mRNA_H-paniculata_contig302.8192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig302.8192.1
Unique NamemRNA_H-paniculata_contig302.8192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: D8LS98_ECTSI (MsrB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS98_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 4.040e-92
Identity = 139/209 (66.51%), Postives = 153/209 (73.21%), Query Frame = 3 
Query:  291 MDDEIARDGIKTELTTRDEYLATRFTKLSTSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGR--------------------FRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGLTNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQPENYWGSEGQYRAW 857
            MDDEIAR GIK ELTTRDEYLATRFTKLS S HDLTPFT  E + AA  L     A+LFG     D  + +                    +RDHREKGLYAC VGGLPLFTSGWKLEPRAED CPSFAEPCD+EHLVE  D E+G+T + C RSR+R+G V+ DA SP+GKRYL+ S ALEFHPLGKPLPVRCQPENYWGSEGQYRAW
Sbjct:    1 MDDEIARKGIKEELTTRDEYLATRFTKLSKSQHDLTPFTPSETKAAASHLSPRQEAMLFGGAMEDDRQSSQARHDXXXXXXXXXXXXESRGWRDHREKGLYACAVGGLPLFTSGWKLEPRAEDDCPSFAEPCDDEHLVEEHDAENGVTAVSCARSRVRLGRVVGDAGSPSGKRYLIRSVALEFHPLGKPLPVRCQPENYWGSEGQYRAW 209
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A0G4GH50_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GH50_9ALVE)

HSP 1 Score: 123 bits (308), Expect = 4.970e-29
Identity = 103/309 (33.33%), Postives = 124/309 (40.13%), Query Frame = 3 
Query:  291 MDDEIARDGIKTELTTRDEYLATRFTKLSTSGHDLTPFTQQELQEAALSL---PKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLE------------------------PRAEDIC-----------------------------PSFAEPCDEEHLVE-----------------RKDDESGLTNIFCPRSR---------------LRVGLVLDDATSP-----------TG-------------------KRYLVTSEALEFHPLGKPLPVRCQPENYWGSEGQYRAWQF 863
            MDDEI R GI+ +LTTRDEYLATRF KLS SG+DLT +T +E +EA  SL    +    VL   G  + + +G F   RE+GLY C + GLPLF+SG K                          P   D                               P F+EP D EHLVE                 R   +  L  +   RS                L VG V   A+ P           TG                   + Y + S AL F+PLG PLPV  QPEN WGSEGQYRAW+ 
Sbjct:    1 MDDEIPRPGIRADLTTRDEYLATRFEKLSASGYDLTGWTVEERREALESLGPLTELEEGVLVR-GEMEPAGSGAFIGLRERGLYTCRLDGLPLFSSGCKYALPDGGLRGGSGNSESPPSGIVLPLPSLPDALEGGEFDGTGGNFAMARSVRSVLRSAVEGFPCFSEPVDPEHLVETSVENCINTSSRSLLYSRDGVQRNLVRLSSKRSGTFLGYAWSIPFCFNDLNVGSVEVTASEPGSRFVQLDTKTTGDSGRDLSCGKVGGQGSEMIRVYQICSAALHFYPLGTPLPVEAQPENLWGSEGQYRAWRL 308
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A3M2CGF5_9BACT (Multifunctional fusion protein n=2 Tax=Bacteria TaxID=2 RepID=A0A3M2CGF5_9BACT)

HSP 1 Score: 111 bits (278), Expect = 2.460e-24
Identity = 68/169 (40.24%), Postives = 89/169 (52.66%), Query Frame = 3 
Query:  324 TELTTRDEYLATRFTKL--STSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQP 818
            T LT+      T  +K+  S SG+D+TP  + E++  A  L   A  V    GT    C GRF DH+E G+YACVV GLPLF+S  K         PSF    D +H+  R D+  G+  T I C R    +G V DD   PTG+R+ + S AL+F P G+ LP   QP
Sbjct:   38 TGLTSPSSKEETTVSKIRYSKSGYDITPLERAEVERLAAKLDPEAYRVTQRAGTEPPFC-GRFTDHKESGIYACVVCGLPLFSSEHKFHSGTG--WPSFWREFDPDHVTRRPDNSYGMVRTEIVCTRCGAHLGHVFDDGPPPTGERHCLNSAALKFIPEGQALPPESQP 203
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A2W4ME97_9PROT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4ME97_9PROT)

HSP 1 Score: 103 bits (256), Expect = 3.760e-23
Identity = 61/142 (42.96%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:  375 STSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGK 794
            S SG+DL P +  E +  A  L    R V+   GT +  C G    H+E GLYAC + GLPLF S  K E       PSF  P DE H+VE  DD  G+  T I C R    +G V DD   PT +RY + S +LEFHP G+
Sbjct:    7 SPSGYDLRPLSPAEREALARELSPEERHVILHQGTERPFC-GALLHHKEPGLYACRLCGLPLFNSQTKFESGTG--WPSFHTPFDEAHIVELFDDSHGMRRTEIRCRRCDAHLGHVFDDGPPPTYRRYCLNSVSLEFHPEGR 145
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A2H5XYN4_9BACT (Multifunctional fusion protein n=1 Tax=bacterium HR21 TaxID=2035416 RepID=A0A2H5XYN4_9BACT)

HSP 1 Score: 105 bits (262), Expect = 2.160e-22
Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 3 
Query:  387 HDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQP 818
            +D+TP + +E++  A  L   +  V    GT    C GRF +H+E G+YACVV GLPL+ S  K +       PSF++P D EH+  R D   G+  T ++C R    +G V DD   PTG+R+ + S AL F+P G  LP   +P
Sbjct:   15 YDITPLSPEEVRRRAEQLDPESYRVTQRAGTEPPFC-GRFWNHKEPGIYACVVCGLPLYASQHKFDSGTG--WPSFSQPIDPEHVGRRPDFSHGMVRTELYCVRCGAHLGHVFDDGPPPTGERHCLNSAALRFYPQGAELPPESRP 157
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A2E5EE10_9BACT (Multifunctional fusion protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5EE10_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.040e-21
Identity = 59/150 (39.33%), Postives = 79/150 (52.67%), Query Frame = 3 
Query:  375 STSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQP 818
            S SGHD+TP + Q   E A  L   A  +   DGT +  C G   D++++G YACVV GLPLF+S  K +       PSF  P D +HL    D   G+  T I C R    +G V +D   PTG+R+ + S AL F   G+P+P   +P
Sbjct:    6 SKSGHDITPISDQRRAELAAKLSPEAFKITQKDGTERAFC-GTLLDNKKEGTYACVVCGLPLFSSSHKFDSGTG--WPSFYTPVDPDHLKRTVDKSHGMVRTEISCARCDAHMGHVFEDGPPPTGERHCLNSAALVFLEKGEPVPEASRP 152
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A2D5E6W4_9BACT (Multifunctional fusion protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5E6W4_9BACT)

HSP 1 Score: 100 bits (249), Expect = 1.750e-20
Identity = 62/169 (36.69%), Postives = 86/169 (50.89%), Query Frame = 3 
Query:  372 LSTSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQP----EN-------YWGSE 839
            +S +GHD+TP ++ +++E A  L      +    GT +  C G   D++++G+Y CVV GLPLF S  K         PSF    D  H+ E  D+  G+  T I C R    +G V  D  +PTG RY + SE+LEF   GKP+P   QP    EN       +WG E
Sbjct:    9 ISAAGHDVTPLSKAKVEELAKKLTPEQYRITQNAGTERPFC-GTLLDNKKEGMYVCVVCGLPLFKSEHKFISGTG--WPSFFVGYDPAHIRETSDNTLGMVRTEINCARCGSHLGHVFPDGPAPTGLRYCLNSESLEFIEAGKPVPAESQPVMKMENAYFAGGCFWGVE 174
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A1I4SEC6_9GAMM (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Marinobacter zhejiangensis TaxID=488535 RepID=A0A1I4SEC6_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 5.840e-20
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 3 
Query:  375 STSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGK 794
            S +G DLTP +  E+   A++L    R VL   GT +  C G   D++  G+Y C +  LPLF+S  K +       PSF +P D +H+   +D   G+  T I CPR    +G V  D  +PTG+RY + S A+EFHP G+
Sbjct:    4 SAAGFDLTPLSDAEVANRAVTLTPEERHVLLDHGTERPFC-GTLLDNKTDGVYHCRLCELPLFSSSAKFDSGTG--WPSFFQPFDPDHIRYFEDSSHGMVRTEIRCPRCDSHLGHVFPDGPAPTGQRYCLNSIAMEFHPGGE 142
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A8J4CNP1_9CHLO (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CNP1_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 5.930e-20
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 3 
Query:  369 KLSTSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQ----DSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL---TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQP 818
            K+S SG+D+TP +++E + AA  L +  + V+   GT +     +  G   D++++G+Y   +GGLPLF+S  K         PSF  P D EH++E  D          +   RS   +G V DD  +PTGKRY + + AL+F P G+ LP   +P
Sbjct:   84 KVSRSGYDVTPLSEEERRAAAEGLTQFQKYVVLEHGTERAFTGSTINGYSHDNKQRGVYVSALGGLPLFSSDTKFNSGTG--WPSFFAPLDPEHIIEVADYSIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGQELPQESRP 238
[Close]
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Match: A0A3M1R2X0_9BACT (Multifunctional fusion protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1R2X0_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 6.270e-20
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 3 
Query:  369 KLSTSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSCTGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLVERKDDESGL--TNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGKPLPVRCQPEN----------YWGSEGQYR 851
            K S S +D+TP + +++ E A  L + +  V    GT    C G   D+++ G YAC+V GLPLF+S  K   ++    PSF    D EH+  + D   G+  T I C R    +G V +D   PTG+R+ + S AL F+  G PLP   +P            +WG E  ++
Sbjct:    3 KYSKSHYDITPLSAEKVAELAKKLDEESYRVTQKAGTEPPFC-GNLLDNKKDGFYACIVCGLPLFSSEHKF--KSGTGWPSFYREFDPEHVARKVDKSHGMVRTEILCARCGAHLGHVFEDGPPPTGERHCLNSAALRFYEKGAPLPPESRPAQLETAYFAGGCFWGVEHYFQ 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig302.8192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS98_ECTSI4.040e-9266.51MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0G4GH50_9ALVE4.970e-2933.33Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A3M2CGF5_9BACT2.460e-2440.24Multifunctional fusion protein n=2 Tax=Bacteria Ta... [more]
A0A2W4ME97_9PROT3.760e-2342.96Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A2H5XYN4_9BACT2.160e-2239.04Multifunctional fusion protein n=1 Tax=bacterium H... [more]
A0A2E5EE10_9BACT2.040e-2139.33Multifunctional fusion protein n=1 Tax=Phycisphaer... [more]
A0A2D5E6W4_9BACT1.750e-2036.69Multifunctional fusion protein n=1 Tax=Phycisphaer... [more]
A0A1I4SEC6_9GAMM5.840e-2038.03Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A8J4CNP1_9CHLO5.930e-2035.03Peptide-methionine (R)-S-oxide reductase n=2 Tax=V... [more]
A0A3M1R2X0_9BACT6.270e-2033.53Multifunctional fusion protein n=1 Tax=Planctomyce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig302contigH-paniculata_contig302:31551..36079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue1.7e-18
Seed eggNOG ortholog248742.XP_005652026.1
Preferred nameMSRB1
KEGG koko:K07305
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0016491,GO:0016667,GO:0016671,GO:0033743,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055114
EggNOG free text desc.SelR domain
EggNOG OGs34KPK@3041,37I4S@33090,COG0229@1,KOG0856@2759
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-12_004320.1
EC1.8.4.12
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons6
Model size1009
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig302.8192.1prot_H-paniculata_contig302.8192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig302 31688..36035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.0155392-UTR-H-paniculata_contig302:31550..316871622929927.0155392-UTR-H-paniculata_contig302:31550..31687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 31551..31687 -
1691481072.9638214-UTR-H-paniculata_contig302:31550..316871691481072.9638214-UTR-H-paniculata_contig302:31550..31687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 31551..31687 -
1622929927.1461287-UTR-H-paniculata_contig302:36035..360791622929927.1461287-UTR-H-paniculata_contig302:36035..36079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 36036..36079 -
1691481073.0349505-UTR-H-paniculata_contig302:36035..360791691481073.0349505-UTR-H-paniculata_contig302:36035..36079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 36036..36079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.0266097-CDS-H-paniculata_contig302:31687..318111622929927.0266097-CDS-H-paniculata_contig302:31687..31811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 31688..31811 -
1691481072.976019-CDS-H-paniculata_contig302:31687..318111691481072.976019-CDS-H-paniculata_contig302:31687..31811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 31688..31811 -
1622929927.0376432-CDS-H-paniculata_contig302:32305..324431622929927.0376432-CDS-H-paniculata_contig302:32305..32443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 32306..32443 -
1691481072.9859793-CDS-H-paniculata_contig302:32305..324431691481072.9859793-CDS-H-paniculata_contig302:32305..32443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 32306..32443 -
1622929927.0478058-CDS-H-paniculata_contig302:32733..328261622929927.0478058-CDS-H-paniculata_contig302:32733..32826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 32734..32826 -
1691481072.995712-CDS-H-paniculata_contig302:32733..328261691481072.995712-CDS-H-paniculata_contig302:32733..32826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 32734..32826 -
1622929927.0568964-CDS-H-paniculata_contig302:33287..333881622929927.0568964-CDS-H-paniculata_contig302:33287..33388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 33288..33388 -
1691481073.0053465-CDS-H-paniculata_contig302:33287..333881691481073.0053465-CDS-H-paniculata_contig302:33287..33388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 33288..33388 -
1622929927.07017-CDS-H-paniculata_contig302:35255..353451622929927.07017-CDS-H-paniculata_contig302:35255..35345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 35256..35345 -
1691481073.0146182-CDS-H-paniculata_contig302:35255..353451691481073.0146182-CDS-H-paniculata_contig302:35255..35345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 35256..35345 -
1622929927.1248593-CDS-H-paniculata_contig302:35753..360351622929927.1248593-CDS-H-paniculata_contig302:35753..36035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 35754..36035 -
1691481073.025034-CDS-H-paniculata_contig302:35753..360351691481073.025034-CDS-H-paniculata_contig302:35753..36035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 35754..36035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig302.8192.1

>prot_H-paniculata_contig302.8192.1 ID=prot_H-paniculata_contig302.8192.1|Name=mRNA_H-paniculata_contig302.8192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MQPSARSSPLFVIFSVVAFVLLLLWSSQPTNAFVFFGSLMRSDTLVSYSV
QGHHRWRPDSCVSCPSHRRRRSRRQDKGRWMRMDDEIARDGIKTELTTRD
EYLATRFTKLSTSGHDLTPFTQQELQEAALSLPKNARAVLFGDGTWQDSC
TGRFRDHREKGLYACVVGGLPLFTSGWKLEPRAEDICPSFAEPCDEEHLV
ERKDDESGLTNIFCPRSRLRVGLVLDDATSPTGKRYLVTSEALEFHPLGK
PLPVRCQPENYWGSEGQYRAWQFLE*
back to top

mRNA from alignment at H-paniculata_contig302:31551..36079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig302.8192.1 ID=mRNA_H-paniculata_contig302.8192.1|Name=mRNA_H-paniculata_contig302.8192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4529bp|location=Sequence derived from alignment at H-paniculata_contig302:31551..36079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTACCAGCGACCCTCGGATGTGTTGGTGATAAAAGACCGCGATGCAA
CCTTCTGCGCGGAGCTCACCCTTATTCGTCATTTTTAGCGTTGTTGCGTT
TGTCCTTTTGCTGTTATGGTCGTCTCAACCGACCAATGCATTCGTTTTCT
TCGGGTCTCTCATGAGGAGTGATACACTCGTCAGTTATTCCGTACAGGGT
CACCACCGCTGGCGACCAGATTCCTGTGTTTCATGCCCATCCCACCGCCG
ACGACGAAGTCGAAGACAAGACAAGGGGCGATGGATGCGAATGGATGATG
AAATCGCGCGTGATGGGATCAAAACGGTGTGTTGCACATTTGGCAGGTTC
ATTTTCATTTTGGTGTCACTTGTTCCATTGGGGCTCAATAACATGAAAAA
ACCTGTGTGCAGACATTGTTTTACGTCAACAGCATAACGACGACAGTCAG
TAAGTAGTCGGGGAGAGCTGTAATCAAACGTGCGAATAACAAGTTGTTTG
TACGTGGAAGTTACGCTCGATAGACGCCCTTGTCCGCATAGCAAATGCTT
CTGCGCGTCACGTGTTGTCTTTGACTCTTTTGCTCCGTCTGTACCAATCA
ATCTCAAACTGAAGTGTACCGCAATAGTCCTGGAACCATCTCTGGATAGG
GTACTATATCGATATTTCAAATTCTCGTCCTTGAAACGCCTCCCTCTTTC
CCCCCAAATCCACTATGTTTCTCATGGGAATCAGGAGCTAACGACAAGGG
ACGAGTACCTCGCGACGAGGTTCACAAAGCTTTCGACCAGTGGTCACGAC
CTGACACCTTTCACGCAGCAAGAGGTCAGCTAACCATATTAGACAGGCAT
GCCTGAAAGCACGACCGGCATCTCGCGTTACATGCGCGTTCGCCGATGGT
TACATACTCCCTCTGTCCCATAAGTGGCTTATAACGGTATTTTGTAAATA
TATTTTGCAATTTGGGGTTTCGTGAAAAATAACGCATATCATTCGAAAGC
CTACACGTTCAGCTTCTATGCAGACATCTTCAAAACATTTTTTTATTCCG
AAATGGTTGAGAACCGGGTATCTTGACACGTTTTTTTTTTTTCGGACATG
GAACTTTGCAAAACAAGCCGAATAGGCCGAAATCGGCTAAAAATCATGCT
CAATGATTGAAAAAGTCTCAAGGAGATCTCTGATAAAGAAACGGTTTATT
ACATTGTACCCCTTGGCGTCTCATTACTGCTATCCTCCCCATCAATCCAC
CAATTGAAGGCCGCGTCGTAAGCGGCGCTGTCAATCGAGACCAAGTGGCC
CCCCAAAAGCCCATCACGCTGCCTTCTCCTGCTCCCGGTATGTCCAGTGT
CTGAATCATTATCCCTGGCGCTTTCAACACTCGGTTGTACCGCTTGAAGA
GGCTCTGCCGAACTAACTCTAGAGTATCCGCGTCATACTGGCCGTACATG
CTTAAAACCCCCTCTACAAAGGCGTCTGTCTAACGTACGGTAGCGCTCCC
TCCATACTATTGCTAATGGTTCGGCAGAGCCTCTTCAAGCGGTACAACCG
AGTGAAAGGCCTGGAGAGACATGATTTAGGCACGGAAGGGCATACTAGGA
ACAGGGGAGGGCAGCATGAGGGACTTTTGGACCACTTGATCCCGATTGAC
AGCGCCGCTTACGACGCCGCCATTAATTGGTGGGATGATGGGGAGGATGG
CAGTAATGAACTATGATTTTTGTGTGTGATTACGATGTGTGAGACCCCAA
GGGGTACAACGCAACGAACCATTTCTTGATCAGAGGTGTCCTTGAGACTT
TATCAACTGTTGACCATGATTCTCAGCCGATTCGATCCATTCGACTTGTT
TTGCAAAATCTGTCATTCCCGAAAAAAAAAACGCGTTAAGATACCCGTTT
CTCAACCATTTCGAATTCAAAAATCATTTTGAAGGTGTCTACATACAAGC
TGGGTTGAACCCCAAATTGTGTCATTGTCCCACTCCTCATCATTTTTCCT
ATCGCCCCTTTTGGCATCACAACGGTTGGGACAGAGCAGTATTTCTGATT
TTAAAAGTATATATATAGATCTGCAGTGCTTTTTCTTTTCCCCCACATGT
GTTTTGGTGTTTACAGTCAACTGTTCGAACTCAGAATTCTGGGATTCAAT
CCCACATGTTGTAATTCTAGCACCAACAAATAGATAAATCGGGATGTTTA
AGGTCCTTTGTAATCAAAAGGATCTTTACTTATGAGACAGAGAAAGTAGG
TTTATTTTCGTGAATGGAATCATCCTCACGATCCGCTTCGGCTAAGTGAG
GTACATAGCGTTGCAATGCATTTGCAGCTAAGAGTTTCGAACCCCACCCC
CGCTCCCCTCCCCCCGCCAATTATGGCAAGACGAAATCACCTCGCACACT
CCGTATCGTTAGTGATTGTAACTCTCCTCTGTCTATCGATAGAGCATACG
CTATTGACGTCACTATGTAAGGAGAACACGAGCAGCATCCTATTCATGTC
TAACAAATATAGAAATCGCGACTCTGTTTTTTTTTTTGTTACCCCTCGTT
CACAAGCTTGCATTTTGCACACGAAAGCATGAGCGCACACCGCTGTTCAC
GGAGGCTAAAAGCTTATAGTTGACTTTGTCCTTCACGTATGTGCGCATAT
TGGGTTATGTAACATCGCTGCGCTCTGTGTGCGGAAGATAGCTGCAAGAG
GCTGCGCTGTCTCTACCAAAAAACGCTAGAGCCGTGCTATTTGGAGACGG
GACTTGGCAAGACAGCTGTACTGGACGATTTAGGGATCACAGGTAACTGG
CGGGCGTTGGAGGGCACGCTAGCGAGAAAGCAAGGTGATGAAGTTTCCCG
CGCCTCACCCATGGATCGTACCAGTAGCTGCTTGTGAAAGGACCACATGA
ACAGGCGTACTACCTTCTTCTGGCCAGCTGTATTTACCGCGAGTGTAATT
CCGGGTGTTCGGCGTGATGTTGGATAGAGACGAGTGAGCTTCACCTTCTT
AAGCTGCAGTGCTGCATTGAGATGCTATGATAGTAACAGAGCCTTTGCTG
TCGTCAGCACTGCGCGCTTCGCGAGCGCATGGCCCGCTCAGGTCGCACTA
AACTACGACAGCGTAGAGAATTGCCACTACAGGACTAGTGCGAGTCAATG
GCGAAAATGTTTTGCTCTTTTTAGAAGTAATTGACACCCGCCAACAACAC
CCAATTTACCAGTCGTGTCATCGCTATCTCCATCGACTCTGCTGCGCTAA
CAGAGAAAAGGGCTTATACGCATGCGTTGTGGGTGGACTGCCGCTTTTTA
CATCCGGGTGGAAGCTAGAGCCGAGAGCGGAGGACATTTGCCCGAGGTGA
CCTGCAAGCAGACGTTCATTATCCCATACAGTTCAGAATATACAAGCATA
CCGTATGCATGCACAAAAGCAAAACTTGCCGTCACGAGCATACTCGAACC
TTCTTCACTAGGGGCCTACAGCAGTGGCCCAATCCCGCGTCTAGCCAGGT
CATTCGTCGCGTCTGCTCCTGCTACGGTACCGTAGCACCGTCGTATGTGC
CTCTCCGAGCAGTTGCAACAAGGTCTTTGGCAATCTTTTTGGCTTACCGG
GTGTCGTCGTCTGTCGTGTATGTAACGCCTCACCAGTTTCGCCGAGCCCT
GCGACGAGGAGCACTTGGTAGAGCGAAAAGATGACGAAAGCGGACTCACA
AACATTTTCTGTCCGCGATCAAGGCTGCGAGTGGGACTAGTCTTGGACGA
CGCCACGTCCCCGACGGGGAAAAGGTGCGACAGCAGCGTGCGGTGCGCGT
AATAATTAAAATCGCGGGGCTGTTGCAGGGCTATTACATAGCCGCGGTAA
ATGTTGCTGCTGTGATATTTTCGGTTTTTGTAACACAGTGTGCGAATTAA
TTCGATTTTACGCGCAATGTTCCAAGAATTTTTACTGTTCTTGTTATTTT
GTCAGGTCGGGGGTAATGTCTATGGTTTGCGAGACCCCCCCCCCTTCGGC
AAGGAGGGCAAATAAATTCATGTCAAAACTAGTTTGTGTTGTCATGATCC
ACCTGAAGGACGCCTCATCCCCATGTCGCACCGCATGTGGTAACCCGAGG
GTATGCTCTCGATCACGAGTTCGCTCGACGATTTCGTGGCATCACGCCGA
CGCCGAACAGTGATAGCACAAGCTTTGCCACGGGCGTTGTGGCTGACGAT
ATCACTCTCTGTTGTGGTGTTGTCACCACGTCGTCTTATCGTGTTCCCCC
CTTTCCATATGTTTACAGGTATTTGGTCACAAGCGAGGCGCTAGAGTTCC
ACCCCCTCGGGAAGCCTCTGCCCGTCCGCTGCCAGCCTGAGAACTACTGG
GGTTCTGAAGGACAGTATCGAGCCTGGCAATTTTTGGAGTAGCACTGCAT
ACGCTGAAAACGATAAAAACCTTAGCCGCAGATGTCCACGAGCACATGAG
GTTATTCAGGTCGAATTCATCGCTTATTTTTTCTTTTTTGTTTTCAGTTG
GTGTAATTGTGTTGTTTGACACGTAGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig302:31551..36079-

>mRNA_H-paniculata_contig302.8192.1 ID=mRNA_H-paniculata_contig302.8192.1|Name=mRNA_H-paniculata_contig302.8192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig302:31551..36079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCTTCTGCGCGGAGCTCACCCTTATTCGTCATTTTTAGCGTTGT
TGCGTTTGTCCTTTTGCTGTTATGGTCGTCTCAACCGACCAATGCATTCG
TTTTCTTCGGGTCTCTCATGAGGAGTGATACACTCGTCAGTTATTCCGTA
CAGGGTCACCACCGCTGGCGACCAGATTCCTGTGTTTCATGCCCATCCCA
CCGCCGACGACGAAGTCGAAGACAAGACAAGGGGCGATGGATGCGAATGG
ATGATGAAATCGCGCGTGATGGGATCAAAACGATGCAACCTTCTGCGCGG
AGCTCACCCTTATTCGTCATTTTTAGCGTTGTTGCGTTTGTCCTTTTGCT
GTTATGGTCGTCTCAACCGACCAATGCATTCGTTTTCTTCGGGTCTCTCA
TGAGGAGTGATACACTCGTCAGTTATTCCGTACAGGGTCACCACCGCTGG
CGACCAGATTCCTGTGTTTCATGCCCATCCCACCGCCGACGACGAAGTCG
AAGACAAGACAAGGGGCGATGGATGCGAATGGATGATGAAATCGCGCGTG
ATGGGATCAAAACGGAGCTAACGACAAGGGACGAGTACCTCGCGACGAGG
TTCACAAAGCTTTCGACCAGTGGTCACGACCTGACACCTTTCACGCAGCA
AGAGGAGCTAACGACAAGGGACGAGTACCTCGCGACGAGGTTCACAAAGC
TTTCGACCAGTGGTCACGACCTGACACCTTTCACGCAGCAAGAGCTGCAA
GAGGCTGCGCTGTCTCTACCAAAAAACGCTAGAGCCGTGCTATTTGGAGA
CGGGACTTGGCAAGACAGCTGTACTGGACGATTTAGGGATCACAGCTGCA
AGAGGCTGCGCTGTCTCTACCAAAAAACGCTAGAGCCGTGCTATTTGGAG
ACGGGACTTGGCAAGACAGCTGTACTGGACGATTTAGGGATCACAGAGAA
AAGGGCTTATACGCATGCGTTGTGGGTGGACTGCCGCTTTTTACATCCGG
GTGGAAGCTAGAGCCGAGAGCGGAGGACATTTGCCCGAGAGAAAAGGGCT
TATACGCATGCGTTGTGGGTGGACTGCCGCTTTTTACATCCGGGTGGAAG
CTAGAGCCGAGAGCGGAGGACATTTGCCCGAGTTTCGCCGAGCCCTGCGA
CGAGGAGCACTTGGTAGAGCGAAAAGATGACGAAAGCGGACTCACAAACA
TTTTCTGTCCGCGATCAAGGCTGCGAGTGGGACTAGTCTTGGACGACGCC
ACGTCCCCGACGGGGAAAAGTTTCGCCGAGCCCTGCGACGAGGAGCACTT
GGTAGAGCGAAAAGATGACGAAAGCGGACTCACAAACATTTTCTGTCCGC
GATCAAGGCTGCGAGTGGGACTAGTCTTGGACGACGCCACGTCCCCGACG
GGGAAAAGGTATTTGGTCACAAGCGAGGCGCTAGAGTTCCACCCCCTCGG
GAAGCCTCTGCCCGTCCGCTGCCAGCCTGAGAACTACTGGGGTTCTGAAG
GACAGTATCGAGCCTGGCAATTTTTGGAGTAGGTATTTGGTCACAAGCGA
GGCGCTAGAGTTCCACCCCCTCGGGAAGCCTCTGCCCGTCCGCTGCCAGC
CTGAGAACTACTGGGGTTCTGAAGGACAGTATCGAGCCTGGCAATTTTTG
GAGTAG
back to top