mRNA_H-paniculata_contig3024.8198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 279 bits (714), Expect = 8.400e-84 Identity = 159/417 (38.13%), Postives = 239/417 (57.31%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLPPET*H--------LCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+A T+R V +L D EL+ MDVD AYL + +EE++++K PP +C S+YGLKQSGRNW+ +D + G GL PS DPCLY GE ++V +YVDDL+I R D+FK + SR F M+DL L +LG+G++R+R N + ISQ YI +L ++G +C+S TP+EG + + + N EY +VGSL+YA+ +RPD+A+AV + ++ ++ KR+ R L D+G+ G + G L G+ DAD+A D ++R+ST+GY FTL+ G I W +++ SS+E+ ++A A VY+ LL +GF + T + EDN++ I +G H RTKHI VR+H ++E V + L Y+ T +QL DI
Sbjct: 279 APVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFK-QDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 691
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 266 bits (680), Expect = 7.250e-81 Identity = 154/411 (37.47%), Postives = 232/411 (56.45%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP-----PET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLV-IAGRREKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSG-NPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
SP+ R ++RT+ S +++ + MDV A+LN +EEE++++ P P HL C S+YGLKQS R W+ T + + IG ST+DPC++ + E ++AVYVDDL+ I E + E K + ++M+D+G LS +LGI V +D+ N+++ + Q YI VL++YG D+ TP + VK+ + + NP Y+ +VGSL+YA+ +RPD+A AV ++ P + KRI R L +L + ++ L GF DADWA D +DR+STTG +F L GGA+SW S+K S++EA YVA +A E +L LL +G T + EDN+ AI + K H RTKHI +R+H I+E V+ G + L+Y T + DI
Sbjct: 83 SPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELE---ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQ-RSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT--PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADI 487
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 271 bits (692), Expect = 1.020e-80 Identity = 159/412 (38.59%), Postives = 236/412 (57.28%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVK-----LPPET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRRE-KVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKI--LAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
SP+AR ++RTV +L A+H +L MDV A+LN ++EE+++K + HL C S+YGLKQS R WN+ LD + +G +T DPC+Y ++EGGE ++AVYVDD+++AG+ + K++E K + F+M+D+G L LG+ V + I I Q +Y + VL+R+G + + TPV K+ A +S+R + Y+ VG L+Y ST +RPD+AYAV AR DP + KRI R L+ D+G+ G G+ DADWA D +DRKST+GYVF ++ AISW S+K S++EA Y+A A E V+L LL + G + EDN++AI + K + H R KHI +++H I+E V + L+Y T + DI
Sbjct: 67 SPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEHLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTG-PMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADI 474
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM) HSP 1 Score: 277 bits (709), Expect = 3.460e-80 Identity = 154/419 (36.75%), Postives = 236/419 (56.32%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKV-DEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+A+ ++R V SL AK+ +L MDV A+LN ++E++++ P P+ H+C S+YGLKQS R WN T+DDF++ +G +D C+Y RD G+ I VA+YVDDLV+A +++ + KH S+ F M DLG L LG+ ++ D + +T+ Q +++ +L ++G + + TP + +K L N G E YR VG+LMY +RPD+A AV ++ DPC KR+ R L P G+ + + G+ G+ DADWA D E R+ST+GY F +NGG ISW S+K + SS+EA Y+A +A E+V+L L +G + ++EDN+ +I L K H RTKHI +R+H ++E V G + L+YV T + L D+
Sbjct: 741 APVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 1153
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM) HSP 1 Score: 260 bits (665), Expect = 1.490e-79 Identity = 146/394 (37.06%), Postives = 220/394 (55.84%), Query Frame = 1
Query: 76 MDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDEF-KHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
MDV A+LN ++E++++ P P+ H+C S+YGLKQS R WN T+DDF++ +G +D C+Y RD G+ I VA+YVDDLV+A +++ E KH S+ F M DLG L LG+ ++ R + +T+ Q +++ +L ++G + + TP + +K L N G E YR +VG+LMY +RPD+A AV ++ DPC KR+ R L P G+ + + G+ G+ DADWA D E R+ST+GY F +NGG ISW S+K + SS+EA Y+A +A E V+L L +G + ++EDN+ +I L K H RTKHI +R+H ++E V G + L+YV T + L D+
Sbjct: 1 MDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 388
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 273 bits (699), Expect = 1.580e-79 Identity = 160/417 (38.37%), Postives = 236/417 (56.59%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP-------PET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+A T+R V +L D EL+ MDVD AYL + +EE++++K P P L C S+YGLKQSGRNW+ +D + G G PS+ DPCLY GE ++V +YVDDL+IA R D+FK SR F M+DL L +LG+ ++R+R + ISQ YI +L ++G +C+ TP+EG + + + K SEY +VGSL+YA+ +RPD+A+AV + ++ + KR+ R L D+GI G G L GF DAD+A D ++R+ST+GY FTL+ G I W +++ + SS+E+ ++A A VY+ LL +GF + T + EDN++ I +G H RTKHI VR+H ++E V + L Y+ T +QL DI
