mRNA_H-paniculata_contig3021.8193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3021.8193.1
Unique NamemRNA_H-paniculata_contig3021.8193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3021.8193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3021contigH-paniculata_contig3021:2274..4490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1392
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3021.8193.1prot_H-paniculata_contig3021.8193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3021 2652..4451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.2009578-UTR-H-paniculata_contig3021:2273..26511622929927.2009578-UTR-H-paniculata_contig3021:2273..2651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3021 2274..2651 -
1691481073.043936-UTR-H-paniculata_contig3021:2273..26511691481073.043936-UTR-H-paniculata_contig3021:2273..2651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3021 2274..2651 -
1622929927.240956-UTR-H-paniculata_contig3021:4451..44901622929927.240956-UTR-H-paniculata_contig3021:4451..4490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3021 4452..4490 -
1691481073.0733044-UTR-H-paniculata_contig3021:4451..44901691481073.0733044-UTR-H-paniculata_contig3021:4451..4490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3021 4452..4490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.2139757-CDS-H-paniculata_contig3021:2651..31421622929927.2139757-CDS-H-paniculata_contig3021:2651..3142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3021 2652..3142 -
1691481073.0559335-CDS-H-paniculata_contig3021:2651..31421691481073.0559335-CDS-H-paniculata_contig3021:2651..3142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3021 2652..3142 -
1622929927.226673-CDS-H-paniculata_contig3021:3967..44511622929927.226673-CDS-H-paniculata_contig3021:3967..4451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3021 3968..4451 -
1691481073.0647864-CDS-H-paniculata_contig3021:3967..44511691481073.0647864-CDS-H-paniculata_contig3021:3967..4451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3021 3968..4451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3021.8193.1

>prot_H-paniculata_contig3021.8193.1 ID=prot_H-paniculata_contig3021.8193.1|Name=mRNA_H-paniculata_contig3021.8193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
MGALSNFLSGRAPEPAPAVVDGSGSPRARFSASSVSEQWPDDVVGPSDAD
GKRKLAASSSMVPANSRVEAEGSKFAKQRPRAGPADEAFEIAAAIPSKGR
AEEEAVAAATAKGMQLSGRVQSNVRVGGDNEVEEVKKPVKVTVSPARVEL
PALVVKREDEDADCQGVPIGRGAVSLFRSTMNLQSPEPEPSRPISTSDTI
PQTDVETVPKEPGTTHLPSPSVTLATPAATLPTGGLVNNASPLYDRQAIA
RSMAEGAIESRHYEEELDTTYDDESDITMPDQSSWPSSRRSFIAGDLGHG
SVNPETGLSKLNETQELCRTAEES*
back to top

mRNA from alignment at H-paniculata_contig3021:2274..4490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3021.8193.1 ID=mRNA_H-paniculata_contig3021.8193.1|Name=mRNA_H-paniculata_contig3021.8193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2217bp|location=Sequence derived from alignment at H-paniculata_contig3021:2274..4490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAGAGCGGGGTGGTGGTGGGGGAAGGTTCTCGTTGATGGGTGCGTT
GTCGAACTTTCTCAGTGGGCGAGCGCCGGAGCCTGCCCCTGCCGTTGTTG
ACGGTTCAGGATCTCCCCGTGCGAGGTTTTCGGCCTCCTCTGTAAGCGAG
CAGTGGCCAGACGATGTGGTAGGGCCGAGCGATGCTGACGGGAAGAGGAA
GTTGGCTGCCAGTAGCTCCATGGTGCCAGCAAATTCCCGTGTTGAGGCCG
AAGGTTCCAAGTTTGCTAAGCAAAGGCCTAGGGCGGGACCCGCCGATGAA
GCTTTTGAGATCGCCGCAGCTATCCCGAGCAAAGGGAGAGCGGAGGAAGA
GGCGGTGGCGGCGGCCACGGCCAAGGGTATGCAGCTAAGTGGTCGAGTGC
AGAGTAATGTCCGTGTCGGCGGTGACAACGAAGTGGAGGAGGTGAAGAAA
CCAGTGAAGGTGACAGTGTCTCCGGCCCGCGTCGAGCTGCCCGCTCTGGT
GGTGAAGCGTGAAGATGAAGATGGTGAGTTGTTATGGGTAGAGCTCATTC
TGAGGTATTTTGATATTTCTCTGACGTTGTTTCGGCTAGCTGTCTCAGTG
TGCCCTTTGTGGTTTTGAAAACATATGTGGGACCCTGGACCGTCGATGGT
GTGGAGTGGGTGTCCGAACGGGTGCGGGCGGGGGGCGCTCTGTGAGATTT
CGTGGCCAAAATGAATGACGGTGGTAGGACGGAAGAAGGCTGAGCCCACC
GAGAAGATCTACTTTCTCTATCCCGCAGTTACCCGGCCGGTTTGAAGATT
TGGAAGTTGAAATTGGGTAGCAAGATGGATAATACTGACAGGAAAAAACT
TGGAAGGGTTGGTTACTTTTTTGATTGGAGGTTGGGGTAGATTTTAGATT
TTCCTGAAACAGAAATATCGCCACAGTTCCTTCTCTTCGTCCTACCTGGA
GAGAAGTAAACGTTATATTTAAATGGAAAACATGAAGACCATCCAATCAA
CATCTATTGAGTCAACATTCATTGCCAATTAACGTTTAAAGTACCTTTTG
TGCCTGGACAAATAATATTTCGTCAGGTACGGGCCACACGTTTTTTTTGT
TTTTTTTTCTATTTTGCTCGTTGCGCTCAGTTTGTATCGTCGGCTGGTGA
AACTGAGTCGGTGTGATGGTATGATTGTCGTCTCCCACTTGTGCCGAAAT
CAACGACACCCTTCGCAGCACTCCATCAGAAGATTTCTCCCCCACTTATC
TTCGACACATGCGTTCTCCGACCAAAATTCCCATCACGCCCCGCGTCTTG
CCATGTCCGCCGCGTTGACTGTAAATGGTTCTGTGCGAAAATACACAGCA
GATTGCCAGGGAGTACCCATCGGACGTGGCGCTGTCTCCTTGTTCCGCTC
CACCATGAACCTGCAGAGCCCCGAACCCGAGCCGTCGAGGCCAATTTCAA
CATCAGACACCATCCCTCAGACTGATGTTGAGACTGTTCCTAAGGAACCT
GGGACGACCCACCTGCCGTCTCCCTCCGTCACTCTGGCGACCCCGGCCGC
AACTCTTCCGACGGGAGGGCTCGTGAACAACGCGAGTCCCTTGTACGATC
GCCAAGCTATCGCGAGGTCTATGGCCGAAGGCGCGATTGAAAGCAGGCAT
TATGAGGAGGAGTTGGACACTACGTACGACGATGAGAGCGACATTACGAT
GCCTGATCAGTCGTCGTGGCCCAGCTCGAGAAGGTCTTTCATTGCCGGTG
ACCTTGGTCACGGCAGCGTGAACCCAGAAACCGGTCTGTCAAAGTTAAAT
GAAACGCAGGAGCTATGCCGCACTGCCGAGGAATCCTGAAGCAGGAGCGA
GCTAAGTTCGAGGGCTGGTTATCTTGAACACTGTCAGTCGATGCTGATCT
TGATGCTGCGATCAACGTATGGGTGTGCCGACTAGGTTGAGTTTTCACGT
GAAGCTAGTCACGTGGAAATTTCTTTCGATTCGGTGGAGCGGCTTGAGTT
TTTATTTCATGGCCAAAAAAATACGATACTACTTATGCAAATACTTTCTG
CGGCGGCTGTAGGGAGAAGATGCCGAAGGAGTTTCAGGGTGTGTATGGGG
GATTCGCTGTCACGTTCTGCATGCAATAGGTTTTAGATCGTCGACGACGG
TTACGCCTTAGCCCTTACCTCTGAGGACGGAGCCTCGTACTTATAAGAGG
TTCGGAGGAGGAGTAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3021:2274..4490-

>mRNA_H-paniculata_contig3021.8193.1 ID=mRNA_H-paniculata_contig3021.8193.1|Name=mRNA_H-paniculata_contig3021.8193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig3021:2274..4490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCGTTGTCGAACTTTCTCAGTGGGCGAGCGCCGGAGCCTGCCCC
TGCCGTTGTTGACGGTTCAGGATCTCCCCGTGCGAGGTTTTCGGCCTCCT
CTGTAAGCGAGCAGTGGCCAGACGATGTGGTAGGGCCGAGCGATGCTGAC
GGGAAGAGGAAGTTGGCTGCCAGTAGCTCCATGGTGCCAGCAAATTCCCG
TGTTGAGGCCGAAGGTTCCAAGTTTGCTAAGCAAAGGCCTAGGGCGGGAC
CCGCCGATGAAGCTTTTGAGATCGCCGCAGCTATCCCGAGCAAAGGGAGA
GCGGAGGAAGAGGCGGTGGCGGCGGCCACGGCCAAGGGTATGCAGCTAAG
TGGTCGAGTGCAGAGTAATGTCCGTGTCGGCGGTGACAACGAAGTGGAGG
AGGTGAAGAAACCAGTGAAGGTGACAGTGTCTCCGGCCCGCGTCGAGCTG
CCCGCTCTGGTGGTGAAGCGTGAAGATGAAGATGATGGGTGCGTTGTCGA
ACTTTCTCAGTGGGCGAGCGCCGGAGCCTGCCCCTGCCGTTGTTGACGGT
TCAGGATCTCCCCGTGCGAGGTTTTCGGCCTCCTCTGTAAGCGAGCAGTG
GCCAGACGATGTGGTAGGGCCGAGCGATGCTGACGGGAAGAGGAAGTTGG
CTGCCAGTAGCTCCATGGTGCCAGCAAATTCCCGTGTTGAGGCCGAAGGT
TCCAAGTTTGCTAAGCAAAGGCCTAGGGCGGGACCCGCCGATGAAGCTTT
TGAGATCGCCGCAGCTATCCCGAGCAAAGGGAGAGCGGAGGAAGAGGCGG
TGGCGGCGGCCACGGCCAAGGGTATGCAGCTAAGTGGTCGAGTGCAGAGT
AATGTCCGTGTCGGCGGTGACAACGAAGTGGAGGAGGTGAAGAAACCAGT
GAAGGTGACAGTGTCTCCGGCCCGCGTCGAGCTGCCCGCTCTGGTGGTGA
AGCGTGAAGATGAAGATGCAGATTGCCAGGGAGTACCCATCGGACGTGGC
GCTGTCTCCTTGTTCCGCTCCACCATGAACCTGCAGAGCCCCGAACCCGA
GCCGTCGAGGCCAATTTCAACATCAGACACCATCCCTCAGACTGATGTTG
AGACTGTTCCTAAGGAACCTGGGACGACCCACCTGCCGTCTCCCTCCGTC
ACTCTGGCGACCCCGGCCGCAACTCTTCCGACGGGAGGGCTCGTGAACAA
CGCGAGTCCCTTGTACGATCGCCAAGCTATCGCGAGGTCTATGGCCGAAG
GCGCGATTGAAAGCAGGCATTATGAGGAGGAGTTGGACACTACGTACGAC
GATGAGAGCGACATTACGATGCCTGATCAGTCGTCGTGGCCCAGCTCGAG
AAGGTCTTTCATTGCCGGTGACCTTGGTCACGGCAGCGTGAACCCAGAAA
CCGGTCTGTCAAAGTTAAATGAAACGCAGGAGCTATGCCGCACTGCCGAG
GAATCCTGACAGATTGCCAGGGAGTACCCATCGGACGTGGCGCTGTCTCC
TTGTTCCGCTCCACCATGAACCTGCAGAGCCCCGAACCCGAGCCGTCGAG
GCCAATTTCAACATCAGACACCATCCCTCAGACTGATGTTGAGACTGTTC
CTAAGGAACCTGGGACGACCCACCTGCCGTCTCCCTCCGTCACTCTGGCG
ACCCCGGCCGCAACTCTTCCGACGGGAGGGCTCGTGAACAACGCGAGTCC
CTTGTACGATCGCCAAGCTATCGCGAGGTCTATGGCCGAAGGCGCGATTG
AAAGCAGGCATTATGAGGAGGAGTTGGACACTACGTACGACGATGAGAGC
GACATTACGATGCCTGATCAGTCGTCGTGGCCCAGCTCGAGAAGGTCTTT
CATTGCCGGTGACCTTGGTCACGGCAGCGTGAACCCAGAAACCGGTCTGT
CAAAGTTAAATGAAACGCAGGAGCTATGCCGCACTGCCGAGGAATCCTGA
back to top