mRNA_H-paniculata_contig302.8190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig302.8190.1
Unique NamemRNA_H-paniculata_contig302.8190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: D8LS96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS96_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 4.800e-100
Identity = 150/171 (87.72%), Postives = 162/171 (94.74%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAAPGDSGKVA 762
            M++VNVTNVVVLDNPT F NPLTFEVTFECL+ LDADLEWKVIYVGSAED ++DQVLEEVDVGPIP+GVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYK +EFIRVGYYVNNEH DPA+NAEIQEGRIPPA+TLDPA I+RNILADKPRVTRFPIDWNAAPG++G  A
Sbjct:    1 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGAAA 171
[Close]
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A7S1C5P9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P9_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.280e-64
Identity = 106/160 (66.25%), Postives = 125/160 (78.12%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDW 729
            MA VNV N+ VLDNPT FTNP  FEVTFEC+ EL  DLEWKV+YVGSAE ++FDQ L+ V VGP+PVGVNKFV+    PDP+ IP TD++GVTV LITC YKS+EFIRVGYYVNNE  +     E+ EG  PP E ++PA + RNILA+KPRVTRFP+DW
Sbjct:    1 MASVNVLNISVLDNPTAFTNPFQFEVTFECVAELSDDLEWKVVYVGSAESDKFDQELDNVLVGPVPVGVNKFVMQTAPPDPSRIPKTDVLGVTVVLITCSYKSQEFIRVGYYVNNEWGE-----ELAEGEAPP-EDMEPAKVVRNILAEKPRVTRFPVDW 154
[Close]
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A7S0FP47_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP47_9STRA)

HSP 1 Score: 213 bits (542), Expect = 4.400e-64
Identity = 105/168 (62.50%), Postives = 127/168 (75.60%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAAPGDSG 753
            MALVNV N+VVLDNPT F NP  FE+TFECLQEL+ DLEWKV+YVGSAED   DQ+L+E+ VGP+PVGVNKFVL A++PDPA+IP  D++GVTV L+TC YK +EFIR+GYYVNNE+ DP       +  + P   LD   + R ILADKPRVTRF I W+ A  + G
Sbjct:    1 MALVNVVNMVVLDNPTNFRNPFQFEITFECLQELEDDLEWKVVYVGSAEDMTADQILDEILVGPVPVGVNKFVLQADAPDPASIPNADILGVTVVLVTCSYKEREFIRIGYYVNNEYADP------YDPEVGPPSPLDIKKVVRTILADKPRVTRFNIPWDGAEEEKG 162
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BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A7S2LP02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LP02_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.880e-63
Identity = 107/163 (65.64%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAA 738
            MALVNV N+VVLDNPT F NP  FE+TFECLQELD DLEWKV+YVGSAED   DQVLEEV VGP+PVGVNKFVL A++ DPATIP  D++GVTV L+TC YK++EF R+GYYVNNE   P      + G+      +D + + R ILADKPRVTRFPIDW+ A
Sbjct:    1 MALVNVVNMVVLDNPTHFRNPFQFEITFECLQELDDDLEWKVVYVGSAEDSTHDQVLEEVLVGPVPVGVNKFVLQADAADPATIPKEDILGVTVVLVTCSYKNQEFARIGYYVNNEMELPPGTPVDESGKPIEDIPIDYSKLMRQILADKPRVTRFPIDWSGA 163
[Close]
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A7S4WBT6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WBT6_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.550e-63
Identity = 112/197 (56.85%), Postives = 140/197 (71.07%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNA---APGDSGKVAAESEEAGSGVEAAAMDEAAMEDD 831
            MALVNV N++VLDNPT F NP  FE+TFECLQEL+ DLEWKV+YVGSAE    DQVL+E+ VGP+PVG+NKFVL AE PDP  IPP D++GVTV L+TC Y+ +EF+R+GYYVNNE+     + E  E   PP + ++   ++R ILADKPRVTRFPI WN    A   +G+V  E     +G + A  DE  ME+D
Sbjct:    1 MALVNVVNMMVLDNPTAFLNPFQFEITFECLQELEEDLEWKVVYVGSAESSEHDQVLDEILVGPVPVGINKFVLQAEPPDPRRIPPNDIIGVTVVLVTCAYREREFVRIGYYVNNEY-----SGEYDEETGPP-KPIELGKVTRMILADKPRVTRFPIPWNGQENADASNGQVETEDAHVMNG-QGAKSDEQLMEED 190
[Close]
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: W7TM89_9STRA (Histone chaperone n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM89_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.040e-61
Identity = 106/168 (63.10%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAAPGDSG 753
            MALVN+TN+VVLDNPT+FTNP TFEVTFEC+QEL+ DLEWKV+YV SAE+   DQVLEEV VGP+PVGVNKFVL + +PD + IP  D++GVTV LITC Y+ +EF+RVGYYVNNE+ +P            P   +D   + RNILADKPRVTRFPIDW    G  G
Sbjct:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENADQDQVLEEVMVGPVPVGVNKFVLQSAAPDVSQIPEEDIIGVTVILITCTYREQEFVRVGYYVNNEYAEPFDPDH-------PPRPVDLLKLVRNILADKPRVTRFPIDWGMGMGVEG 161
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BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A6G0WHB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHB9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.510e-61
Identity = 105/167 (62.87%), Postives = 121/167 (72.46%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAAPGDS 750
            MA V +TN+ VLDNPT FTNP  FEVTFEC   L+ DLEWK+ YVGSAEDE  DQVLEEV VGP+PVG NKFV  +E PDPA IP  D +GVTV L+TC YKS+EF+RVGYYVNN++ DP +          P   +D   + RNILADKPRVTRFPIDW  APG +
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDPAAIPEEDKIGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN-------PPPVVDIHKLQRNILADKPRVTRFPIDW--APGSA 158
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BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A1V9ZTB3_9STRA (Histone chaperone ASF1-like protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZTB3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.130e-61
Identity = 105/163 (64.42%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAA 738
            MA V +TN+ VLDNPT FTNP  FEVTFEC   L+ DLEWK+ YVGSAEDE  DQVLEEV VGP+PVG NKFV  +E P+PA IP  D +GVTV L+TC YKS+EF+RVGYYVNN++ DP +         PPA T+D   + RNILADKPRVTRFPIDW  A
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLL------EAPPA-TVDITKLQRNILADKPRVTRFPIDWAPA 156
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BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A024TEU9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TEU9_9STRA)

HSP 1 Score: 207 bits (526), Expect = 3.010e-61
Identity = 108/168 (64.29%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDWNAAPGDSG 753
            MA V +TN+ VLDNPT FTNP  FEVTFEC   L+ DLEWK+ YVGSAEDE  DQVLEEV VGP+PVG NKFV  +E PDP  IP  D VGVTV L+TC YKS+EF+RVGYYVNN++ DP +         PPA  +D   + RNILADKPRVTRFPIDW  APG +G
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDPNNIPEEDKVGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN------PPA-VVDIHKLQRNILADKPRVTRFPIDW--APGATG 159
[Close]
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Match: A0A067BZQ2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BZQ2_SAPPC)

HSP 1 Score: 206 bits (524), Expect = 3.630e-61
Identity = 103/160 (64.38%), Postives = 120/160 (75.00%), Query Frame = 1 
Query:  250 MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAEDERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADKPRVTRFPIDW 729
            MA V +TN+ VLDNPT FTNP  FEVTFEC   L+ DLEWK+ YVGSAEDE  DQVLEEV VGP+PVG NKFV  +E P+PA IP  D +GVTV L+TC YK +EF+RVGYYVNN++ DPA+         PPA  +D   ++RNILADKPRVTRFPIDW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCAYKGREFVRVGYYVNNDYSDPALVEN------PPAN-VDITKLARNILADKPRVTRFPIDW 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig302.8190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS96_ECTSI4.800e-10087.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1C5P9_9STRA1.280e-6466.25Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0FP47_9STRA4.400e-6462.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2LP02_9STRA1.880e-6365.64Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4WBT6_9STRA2.550e-6356.85Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
W7TM89_9STRA1.040e-6163.10Histone chaperone n=1 Tax=Nannochloropsis gaditana... [more]
A0A6G0WHB9_9STRA1.510e-6162.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZTB3_9STRA2.130e-6164.42Histone chaperone ASF1-like protein n=2 Tax=Saprol... [more]
A0A024TEU9_9STRA3.010e-6164.29Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A067BZQ2_SAPPC3.630e-6164.38Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig302contigH-paniculata_contig302:19980..25518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue2.4e-82
Seed eggNOG ortholog2880.D8LS96
Preferred nameASF1
KEGG koko:K10753
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0001932,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006337,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007610,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016574,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0018991,GO:0019098,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030466,GO:0031056,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032986,GO:0033043,GO:0033044,GO:0033523,GO:0033554,GO:0034243,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034724,GO:0034728,GO:0035065,GO:0035066,GO:0036211,GO:0040029,GO:0042325,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043618,GO:0043620,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044706,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060378,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:2000112,GO:2000113,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.chromatin assembly or disassembly
EggNOG OGsCOG5137@1,KOG3265@2759
Ec32 ortholog descriptionHistone chaperone, ASF1-like
Ec32 orthologEc-12_004340.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons6
Model size1188
Cds size939
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.7765598-CDS-H-paniculata_contig302:19979..202461622929926.7765598-CDS-H-paniculata_contig302:19979..20246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 19980..20246 -
1691481072.785222-CDS-H-paniculata_contig302:19979..202461691481072.785222-CDS-H-paniculata_contig302:19979..20246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 19980..20246 -
1622929926.7892585-CDS-H-paniculata_contig302:21467..217581622929926.7892585-CDS-H-paniculata_contig302:21467..21758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 21468..21758 -
1691481072.799256-CDS-H-paniculata_contig302:21467..217581691481072.799256-CDS-H-paniculata_contig302:21467..21758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 21468..21758 -
1622929926.801486-CDS-H-paniculata_contig302:22199..223511622929926.801486-CDS-H-paniculata_contig302:22199..22351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 22200..22351 -
1691481072.8180661-CDS-H-paniculata_contig302:22199..223511691481072.8180661-CDS-H-paniculata_contig302:22199..22351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 22200..22351 -
1622929926.8153784-CDS-H-paniculata_contig302:22955..230191622929926.8153784-CDS-H-paniculata_contig302:22955..23019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 22956..23019 -
1691481072.830009-CDS-H-paniculata_contig302:22955..230191691481072.830009-CDS-H-paniculata_contig302:22955..23019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 22956..23019 -
1622929926.8318229-CDS-H-paniculata_contig302:23832..238881622929926.8318229-CDS-H-paniculata_contig302:23832..23888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 23833..23888 -
1691481072.841387-CDS-H-paniculata_contig302:23832..238881691481072.841387-CDS-H-paniculata_contig302:23832..23888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 23833..23888 -
1622929926.842408-CDS-H-paniculata_contig302:25160..252691622929926.842408-CDS-H-paniculata_contig302:25160..25269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 25161..25269 -
1691481072.8522694-CDS-H-paniculata_contig302:25160..252691691481072.8522694-CDS-H-paniculata_contig302:25160..25269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig302 25161..25269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.855875-UTR-H-paniculata_contig302:25269..255181622929926.855875-UTR-H-paniculata_contig302:25269..25518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 25270..25518 -
1691481072.8632317-UTR-H-paniculata_contig302:25269..255181691481072.8632317-UTR-H-paniculata_contig302:25269..25518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig302 25270..25518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig302.8190.1prot_H-paniculata_contig302.8190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig302 19980..25269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig302.8190.1

>prot_H-paniculata_contig302.8190.1 ID=prot_H-paniculata_contig302.8190.1|Name=mRNA_H-paniculata_contig302.8190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MALVNVTNVVVLDNPTTFTNPLTFEVTFECLQELDADLEWKVIYVGSAED
ERFDQVLEEVDVGPIPVGVNKFVLTAESPDPATIPPTDLVGVTVTLITCC
YKSKEFIRVGYYVNNEHMDPAINAEIQEGRIPPAETLDPASISRNILADK
PRVTRFPIDWNAAPGDSGKVAAESEEAGSGVEAAAMDEAAMEDDEDMLVV
GAEGEGGVGMDEEMGGGAEGEGGEGSDSMGSEGEADGDDDRSVDLEEEER
SGDAEGEADMDADSSGAEDMEDVTGDAVRAANSVLSSSSATTDAGVGAST
ISSGPTTGGLTSA
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mRNA from alignment at H-paniculata_contig302:19980..25518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig302.8190.1 ID=mRNA_H-paniculata_contig302.8190.1|Name=mRNA_H-paniculata_contig302.8190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5539bp|location=Sequence derived from alignment at H-paniculata_contig302:19980..25518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCACCCAACCCCACCTGACCAGCACACACCAGGACCCTCCAGCTGTCA
GCGTTATCTCGCGATCTCTCTGGATCAAGGAGCACATTGGACGGAATTTT
AACAGGCAACATACGCTAGTGGAGTTGAAGTTCTGTGGTTCTCTCCAACA
TTGTAGGAAACGAAATACTGCTGCTTCCACTGCTGTAAGCTGCTGTCTGG
AAAGCAGAGAGCGGTGCATAAATAGAAGCGGAGGGAGAGACAAGACATCA
TGGCGCTCGTGAATGTGACCAATGTTGTGGTATTGGACAACCCAACAACA
TTCACCAACCCACTGACCTTCGAGGTTACCTTCGAATGTCTGCAAGAGTT
GGATGCTGGTGAGCCTCACACCTCTTCTGCGAGTACAGCGTTTGCTGCTG
TGTGTCAATCCACTTCCGGTTGAATCGTCTCAAAATCTGAAGTGGGAGTG
TTCTTCTGTGCTCCCTGTCCCCTCCCAACTACTCGGACCGTCCCCAACCA
GAGTTTTGAACAAATCATTATGCGGGCGGTGCCATCACGGTTGAATGAAG
TAGCGTCTCTGTATTGTTGTCTCTGCGTTAGTGCCTCTTAGCTGGGTGCC
CGTGACGTCCTCGTAGTTACAGCTTTGTCCGGTATCCTTGCCTCCCGCCA
CTCCGCTGTCTTCTCCGTGCGGTTATCCGGACTCTCGTATTTTGAAAATT
CAATTTCATCACTTAGTCGTACTGTTTGTTTTGAAATAAGCGTTCACGAG
CGCGAAATAATCATGACAGAGGATGGCGTCCAGGCGCTTCTTCTGAAAAG
CGCGCACATGGCGATCCCTCCCGCTTTTTTCTGTTTGTCGTTTGATTTTG
GGCGCGAATTCGAGATGAGCTTTGGGCCTTCACTTGGCACCATTTTCTTC
TCAGACATGTGATCTCTCTGGCTCTAGGCGTTGGGCTTTCTTTTGTAGTC
CTCCCTTCCGATTTAGCTGTACGCAGTATGGGATTTCATTAGGGGGGAAA
CTCGCAAACGGGCTGTTGACAAACCCACAGAGATGTACAGTGCATACGAG
AGATTTAAATTTCGAAAAATGAAGGAGAGTCCTTTCTCACGTGGTGGTTT
GTGTGGGTATCCAAACGGACATTTACACAACAGTAGGTGCGTATAGACAG
TGTGTAGCAGCAACGCGTAGGGTACTACAATCGCTTGAATGGTGTTTTTT
CGATGGTACCTGCAAACGATGCCCCCGTTTTTGAGTAGTCTGTAGCAATA
ATACTACAGTCAGTAACACTACATTGTGTAGATTTTGTGTTTGGAGGAAA
CGAGACTATTTACTTCACCCATGAAGTGGTTTATAGACAGTGCAGAGAGC
ATACAGTTCGATGTATTGATCTAATTTTGCCGACATATAACCCTCCTCCC
GAAAAACTAGTAACGGTCAGCCCCAAATGAATCAGACGAACGGTGTCAAC
CCCGTCGTCTATTCTAGTACTAGATATGCATGCCTAGCCCTCTCGCACTG
ACCGTCATGTTGCGCGAGGTTGTGGGGATGCATGTATTTCGTGCACTTTT
CCTGAATTACCTGTATTGATTGTCTTGCATTATGAGTCAAACGCCGCCGG
TACCTCCGTAATAATCATGTGGTACGCCAGATTTGGAGTGGAAAGTGATT
TACGTCGGGAGTGCCGAGGACGAGCGATTTGATCAGGTGAGCGATGACAG
CATTGCGACGCTGCCGAGGCTTGGGCCGAGTTTACTGTTTGACAGAGCGA
ACTCGTGAAACTAGTGTACACGTGCTATGTGTTATTTATCTTCAAATGGC
CCTAACGCCCTCCCAAATTTTGTACATGCTCTCGATCACGTCGTCCGTGC
ACAACAATATGTGCATGTTTTATATCTGTTTATTCGGACGTTCATGGGAT
ATGTTGCACGTCAAACCATACATGGCGTAGTCGAATCTGCAGACCACATA
AACTCGTATTTATAAAATAAATATTGGAGAAATTCAGAGAATTTCATGTT
GATAAAAAATATTCACATCCTCCGGCGGGGGAACTTTTTTTTCTTCCTCC
TTTTTCCCCTTTATGTTCTTCCTTCCCCTATCCCTCCCTCCCCCACTTTT
GGCACATTAGCATACTTTCAATTCTCTTTAATCATGCTTGTACCTTTACA
CGAGTGCATGTTTCCGATTTGTGCTACAGGGCAATTGGGGCATCTCCATC
CTATAGCCGCAGCCTAACCTGACACTCATCATGCGAGTCACGATTGGAAA
ATGACTTTGTACAGTACATGTGGAAGAGGACACGTTGTACAAAGCGTTGG
AAGGAAAAAATGTATCAATTCGCTGCAAACGTGTAAATCATATGTAGTTC
TATTCTTTATTCGAATACGTCATCTATCCATTAAATGCGTCTTGAGATAT
TGCGAGTTTTTTCTTTTTCGAAGAAAGCATTTGAACTACGGTTGTGTACT
CTACGTATGTTGATATTTTGCTATTTATTTTTCAATTTTCCCCGGGCAGG
TTTTGGAAGAAGTGGACGTCGGACCTATTCCCGTCGGCGTGAACAAGTTT
GTGCTCACAGCAGGTAAGCGGAACGTTCCTATTATGCACGAGCTAAAGAA
GAAAAATCAGCACTGTGTGGTCGATCGACGAGTGCGTGTGAAACGTTGTG
CCGACGTGGTTTCAAGCGTAGCGGACGATTACCACGTATTTCCAGGGTGC
ATCGGTATGGATGTACACTTGTATTGTATGGCTCCAAACTGCGTTTTTGA
GACGTCACCCTTCAGGTTGGCGATCGGTGGACCCAATCCGAGAGTTGTTC
ACCGTCTCATGTACAAGGTGGCACCCTCTGTGTTACCTTTTAGAGAGCAG
AGTCCGCAGTAGGTCACTCGGGGAAAAGCAGAGGTTGGAATTGGGCTGAA
TTGTTCCGACTACGATATCCTCCCGATTTTGAATGCCCCAGACGAAGGAC
GATCCGGTTTTATTGCCAAGTGGCCCATCAGATGCATTTGTGTAGTTTAG
TCAGTACCTCGTGGTACAGGATAACAGTGGCGATCGGCTGCACGGATTGT
ACTGAACGCATGTCTACATGTCCGCTCCTCCCGGTCCGGCCCGGCCCGGC
CTTGCCCTGCCCCTCGTCGCTTGCCTTGTGTGTCTCCCTCTTCTCTTGAT
GATTCTGCTCGATTTAGAGTCGCCTGATCCCGCAACGATTCCGCCGACGG
ACCTAGTGGGCGTTACGGTGACACTTATCACGTGCTGCTACAAATCGAAG
GAGTTCATCCGCGTTGGCTACTACGTGAACAACGAGCACATGGACCCGGC
GATAAACGCGGAAATACAGGTGAACGAAAGTCCCACCACGTGGCTTACTC
AAAGGGATTTTTACATCACAGTCTCCGTTGATGCTCATCTGGCATTTCTA
TATCCGTCCCGCCTCCCTGTGTCATATTTGAAAAATTCATATAAAGTTTT
CTGATATTCTTTTACAGCACAAGACTAACATAACTACCACGCCCATGCTC
CGCTTCGCAGCCCTCCTCCACTCGCCCTGTTTGATCTCATTTTTCTTTGG
AGTCTACACAAGTGAAGTATGACGTCTGCTGCTTAACCTCAATATGAGCG
TAGTTCTAACTGTGGCAAGCGGGTTGAACTAGGATGAGAATCCCGGTACG
TGACACCAACCTTACCCCATCCTACCCCCCTCCCCTGCACTCTGTTATCC
CGGTGGATAACTCCCCTCTCCCACCTCCCTTCGCTACTTTCACGGCCGAC
GCCACCGCAGGAGGGCCGCATCCCACCAGCAGAGACGCTGGACCCTGCCA
GCATCTCGCGGAATATTCTGGCGGACAAGCCACGCGTCACTCGTTTCCCG
ATTGATTGGAATGCTGCCCCGGGAGACTCTGGAAAAGTCGCCGCGGAGAG
CGAGGAGGCGGGGTCGGGGGTCGAGGCAGCAGCGATGGATGAGGCTGCCA
TGGAAGATGACGAAGATATGCTTGTGGTTGGTGCAGAGGGGGAAGGAGGG
GTGGGGATGGACGAAGAAATGGGCGGAGGCGCAGAGGGAGAGGGAGGGGA
GGTGAGAGGACAGTGGAGGAGAATATACTAGCCTTCACAGAAGAAGGCAG
GTGGTGACAGACTTCTAGTACATGTGTTCTCCCCAAACTTCTCCGAAGCA
CATTAGTGACAACCGCCAGCCAAAATACTACGTTAGGGGTACCTTTACAA
TACGTTGCAAATATTTCATTCCTTTTAAAATCTGACTTTAGTAGTTGATA
ACGGTGTGTGGAGTTTGTCCAAGCCGTTGGCAGCCTAAAAATCCTTGTAC
AAACTTTGATAGCCCAACCATAGCGTGGGACGGTGAAGTCTTTCCCACAA
TGTCCGTCAAGATATATATCTCTCTGGCAACATGTTACACACGTCGACCA
GGAGTGGATTTTTTTTCCTTTCCTCTTTTTGCGATGTACACTCGAGCCCC
GAGGAGCAGAGAGCAAGAAAGGAAGAGACTGTAGTGTCGCCTCCGTTGCC
TGTTGTTGTGAATTGTTTGGGTCCTTTGCCGTTCTGTGTTGTAGTACAGA
TGGGCGCAGTGTTGTGTGTGAGTAAAAACCTTCACTACGCTCATTATATT
CTGGTCTACAATATATCGATCTCTCGTAATTAGATCCTTTATAGTATCGT
TGTGTACAGCGAAAGCGGTGGAATTTCCTGCCTTTGAGTGTCACTCGGGT
AGTTTTTGGGCCGTGTCTCGGTGGACGCTTCCGCGGGGGTGGTTGGTTTT
ACCCAAGGAGTTTGGTTCCTGGCTTGACCCCTCGTGCATTTTGCGACCCG
AAGCAAGGGGCTTGCTTGATGCAAGTCTGAGAAAGTGCAGTTGATGCCTT
CGCCACAGTCGTTCATTCGTTTGGCCACCTACTAATGAAGCCTTAGGAAT
AAGCTCCGTGTTTGAGAGAAAGCGTGGCCGATGGCGTAACAACTACGGCA
TGCAGAGCATGACTTCCCCCCCTGTTGAAACCGCTGTACATACAAAAAGT
ATGCTTCACAAGCCACCATATATCTGGTATTTAGCACTCAACCCACATTA
TACAGAGTAAAAAAATTCTCATCCCCAATCCCTTATCGTTTTCATTACAA
GATAGCGGAATTACGAACATATAAGAGGTGCGTGTGCTGTCTTTTTTTTT
TTTCACCTCGTATCTCCGACATGACACCAAAAGACTACGCGCTGGCAAAA
CACGGCTCCGCCCTCCGCTCCTGGCTGCCTTGTTGCGCCCCCCGGATTTA
ATTTTTATTTATTTTTCTGCAGGGCTCTGACAGCATGGGCTCGGAAGGGG
AAGCGGACGGGGACGATGACCGCAGCGTAGATTTGGAGGAGGAGGAAAGG
TCCGGGGACGCAGAGGGTGAGGCGGATATGGACGCAGATAGCAGCGGCGC
GGAGGATATGGAAGACGTGACGGGTGATGCCGTGCGGGCAGCAAACAGCG
TCCTATCGTCGTCATCGGCGACGACGGATGCCGGGGTGGGGGCATCAACA
ATATCGTCGGGCCCGACGACAGGGGGCCTGACGTCCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig302:19980..25518-

>mRNA_H-paniculata_contig302.8190.1 ID=mRNA_H-paniculata_contig302.8190.1|Name=mRNA_H-paniculata_contig302.8190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig302:19980..25518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTCGTGAATGTGACCAATGTTGTGGTATTGGACAACCCAACAAC
ATTCACCAACCCACTGACCTTCGAGGTTACCTTCGAATGTCTGCAAGAGT
TGGATGCTGATGGCGCTCGTGAATGTGACCAATGTTGTGGTATTGGACAA
CCCAACAACATTCACCAACCCACTGACCTTCGAGGTTACCTTCGAATGTC
TGCAAGAGTTGGATGCTGATTTGGAGTGGAAAGTGATTTACGTCGGGAGT
GCCGAGGACGAGCGATTTGATCAGATTTGGAGTGGAAAGTGATTTACGTC
GGGAGTGCCGAGGACGAGCGATTTGATCAGGTTTTGGAAGAAGTGGACGT
CGGACCTATTCCCGTCGGCGTGAACAAGTTTGTGCTCACAGCAGGTTTTG
GAAGAAGTGGACGTCGGACCTATTCCCGTCGGCGTGAACAAGTTTGTGCT
CACAGCAGAGTCGCCTGATCCCGCAACGATTCCGCCGACGGACCTAGTGG
GCGTTACGGTGACACTTATCACGTGCTGCTACAAATCGAAGGAGTTCATC
CGCGTTGGCTACTACGTGAACAACGAGCACATGGACCCGGCGATAAACGC
GGAAATACAGAGTCGCCTGATCCCGCAACGATTCCGCCGACGGACCTAGT
GGGCGTTACGGTGACACTTATCACGTGCTGCTACAAATCGAAGGAGTTCA
TCCGCGTTGGCTACTACGTGAACAACGAGCACATGGACCCGGCGATAAAC
GCGGAAATACAGGAGGGCCGCATCCCACCAGCAGAGACGCTGGACCCTGC
CAGCATCTCGCGGAATATTCTGGCGGACAAGCCACGCGTCACTCGTTTCC
CGATTGATTGGAATGCTGCCCCGGGAGACTCTGGAAAAGTCGCCGCGGAG
AGCGAGGAGGCGGGGTCGGGGGTCGAGGCAGCAGCGATGGATGAGGCTGC
CATGGAAGATGACGAAGATATGCTTGTGGTTGGTGCAGAGGGGGAAGGAG
GGGTGGGGATGGACGAAGAAATGGGCGGAGGCGCAGAGGGAGAGGGAGGG
GAGGAGGGCCGCATCCCACCAGCAGAGACGCTGGACCCTGCCAGCATCTC
GCGGAATATTCTGGCGGACAAGCCACGCGTCACTCGTTTCCCGATTGATT
GGAATGCTGCCCCGGGAGACTCTGGAAAAGTCGCCGCGGAGAGCGAGGAG
GCGGGGTCGGGGGTCGAGGCAGCAGCGATGGATGAGGCTGCCATGGAAGA
TGACGAAGATATGCTTGTGGTTGGTGCAGAGGGGGAAGGAGGGGTGGGGA
TGGACGAAGAAATGGGCGGAGGCGCAGAGGGAGAGGGAGGGGAGGGCTCT
GACAGCATGGGCTCGGAAGGGGAAGCGGACGGGGACGATGACCGCAGCGT
AGATTTGGAGGAGGAGGAAAGGTCCGGGGACGCAGAGGGTGAGGCGGATA
TGGACGCAGATAGCAGCGGCGCGGAGGATATGGAAGACGTGACGGGTGAT
GCCGTGCGGGCAGCAAACAGCGTCCTATCGTCGTCATCGGCGACGACGGA
TGCCGGGGTGGGGGCATCAACAATATCGTCGGGCCCGACGACAGGGGGCC
TGACGTCCGCAGGCTCTGACAGCATGGGCTCGGAAGGGGAAGCGGACGGG
GACGATGACCGCAGCGTAGATTTGGAGGAGGAGGAAAGGTCCGGGGACGC
AGAGGGTGAGGCGGATATGGACGCAGATAGCAGCGGCGCGGAGGATATGG
AAGACGTGACGGGTGATGCCGTGCGGGCAGCAAACAGCGTCCTATCGTCG
TCATCGGCGACGACGGATGCCGGGGTGGGGGCATCAACAATATCGTCGGG
CCCGACGACAGGGGGCCTGACGTCCGCA
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