Sbjct: 577 APVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKM--DGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFK-QDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 989
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.660e-79 Identity = 157/417 (37.65%), Postives = 236/417 (56.59%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLPPET*H--------LCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+A T+R + ++ D EL+ MDV+ AYL + +EE+++VK P +C S+YGLKQSGRNW+ +D + G G PS+ DPCLY GE ++V +YVDDL+I RE VD+FK SR F M+DL L +LG+ ++R+R + ISQ +YI VL ++G +CR TP+EG + + + N EY +VGSL+YA+ +RPD+A+AV + ++ + KR+ R L D+GI G G L GF DAD+A D ++R+ST+GY FTL+ G I W +++ + SS+E+ ++A A VY+ LL +GF + T + EDN++ I +G H +TKHI VR+H ++E V + L Y+ T +QL DI
Sbjct: 288 APVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIV-LYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFK-QDEPTVIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 700
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 258 bits (660), Expect = 4.320e-79 Identity = 145/389 (37.28%), Postives = 217/389 (55.78%), Query Frame = 1
Query: 64 ELEGMDVDAAYLNAPVEEELFVKLPP------ET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPS-EYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPD 1206
E E +DVD A+L VEEEL++ P C ++YG KQ+ R WN+ L+ + G G S DPC+Y R + + ++ VYVDDL+I R + ++ E K R F +++LG L LGI + R+R + I ++Q +YI+ + +++G ++C++ TP + K++ P P YR +VG+LMY +T +RPD+A AV + A+ E + KRI + L T DLG+ G G L G+ DA WA D + R+STTGYVF LNG AISW S++ SS+EA Y+A A E V+L LL +G C +TT+F+DN+ I L K H RTKHI +++H ++E V ++ L+Y T + D
Sbjct: 2 EAENVDVDTAFLYGDVEEELYMDQPDGFEDQVNPTKKCLLMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVA-ATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIAD 386
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL) HSP 1 Score: 274 bits (700), Expect = 1.540e-78 Identity = 153/418 (36.60%), Postives = 229/418 (54.78%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIA-GRREKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+A+ ++R + SL A++ L MDV A+LN ++EE+++K P P H C ++YGLKQS R WN T+D+F+ IG D C+Y R++ + V +YVDDL++A ++ + K S F M DLG L LG+ V+RD + +++ Q +++ VL ++G +C+ TP + +K+ + E YR VG+LMY G+RPD+A +V ++ DPC KR+ R L P GI G ++G L G+ DADWA D E R+ST+GYV LNGG ISW S+K + SS+EA Y+A +A E V+L + +G G+ T+FEDN+ AI L K H RTKHI +R+H ++E V G + L+Y T L D+
Sbjct: 949 APVAKFTSIRIILSLAAQYKLVLHQMDVKTAFLNGLLDEEIYMKQPDGYIDPKYPN--HACKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSA--TMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSGNGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADL 1361
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3H8J1_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8J1_PHYRM) HSP 1 Score: 270 bits (689), Expect = 1.600e-78 Identity = 151/419 (36.04%), Postives = 232/419 (55.37%), Query Frame = 1
Query: 1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKV-DEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
+P+ + ++R V SL AK+ +L MDV A+LN ++E++++ P P+ H+C S+YGLKQS R WN T+DDF++ +G +D C+Y RD G+ I VA+YVDDLV+A +++ + KH S+ F M DLG L LG+ ++ D + + + Q +++ +L ++G + + TP + +K L N G E YR VG+LMY +RPD+A AV ++ DPC KR+ R L P G+ + + G+ G+ DADWA D E R+ST+GY F +NGG ISW S+ + SS+EA Y+A +A E V+L L +G + ++EDN+ +I L K H RTKHI +R+H ++E V G + L+YV T + L D+
Sbjct: 479 APVPKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDPGSGKVMVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKNQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMAGDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 891 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3024.8198.1 >prot_H-paniculata_contig3024.8198.1 ID=prot_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp MEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPback to top mRNA from alignment at H-paniculata_contig3024:2118..3404- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3024.8198.1 ID=mRNA_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-paniculata_contig3024:2118..3404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3024:2118..3404- >mRNA_H-paniculata_contig3024.8198.1 ID=mRNA_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig3024:2118..3404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |