAGGCGAGGAGG
AGGATGAAGAGGTTGACCGGAGTCGTGCCGGAGCAGCTGCAGAGTTGAGG
TCTTTGTCCTGCAACACCAACATGGGTTTGAGGTACCCCCAGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGTTGGCAACCACAAATGATCCCTCAC
AAGACAGGCATCGCCAAAGAAGAGACCTTGATTCAGATTGTTCTCATGGT
ACGAAGGACAGGAGCAGGTGTGTTCGTACCGCAACAAGTGCACTAAGAAA
CGTATCTAACAAGCTTTCTGTGAATATTACTACAGTTCTATTTAGTAGAA
CAGCTGTTGGACAATCAGAGTTCTACTATGGGTTGTGAGTGCTGTGTGTT
TCCCAAGGGAACCGTGGAATCTGGGCTGGTTTGCAGCTTGTTCGTGAAGC
CTCTTTTTCAAATATTGAATATTGTAATTGTACTATTCTCAGGTGACATG
GAATTGTGTCGTTCAGAACAACTCATCGATGTCCTTCAACATTCTCTTTC
GTCAGGCAGCACAAGTTCATGCGATGCAAGTCTAGTTTGAAAGAAGTTAT
CAGCTGGGGGCGTTAAATCAAGCTACATGCTGCCGCCTACCACGATATGC
AAGCGGGATATACTGGGTCTTTACCCTTGATTCAGCCTTGTGGGAATTTG
CGAATATTGATTCTTGTTGTTCAAGCAGTGTTGAGTGAACGATAAATCAT
ACGCTGGATAATTTAGCAGGTCGTGCAGATGGAAGATAAACGCGACTATT
TTGCTTTTTAGAAACAATGTCTTCAACACTCCGTATGGGTTGATTTATTC
GTTTCTACTTTGCATGAGCTCACTCGCAGACGTTGCTTCATGTATATACG
TGATGTATAATCGGCGTCGCAGGGCATATGCACGTGGAGAATCATCACGC
GTTTTCATGCCCCCCTCGAATGGTGACAATTGTCACATGATTGTCGCGAC
CTTCCTTGCAGCCAATAGTTATTTGTGTAAGTTACCAGCCAAACTCTTTC
TGCGGTCAACACGTGCCATTGAACACGATGACGCACAACCTTATCAGCCC
TGCCAGTATGCAACTGGTGTTCACGTCCTAATTATCGTAGCTCCGAAAAT
CCGTTGATTTAAATATATCGCATCTTGTACGAATAAGTACTCTACAAACA
GAACATGGTTACTTTGTCATCTTCCACTACGTCCGTTGTACCCATTTACA
ACGGCATCCGCTGGTCGCGAGAGCTTGTTGGGGAATGACCTAGGGAATTA
TTCGTATTTATCCGTTCCACGTTCTCCTTTGATATATTTTCTGTACATGA
AAATACATCGCACCAAAATGTGTCTGTACAAGCATCAAAACGTCATAGTA
CTCGAACCCAAAACCATATGGAAGTAACTGTTCATAAAGTACACCCGAAC
CCAAAATGATATAAAAGTAATGAGGATAGGGAAATCTATTATATGTGTAT
ACTTCGTGCAACATCAAGCACCTGGGCAAGTACATCGCCACGGTGCACAG
CTCTCTCTCTTTCTCTCTATCTCGCTCTCTCTATCTCGATCTCTTTCGCA
TGATGTAACCCTGTACGAGCCAGGCGTGAACTTCTGCGGCGTTTTGAACG
TTTATTCAAAGTAACACTGTGTAAACCCGATCGAGCTCTATTCACCCCGA
TTTTCGATCTCACTATTTTGCTGAACGACTCTCTTAATGTACCAAATCTT
GCAGCAGAACCTTGAATGCTCTCGACGAGATTGATCACCCGGATTTGACG
GGAGCCTTGGCCGCTCTCCACGGGTACGTGACGAACGGTGGTGACTCCGT
GATGCTCGAGAAGGCGTATGACTTGGCGCGGAGCGTTGCAGGGTCAAAAC
ACGACGTCCGCGTCGCCTTTGATGCCTGTCGGATAGCTCTGGCTGCGGGG
TAAGTTTGAAAAACGTTGTTCAAACTTGCTATTATTAGAGCTTCAGGAGT
CTTTGTAGTTGTCGTGGGCATGTTAGGGTGAGAAATGGCGGCTGATTTTG
ATATAAAATACCGTGAGTTCTCCACGCACTCCTTCTCTGCAATAAAAAAC
AGAGAAATTGGCCTCTTGATGAGATCAGGATGGCAACAAAAAATGTTGCC
GACGTTTTGAATTATCTCACCATCCCGCTCTGTGCTGCAGGGGTGCGTTC
AGTCATGCGTAATCGAAAACCGCCAAGGAAGGCGGTATGTACACCAGACG
CAAACCGGCCCAAATTTGTAGTCGTTGCCGTAGCTTCGTCGTTGTATGTG
CCTATGGTCTGCCGAGAACATGGATTGCCCTGGACGCTACCCAACCAGCG
TTGCAACCCCAACCCTGAGTTCCTAGAGTGGCGTCTGTCCGTTCTCGATT
CGCCTGTATGTACATGTATAGGTATGTGCACAGCCTGCAAAACTCAACAG
CTGAGCTAGCGCACGAGTTTGTGCTTTACCACAGCCTTCCTAGGCTCGCG
AAATCGCTGGAGCCGTACTGGAATCGTAGGGGACACTGGATTTCTCTAGC
GGAGGAGCTTGAGTGGGAGCAGTCTATGCAATCCCTGCTCGAGGTCACGT
CGAGCGTTTCTCTCATGACAAGGGTGACTGACATCATCGCGGTGATGGAC
GCCGAAGTGGGATCTGGTGTGGCCGAGGTAAGGAATACAGTGAATGTCTA
ATTAGAGTTTGAACAGTGAAATACTGTAGATCCACCTGTCAAAAAAGCGC
AGATGTGTTTCAAGAGGTGTTCCTCTTTTTTAGAAGAAATGATGAACAAC
GAAAGGGGTGACCGATGTTTTTGAAAGGGGGACCAAAACCCCAATATCTA
CTGAGAGGGCGAAACATGAAGAGAGTATATACGTGAGACAGCGGACACTG
CACTGCACCTGGTCTGTCCCAATCGCGACCGATAAATTTATAGTTGAGAA
TAAGCGACCACACCAGCAACTCTCGATACTCACTCTCCGGTTGCACATGT
TTTCCCCCTAAGAGTTTCACCTACCCTCGTGGACAGCCGTATGACCCTGC
AAGCGCCGCCTTTTTGCGAGAGGTTTGCTGGTGCCGACCACAATAGACCG
GATGACCATCAATGTCGAAACGCATTAGCCATAGCGAAGCAAGCATACGC
GTATAGGCCTCCGAACTAGCGGTGCTGGAATAGTTTTATCACGCTTGTTT
TGGTATCATTTCGTTTTATTCAAAACGTCCCCGAGCAAAAACATACACAA
CAAACTTAGAGTTTACTGCGAACCGTGTCCGATGTATTCGCCGCCCACAT
CGTCGTGGCCTCTTGTTTTTGTCATAATCTATCCCCAGGCAATCGGCAGG
TTTTGTGTCGCCAACCCTGACATGGTATCGGAGTACCCGAACGTGGCAAA
GCTATGCGTAAAACGGCATCTCTCCGCGCAGCAGAAAGCTTCGGCACGGC
GGCAGCAGGTGATCGATTTGCTGAAGCTGTACTCAATTGAGCTTTTGTTT
TAAAGAATGCGGGTTCGGTAGCGAGTATCTAGTCAGCGTTCATTTGAGGC
ACTCGGTTGAAGACCATGGACGTGATGCTGTGAGCGAAGACGCACTTGAT
ACTGGCAGGGGTGGATTAGTGCAAGCCCGTGGTACAGGAGGATCAAAATG
ATGAGCGCGGGGTGCGATACGGGTAAGGTGAACCGCACCCATGACAGAAC
AATCCCTTCTTGTGTTTGGGTTGTGCTGAGAACTGGTTCTCGCCTTGAGG
CAAGTTGGCCTCAGTGATGTCATGTATGTACTTTTTTTGTTACACTAGGG
GCGGGACTTTCACGTGCTCGCGAATTAAATCCGTGTCTTCTTTGCTCACC
ATATTCCTGTCCCCGCGTCTGTACTTATTTCACGCTGTCCTCGCATCTGA
CGATTTTTAGAGACAAACCAACATCTACTACAGCGAATGAGAAGGAAACT
ATTCCAACACGAGAGGGGGAGGCGCTTCTGAGCTCGACTACAAGGTTGCG
TTGTCACAGCCACATTGCTTTCAAGCACGAAAGACCTCATCATGTAATGA
CAGCTTCCACGGGGGTACTGTGGTGCGCTTGTACTTTGACTGTATACACT
ATTTATTAAATACACGACGAAGTACGTTGTGGAAATTAGCTGTCGGCGGG
CAACTTCTGAGCCCGCTCTTCTGCAAGATCATTATTCATGAAAGTTTGCA
TTAAATTGCCGGGTCGCGAATGTGGGGCTATGCGTGGATGCGTGAATGTT
TCTTGCCACTGGTGGAAGATGACGTGTCGTATGTTAGTAGGGATGTGCCG
GATAAGTCAGCGTGACGCGACCCTTGCAGTGTGGTATTCGGTTCTCGCCG
TTTATGTTGTTGCCTGGTAATAGTGATATGGGTGACTAGTCAATAGTGTG
TCTCGGGCAAGACTCTAGAGGTGACCTACGGCGTACTAGTTCACTTTCGT
CCTGACGACGCTCGGGCACGTAAGGCCTGGCTTTGTTGGCGTGTGTGTTC
ACAATGGATTTTTGCGTAAAGTGCTGTTAGTTGACTTATTCCGATAATTC
ATTATTTGTAGTTTTATACCCGTCTATCACTGATAAAAAAAAGCGCATTG
AGGGGTAATGTGTTTGTGACTTCGGTATCGTTGTGTTGTAATAGACCAGA
GGGGAGTAAGGTGGACCGTTGTAAGTTTCTCCTCCTATGTACTGTCGAGA
GTTTTGTTTTCATTTGGTTGTTGGGATGATACGTGAAAAAGCAGGATTAA
ATGTGTATCTCTACCGATTTTCACGGTGCAACCTGGAACTGTGCATTTGT
TTTTGTGTCTTCGGGTGTATAAAAATATACAGCCCGTTGTTGGCATTATT
GTACTGCGTTGTGGGTCAAAACAGCATTTTCGCTGTTTGTGCTTCTATGT
TCTTGCGATTCTGTTCTTTGCTATAAATTGTGATTCAGTTTTGTTTACTT
GTGAACACCTTGTGTGGATCTGGGGTGACTTTATTCAACAGCTATAATTG
CAGTAACTGCAAGATTGACGGGGGTGGATATACACGAGAGTCTAGACCAT
CTGGGCATCGGACACGGACAGCAGCGAACGGCATAAGGTTTATGATCAGG
TTTACTAGTTGTCATGTATCTCGGTGTCATGTACGTGTTGCGTAGATTCT
ACGAGCGAGCGTGGGCCTGTCCTCGCTGTGTTGAACAGACTGATGCGTCT
CTTGTTGGGGTATACGCTGTTGTTGATAAAAACATTATTCGAATGTGGTG
CAGTGCGCTGCAACCCTGAATCCAAAACATTGTATGTAACCGTGCTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3024:6608..12504- >mRNA_H-paniculata_contig3024.8199.1 ID=mRNA_H-paniculata_contig3024.8199.1|Name=mRNA_H-paniculata_contig3024.8199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2484bp|location=Sequence derived from alignment at H-paniculata_contig3024:6608..12504- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGCAACATGGGCGTCCGAAATCACATCACGGCACACCTTGTGCTCGA TCTGATGAGTACGTGCTGTACTAAAACATCTACAGCGCGAGCAGCGTCAC GAAACACCCACAACGGCAATCACTCAAAAATCGGTAACAACAACATGTCT CAACGGGTGCAAAACCTACGGCACGCGATCATGATGTCGCAGCGGGAGGA GTCCCCCTCGTGCTCAACTTCAGTTTCCGACTGCTCCTCATCGAGCATTG ATTGCGCTGATGACACTGTAACCAGTATTAGCAACAGCAACAGCAGCGAC AACAATAGCTCCTTCGCATCTTCCTCCGCTCATACCGAAAAAGCACCTTC ATCATGGAGAGAATTCCCGGAGCCAGATGGTCGCTCGTCAGAGTGTAGCG ATGAGCTGTTTGAAGGCGAGGAGGAGGATGAAGAGGTTGACCGGAGTCGT GCCGGAGCAGCTGCAGAGTTGAGGTCTTTGTCCTGCAACACCAACATGGG TTTGAGGTACCCCCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT TGGCAACCACAAATGATCCCTCACAAGACAGGCATCGCCAAAGAAGAGAC CTTGATTCAGATTGTTCTCATGGTACGAAGGACAGGAGCAGATGAGCAAC ATGGGCGTCCGAAATCACATCACGGCACACCTTGTGCTCGATCTGATGAG TACGTGCTGTACTAAAACATCTACAGCGCGAGCAGCGTCACGAAACACCC ACAACGGCAATCACTCAAAAATCGGTAACAACAACATGTCTCAACGGGTG CAAAACCTACGGCACGCGATCATGATGTCGCAGCGGGAGGAGTCCCCCTC GTGCTCAACTTCAGTTTCCGACTGCTCCTCATCGAGCATTGATTGCGCTG ATGACACTGTAACCAGTATTAGCAACAGCAACAGCAGCGACAACAATAGC TCCTTCGCATCTTCCTCCGCTCATACCGAAAAAGCACCTTCATCATGGAG AGAATTCCCGGAGCCAGATGGTCGCTCGTCAGAGTGTAGCGATGAGCTGT TTGAAGGCGAGGAGGAGGATGAAGAGGTTGACCGGAGTCGTGCCGGAGCA GCTGCAGAGTTGAGGTCTTTGTCCTGCAACACCAACATGGGTTTGAGGTA CCCCCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGGCAACCA CAAATGATCCCTCACAAGACAGGCATCGCCAAAGAAGAGACCTTGATTCA GATTGTTCTCATGGTACGAAGGACAGGAGCAGCAGAACCTTGAATGCTCT CGACGAGATTGATCACCCGGATTTGACGGGAGCCTTGGCCGCTCTCCACG GGTACGTGACGAACGGTGGTGACTCCGTGATGCTCGAGAAGGCGTATGAC TTGGCGCGGAGCGTTGCAGGGTCAAAACACGACGTCCGCGTCGCCTTTGA TGCCTGTCGGATAGCTCTGGCTGCGGGCAGAACCTTGAATGCTCTCGACG AGATTGATCACCCGGATTTGACGGGAGCCTTGGCCGCTCTCCACGGGTAC GTGACGAACGGTGGTGACTCCGTGATGCTCGAGAAGGCGTATGACTTGGC GCGGAGCGTTGCAGGGTCAAAACACGACGTCCGCGTCGCCTTTGATGCCT GTCGGATAGCTCTGGCTGCGGGGTATGTGCACAGCCTGCAAAACTCAACA GCTGAGCTAGCGCACGAGTTTGTGCTTTACCACAGCCTTCCTAGGCTCGC GAAATCGCTGGAGCCGTACTGGAATCGTAGGGGACACTGGATTTCTCTAG CGGAGGAGCTTGAGTGGGAGCAGTCTATGCAATCCCTGCTCGAGGTCACG TCGAGCGTTTCTCTCATGACAAGGGTGACTGACATCATCGCGGTGATGGA CGCCGAAGTGGGATCTGGTGTGGCCGAGGTATGTGCACAGCCTGCAAAAC TCAACAGCTGAGCTAGCGCACGAGTTTGTGCTTTACCACAGCCTTCCTAG GCTCGCGAAATCGCTGGAGCCGTACTGGAATCGTAGGGGACACTGGATTT CTCTAGCGGAGGAGCTTGAGTGGGAGCAGTCTATGCAATCCCTGCTCGAG GTCACGTCGAGCGTTTCTCTCATGACAAGGGTGACTGACATCATCGCGGT GATGGACGCCGAAGTGGGATCTGGTGTGGCCGAGGCAATCGGCAGGTTTT GTGTCGCCAACCCTGACATGGTATCGGAGTACCCGAACGTGGCAAAGCTA TGCGTAAAACGGCATCTCTCCGCGCAGCAGAAAGCTTCGGCACGGCGGCA GCAGGCAATCGGCAGGTTTTGTGTCGCCAACCCTGACATGGTATCGGAGT ACCCGAACGTGGCAAAGCTATGCGTAAAACGGCATCTCTCCGCGCAGCAG AAAGCTTCGGCACGGCGGCAGCAGAGACAAACCAACATCTACTACAGCGA ATGAAGACAAACCAACATCTACTACAGCGAATGA back to top
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