mRNA_H-paniculata_contig30221.8196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30221.8196.1
Unique NamemRNA_H-paniculata_contig30221.8196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30221.8196.1 vs. uniprot
Match: D7FLE5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.360e-12
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:  211 AGAGDPYGG---GGEWQTGHNMGSPEGEWETVSHKKTRPKKDRIAAANEANLIPGGLGL 378
            AG  DP+G    GGEWQTG  MGS EGEWETVSHK+++P+K++ AA ++AN IPGGLGL
Sbjct:  249 AGEADPWGAQHAGGEWQTGP-MGSQEGEWETVSHKRSKPRKEK-AAVDDANAIPGGLGL 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30221.8196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLE5_ECTSI7.360e-1264.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30221contigH-paniculata_contig30221:2357..2737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007850.1
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.726459-CDS-H-paniculata_contig30221:2356..27371622929927.726459-CDS-H-paniculata_contig30221:2356..2737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30221 2357..2737 -
1691481073.3112917-CDS-H-paniculata_contig30221:2356..27371691481073.3112917-CDS-H-paniculata_contig30221:2356..2737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30221 2357..2737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30221.8196.1prot_H-paniculata_contig30221.8196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30221 2357..2737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30221.8196.1

>prot_H-paniculata_contig30221.8196.1 ID=prot_H-paniculata_contig30221.8196.1|Name=mRNA_H-paniculata_contig30221.8196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
EEPEAAKKRLRKKEAKKKAAKEAKAAAAAAAGAATFKKGNGGGGGAGANG
SVAAANSGGSRSAGGHTGGDAGAGDPYGGGGEWQTGHNMGSPEGEWETVS
HKKTRPKKDRIAAANEANLIPGGLGL*
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mRNA from alignment at H-paniculata_contig30221:2357..2737-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30221.8196.1 ID=mRNA_H-paniculata_contig30221.8196.1|Name=mRNA_H-paniculata_contig30221.8196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig30221:2357..2737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGCCAGAAGCGGCTAAGAAGCGGCTGCGTAAAAAGGAAGCCAAGAA
GAAGGCCGCCAAGGAAGCCAAAGCGGCGGCAGCCGCTGCCGCAGGCGCAG
CCACTTTCAAGAAGGGCAACGGCGGGGGAGGAGGAGCGGGAGCGAATGGC
TCGGTCGCAGCTGCTAACAGTGGAGGGTCGCGGTCGGCAGGGGGGCACAC
GGGCGGCGATGCGGGCGCGGGGGACCCGTACGGCGGCGGCGGAGAGTGGC
AGACGGGACACAATATGGGCTCGCCAGAGGGGGAGTGGGAAACTGTCTCC
CACAAGAAGACTAGACCTAAGAAGGATAGGATTGCCGCGGCGAATGAAGC
TAATCTCATTCCCGGCGGGCTGGGACTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig30221:2357..2737-

>mRNA_H-paniculata_contig30221.8196.1 ID=mRNA_H-paniculata_contig30221.8196.1|Name=mRNA_H-paniculata_contig30221.8196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig30221:2357..2737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGCCAGAAGCGGCTAAGAAGCGGCTGCGTAAAAAGGAAGCCAAGAA
GAAGGCCGCCAAGGAAGCCAAAGCGGCGGCAGCCGCTGCCGCAGGCGCAG
CCACTTTCAAGAAGGGCAACGGCGGGGGAGGAGGAGCGGGAGCGAATGGC
TCGGTCGCAGCTGCTAACAGTGGAGGGTCGCGGTCGGCAGGGGGGCACAC
GGGCGGCGATGCGGGCGCGGGGGACCCGTACGGCGGCGGCGGAGAGTGGC
AGACGGGACACAATATGGGCTCGCCAGAGGGGGAGTGGGAAACTGTCTCC
CACAAGAAGACTAGACCTAAGAAGGATAGGATTGCCGCGGCGAATGAAGC
TAATCTCATTCCCGGCGGGCTGGGACTATAAGAGGAGCCAGAAGCGGCTA
AGAAGCGGCTGCGTAAAAAGGAAGCCAAGAAGAAGGCCGCCAAGGAAGCC
AAAGCGGCGGCAGCCGCTGCCGCAGGCGCAGCCACTTTCAAGAAGGGCAA
CGGCGGGGGAGGAGGAGCGGGAGCGAATGGCTCGGTCGCAGCTGCTAACA
GTGGAGGGTCGCGGTCGGCAGGGGGGCACACGGGCGGCGATGCGGGCGCG
GGGGACCCGTACGGCGGCGGCGGAGAGTGGCAGACGGGACACAATATGGG
CTCGCCAGAGGGGGAGTGGGAAACTGTCTCCCACAAGAAGACTAGACCTA
AGAAGGATAGGATTGCCGCGGCGAATGAAGCTAATCTCATTCCCGGCGGG
CTGGGACTATAA
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