mRNA_H-paniculata_contig3021.8194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3021.8194.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI) HSP 1 Score: 183 bits (465), Expect = 1.640e-42 Identity = 183/557 (32.85%), Postives = 250/557 (44.88%), Query Frame = 1
Query: 2059 SSVGLSMKIQSIFEPGTRRLEAEGDRQSLEYDGKRGLRKLSYNYNEYVTAYNTAMVEVCANALGVDSAEVVHVETDFGVQDSAVKTIRRGV-APKITSNEVLAASQLTPVTTCKCRVGKGYESPSLAAAYAVDRLMQAKQFDLMIKDNSFGPVNAVLTDVAFWQDECTSSCPSGDGSYASIFPAETE--SQRDAANDHDETQSHLKWFVVLTAALVGLAIVSWTAAXXXXXXXXXXQQTIEERYAVNPVKPGGKGESHSPSGTALQTSKTALSGHLGGVSPPLSPTASQATTAAARGVRPPAPISVNLITGGAFGSGGKRTPREPDSPGEADWRRKFGLNPSRDSSYRSAPVSPRRSASSSSTSSEAKIRQIVGNPFFSTGSNVDSGREVNAASEGTASGGRGGERHGDRGRSPGSANGSMDLSP-WQ--DVLNAEKRRSSDCVVRSSIAKPMVGGMHRGVTLTPPRRELNRLKEVLNKRPTINHAQTTTPSPATTASIT--------------------KGAFRGERSPSSRAAAESGWGATPVYEIDLAGDDSTG 3651
SS G++++IQSIFE RR + + +DG R LS Y E AY+ MV+VCA +GVD V+ V T FG +A RRG+ +S+E + A+QLTPVTTC+ + ++ S+AAA VDRLMQ + F L + +N FGPVN V+T SG + PAE+E S + N D GLA++S Q+ A +P+ G SP + + H G R PP +S + GG P EP SPGEADWR KFGL P RD +YRSAP+SPRRS S ++S Q G PF+++ + V AA++G+ G G D A+ +M+ W D ++A + ++D VVRSS+AK G +T PR+ELNRLKE LN+ + +T SP TAS AF G S + A A S P+YEIDL D++ G
Sbjct: 711 SSRGITLEIQSIFEARRRRRALSSE---VSHDGSSERRALSVVYEEDAEAYDETMVDVCAYMVGVDRERVISVWTSFGPDGAAEDAARRGLMTSSSSSDEAIMATQLTPVTTCEVDLSGEGDTRSMAAATMVDRLMQPENFVLAMDENQFGPVNVVVT--------------SGPTKWRKSKPAESERYSVKSPPNTKD-------------GGGAGLAVLS-------------PQRYERSATATSPIPDGSSPSCLSPGRSPVPPQAXXXPKHSG------------------RKRTPPPRLSTSPGRGGDV-------PVEPPSPGEADWRHKFGLGPLRDYTYRSAPISPRRSPLSVGSAS-----QSAGEPFYTSYQD-----HVVAAADGSMGGKVGLTPLAD------DASAAMESQVHWHVSDEVDASVQHNNDPVVRSSLAK---AGTVIANAITSPRKELNRLKEALNRPSRLQACHST--SPTVTASSADPSSMPGFFGSEGGFSPGGNNNAFGGSSSGNLNARASS-----PIYEIDLEADENGG 1173
BLAST of mRNA_H-paniculata_contig3021.8194.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.990e-26 Identity = 147/434 (33.87%), Postives = 209/434 (48.16%), Query Frame = 1
Query: 2431 LAAAYAVDRLMQAKQFDLMIKDNSFGPVNAVLTDVAFWQDECTS-SCPSGDGSYASIFP-AETESQRDAANDHDETQSH---LKWFVVLTAALVGLAIVSWTAAXXXXXXXXXXQQ---TIEERYAV----NPVKPGGKGESH-SPSGTALQTSKTALSGHLGGVSPP-LSPTASQATTA-------AARGVRPPAPISVNLITGGAFGSGGKRTPREPDSPGEADWRRKFGLNPSRDSSYRSAPVSPRRSASSSSTSSEAKIRQIVGNPFFSTGSNVDSGREVNAASEGTASGGRGGERHGDRGRSPGSANGSMDLSP-WQ--DVLNAEKRRSSDCVVRSSIAKPMVGGMHRGVTLTPPRRELNRLKEVLNKRPTINHAQTTTPSPATTASITKGAFR--GERSPSSRAAAESGWGA---TPVYEIDLAGDDS 3645
+AAA VDRLMQ + F L + +N FGPVN V+T +EC +CP+GDGSYAS++P AET S + + D T + L WF V+ AL LA++SW ++ ERY+V N GG G + SP G Q S TA S G SP +SP S + R PP +S + G+ P EP SPGEADWR KFGL P RD +YRSAP+SPRRS S ++S + G PF+++ + V AA++G G G D A+ +M+ W D ++A + ++D VVRSS+AK G +T PR+ + + PT+ A + PS ++G F G + +++ + A +P+YEIDL D++
Sbjct: 1 MAAATMVDRLMQPENFVLAMDENQFGPVNVVVTS-----NECRDQTCPAGDGSYASVYPIAETPSSQSSVVGEDTTPDNELKLLWFAVIAGALFLLAVLSWCVVCLCCGGPTKWRKPKPAESERYSVKSPPNTKDGGGAGLAVLSPQGN--QRSATATSPIPDGSSPSCMSPGRSPVXXXXXXXXXHSGRKRTPPPRLSTSP-------GRGRDVPVEPPSPGEADWRHKFGLGPLRDHTYRSAPISPRRSPLSVGSASRS-----AGGPFYTSYQD-----HVVAAADGNMGGKVGLTPLAD------DASAAMESQVHWHVSDEVDASVQHNNDPVVRSSLAK---AGTVIANAITSPRKACH------STSPTVT-ASSADPSSMPGFFGSEGGFSPGGNNNTFGGSSSSHNFNARASSPIYEIDLEADEN 394
BLAST of mRNA_H-paniculata_contig3021.8194.1 vs. uniprot
Match: A0A6H5JBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT3_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.960e-19 Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 238 LEFVIDLCGYCDKYGGAAFNPIDSFHYRDAEGNEPNDLWKGYKLKLPCEGLEGEPVQSIIATPRP----TPAPVA 450
LEF +DLCGYCD Y +FNPID+F Y DAEGNEPND GY+LKL C G+EG+PV+SI ATP P TP+P A
Sbjct: 3 LEFRLDLCGYCDTYNNGSFNPIDTFQYEDAEGNEPNDRKSGYQLKLDCAGIEGDPVESINATPAPVRPPTPSPTA 77 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3021.8194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3021.8194.1 >prot_H-paniculata_contig3021.8194.1 ID=prot_H-paniculata_contig3021.8194.1|Name=mRNA_H-paniculata_contig3021.8194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1999bp VKVNSAPTWSISGECPAVRVAVELTAWSDPCATDLRLYVGVEEPPRDVKTback to top mRNA from alignment at H-paniculata_contig3021:4504..17471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3021.8194.1 ID=mRNA_H-paniculata_contig3021.8194.1|Name=mRNA_H-paniculata_contig3021.8194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12968bp|location=Sequence derived from alignment at H-paniculata_contig3021:4504..17471- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3021:4504..17471- >mRNA_H-paniculata_contig3021.8194.1 ID=mRNA_H-paniculata_contig3021.8194.1|Name=mRNA_H-paniculata_contig3021.8194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11994bp|location=Sequence derived from alignment at H-paniculata_contig3021:4504..17471- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |